10 20 30 40 50 60 70 80 2K2D - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 31-MAR-08 2K2D
TITLE SOLUTION NMR STRUCTURE OF C-TERMINAL DOMAIN OF HUMAN PIRH2. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HT2C
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER AND CHY ZINC FINGER DOMAIN- COMPND 3 CONTAINING PROTEIN 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: C-TERMINAL DOMAIN: RESIDUES 187-261; COMPND 6 SYNONYM: ZINC FINGER PROTEIN 363, CH-RICH-INTERACTING COMPND 7 MATCH WITH PLAG1, ANDROGEN RECEPTOR N-TERMINAL-INTERACTING COMPND 8 PROTEIN, P53-INDUCED RING-H2 PROTEIN, HPIRH2, RING FINGER COMPND 9 PROTEIN 199; COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RCHY1, ARNIP, CHIMP, PIRH2, RNF199, ZNF363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS ZINC-BINDING PROTEIN, CYTOPLASM, METAL-BINDING, NUCLEUS, KEYWDS 2 ZINC-FINGER, METAL BINDING PROTEIN, STRUCTURAL GENOMICS, KEYWDS 3 PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 4 GENOMICS CONSORTIUM, NESG
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR A.LEMAK,Y.SHENG,M.KARRA,S.SRISAILAM,R.C.LAISTER,S.DUAN, AUTHOR 2 C.H.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG)
REVDAT 3 28-APR-09 2K2D 1 JRNL REVDAT 2 24-FEB-09 2K2D 1 VERSN REVDAT 1 15-APR-08 2K2D 0
JRNL AUTH Y.SHENG,R.C.LAISTER,A.LEMAK,B.WU,E.TAI,S.DUAN, JRNL AUTH 2 J.LUKIN,M.SUNNERHAGEN,S.SRISAILAM,M.KARRA, JRNL AUTH 3 S.BENCHIMOL,C.H.ARROWSMITH JRNL TITL MOLECULAR BASIS OF PIRH2-MEDIATED P53 JRNL TITL 2 UBIQUITYLATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 1334 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 19043414 JRNL DOI 10.1038/NSMB.1521
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2K2D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-08. REMARK 100 THE RCSB ID CODE IS RCSB100588.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] C REMARK 210 -TERMINAL DOMAIN OF HUMAN REMARK 210 PIRH2, 50 MM SODIUM PHOSPHATE, REMARK 210 150 MM POTASSIUM CHLORIDE, 10 REMARK 210 UM ZNCL2, 0.8 MM DTT, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-99% 13C; U- REMARK 210 99% 15N] C-TERMINAL DOMAIN OF REMARK 210 HUMAN PIRH2, 50 MM SODIUM REMARK 210 PHOSPHATE, 150 MM POTASSIUM REMARK 210 CHLORIDE, 10 UM ZNCL2, 0.8 MM REMARK 210 DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D CBCA(CO) REMARK 210 NH; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D C(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D (H)CCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 13C-AROMATIC NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, SPARKY, CYANA, REMARK 210 AUTOSTRUCTURE, TALOS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 MET A 5 REMARK 465 HIS A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 ASP A 10 REMARK 465 MET A 11 REMARK 465 THR A 12 REMARK 465 ARG A 13 REMARK 465 TYR A 14 REMARK 465 TRP A 15 REMARK 465 ARG A 16 REMARK 465 GLN A 17 REMARK 465 LEU A 18 REMARK 465 ASP A 19 REMARK 465 ASP A 20 REMARK 465 GLU A 21 REMARK 465 VAL A 22 REMARK 465 ALA A 23 REMARK 465 GLN A 24 REMARK 465 THR A 25 REMARK 465 PRO A 26 REMARK 465 MET A 27 REMARK 465 PRO A 28 REMARK 465 SER A 29 REMARK 465 GLU A 30 REMARK 465 TYR A 31 REMARK 465 GLN A 32
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 SER A 75 77.59 59.29 REMARK 500 4 SER A 75 55.87 -113.14 REMARK 500 5 ASP A 42 -55.56 -127.43 REMARK 500 6 ASN A 44 82.50 54.91 REMARK 500 6 ASN A 65 39.26 -87.43 REMARK 500 7 LEU A 54 38.09 -90.30 REMARK 500 7 GLU A 62 34.44 70.96 REMARK 500 8 CYS A 61 -7.91 -140.88 REMARK 500 9 ASN A 44 83.21 50.97 REMARK 500 11 ASN A 44 80.75 52.42 REMARK 500 11 CYS A 61 -4.54 -140.90 REMARK 500 12 LEU A 54 33.36 -92.83 REMARK 500 12 CYS A 61 -4.45 -144.20 REMARK 500 12 SER A 75 96.47 -67.16 REMARK 500 13 ALA A 69 -71.18 -86.80 REMARK 500 15 ASP A 42 -54.56 -126.50 REMARK 500 15 LEU A 54 37.40 -90.82 REMARK 500 15 ASP A 77 18.07 -154.39 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 80 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 40 SG REMARK 620 2 CYS A 43 SG 105.3 REMARK 620 3 CYS A 58 SG 107.7 112.0 REMARK 620 4 CYS A 61 SG 112.5 110.5 108.8 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 80
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HT2C RELATED DB: TARGETDB REMARK 900 RELATED ID: 15701 RELATED DB: BMRB REMARK 900 RELATED ID: 2K2C RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN PIRH2, REMARK 900 NESG TARGET HT2A
DBREF 2K2D A 5 79 UNP Q96PM5 ZN363_HUMAN 187 261
SEQADV 2K2D GLY A 1 UNP Q96PM5 EXPRESSION TAG SEQADV 2K2D SER A 2 UNP Q96PM5 EXPRESSION TAG SEQADV 2K2D HIS A 3 UNP Q96PM5 EXPRESSION TAG SEQADV 2K2D MET A 4 UNP Q96PM5 EXPRESSION TAG
SEQRES 1 A 79 GLY SER HIS MET MET HIS SER ALA LEU ASP MET THR ARG SEQRES 2 A 79 TYR TRP ARG GLN LEU ASP ASP GLU VAL ALA GLN THR PRO SEQRES 3 A 79 MET PRO SER GLU TYR GLN ASN MET THR VAL ASP ILE LEU SEQRES 4 A 79 CYS ASN ASP CYS ASN GLY ARG SER THR VAL GLN PHE HIS SEQRES 5 A 79 ILE LEU GLY MET LYS CYS LYS ILE CYS GLU SER TYR ASN SEQRES 6 A 79 THR ALA GLN ALA GLY GLY ARG ARG ILE SER LEU ASP GLN SEQRES 7 A 79 GLN
HET ZN A 80 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
SHEET 1 A 3 ARG A 46 GLN A 50 0 SHEET 2 A 3 THR A 35 CYS A 40 -1 N ILE A 38 O SER A 47 SHEET 3 A 3 THR A 66 GLN A 68 -1 O ALA A 67 N LEU A 39
LINK SG CYS A 40 ZN ZN A 80 1555 1555 2.30 LINK SG CYS A 43 ZN ZN A 80 1555 1555 2.33 LINK SG CYS A 58 ZN ZN A 80 1555 1555 2.34 LINK SG CYS A 61 ZN ZN A 80 1555 1555 2.32
SITE 1 AC1 4 CYS A 40 ASP A 42 CYS A 58 ILE A 60
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000