10 20 30 40 50 60 70 80 2K1J - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER GENE REGULATION 05-MAR-08 2K1J
TITLE PLAN HOMEODOMAIN FINGER OF TUMOUR SUPRESSOR ING4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INHIBITOR OF GROWTH PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHD-TYPE ZINC-FINGER, UNP RESIDUES 188-249; COMPND 5 SYNONYM: P29ING4; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ING4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET11D
KEYWDS PHD, ZN, GENE REGULATION, ACETYLATION, ALTERNATIVE SPLICING, KEYWDS 2 ANTI-ONCOGENE, CELL CYCLE, COILED COIL, METAL-BINDING, KEYWDS 3 NUCLEUS, ZINC, ZINC-FINGER
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR A.PALACIOS,P.GARCIA,D.PADRO,E.LOPEZ-HERNANDEZ,F.J.BLANCO
REVDAT 2 24-FEB-09 2K1J 1 VERSN REVDAT 1 15-APR-08 2K1J 0
SPRSDE 15-APR-08 2K1J 2JMQ
JRNL AUTH A.PALACIOS,P.GARCIA,D.PADRO,E.LOPEZ-HERNANDEZ, JRNL AUTH 2 I.MARTIN,F.J.BLANCO JRNL TITL SOLUTION STRUCTURE AND NMR CHARACTERIZATION OF THE JRNL TITL 2 BINDING TO METHYLATED HISTONE TAILS OF THE PLANT JRNL TITL 3 HOMEODOMAIN FINGER OF THE TUMOUR SUPPRESSOR ING4. JRNL REF FEBS LETT. V. 580 6903 2006 JRNL REFN ISSN 0014-5793 JRNL PMID 17157298 JRNL DOI 10.1016/J.FEBSLET.2006.11.055
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7.0 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2K1J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAR-08. REMARK 100 THE RCSB ID CODE IS RCSB100558.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-95% 13C; U-90% 15N] REMARK 210 PLANT HOMEODOMAIN OF ING4, 95% REMARK 210 H2O, 5% D2O; 1.2 MM [U-95% REMARK 210 13C; U-90% 15N] PLANT REMARK 210 HOMEODOMAIN OF ING4, 100% D2O; REMARK 210 0.9 MM [U-90% 15N] PLANT REMARK 210 HOMEODOMAIN OF ING4, 95% H2O, REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D CBCA(CO)NH, 3D REMARK 210 HNCACB, 3D H(CCO)NH, 3D HNHA, REMARK 210 3D HNHB, 3D 1H-15N NOESY, 3D REMARK 210 1H-15N TOCSY, 3D 1H-13C NOESY, REMARK 210 3D HCCH-TOCSY, 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRVIEW, XWINNMR, REMARK 210 NMRPIPE, NMRDRAW REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 188 -164.03 56.38 REMARK 500 1 TYR A 198 -81.97 -133.56 REMARK 500 1 SER A 205 153.48 -49.04 REMARK 500 1 GLU A 220 -15.70 51.60 REMARK 500 1 SER A 243 -35.18 -152.94 REMARK 500 1 LYS A 247 37.31 -140.36 REMARK 500 2 VAL A 191 148.61 53.43 REMARK 500 2 TYR A 198 -67.34 -136.30 REMARK 500 2 HIS A 202 54.69 71.10 REMARK 500 2 SER A 205 156.71 -47.81 REMARK 500 2 GLU A 220 -10.18 49.80 REMARK 500 2 LYS A 236 108.92 -57.21 REMARK 500 2 CYS A 239 171.87 -58.46 REMARK 500 2 SER A 243 -39.59 -152.79 REMARK 500 2 LYS A 248 80.92 38.79 REMARK 500 3 ASP A 188 46.84 -156.55 REMARK 500 3 TYR A 198 -80.93 -137.51 REMARK 500 3 VAL A 204 -178.89 -67.92 REMARK 500 3 ASP A 216 -10.43 -144.58 REMARK 500 3 GLU A 220 -9.77 46.95 REMARK 500 3 SER A 243 -32.51 -150.24 REMARK 500 3 LYS A 247 56.35 -146.06 REMARK 500 4 MET A 189 -50.33 -156.40 REMARK 500 4 TYR A 198 -55.13 -137.83 REMARK 500 4 HIS A 202 52.01 71.37 REMARK 500 4 SER A 205 155.12 -47.57 REMARK 500 4 GLU A 220 -12.61 50.07 REMARK 500 4 SER A 243 -38.67 -151.17 REMARK 500 5 ASP A 188 -107.52 -140.10 REMARK 500 5 MET A 189 59.51 -140.73 REMARK 500 5 TYR A 198 -81.20 -135.19 REMARK 500 5 SER A 205 151.69 -46.83 REMARK 500 5 GLU A 220 -16.27 50.83 REMARK 500 5 SER A 243 -34.82 -149.17 REMARK 500 6 PRO A 190 45.39 -80.65 REMARK 500 6 TYR A 198 -81.18 -136.38 REMARK 500 6 LEU A 200 -9.72 -59.52 REMARK 500 6 VAL A 204 -179.62 -69.20 REMARK 500 6 SER A 205 150.16 -45.67 REMARK 500 6 GLU A 220 -15.70 50.14 REMARK 500 6 SER A 243 -34.07 -153.71 REMARK 500 6 LYS A 248 72.62 43.78 REMARK 500 7 MET A 189 -49.40 -146.00 REMARK 500 7 TYR A 198 -67.29 -139.46 REMARK 500 7 HIS A 202 52.20 72.45 REMARK 500 7 SER A 205 157.44 -47.94 REMARK 500 7 GLU A 220 -7.75 48.36 REMARK 500 7 CYS A 239 172.51 -59.25 REMARK 500 7 SER A 243 -39.59 -157.08 REMARK 500 7 LYS A 248 50.42 -150.80 REMARK 500 8 PRO A 190 30.79 -80.84 REMARK 500 8 TYR A 198 -54.10 -139.04 REMARK 500 8 HIS A 202 54.86 71.09 REMARK 500 8 SER A 205 152.78 -43.39 REMARK 500 8 GLU A 220 -10.21 50.33 REMARK 500 8 SER A 243 -28.14 -151.22 REMARK 500 9 PRO A 190 29.95 -77.19 REMARK 500 9 TYR A 198 -83.66 -137.61 REMARK 500 9 VAL A 204 -178.72 -68.57 REMARK 500 9 GLU A 220 -9.47 47.67 REMARK 500 9 SER A 243 -39.47 -149.33 REMARK 500 10 ASN A 194 38.59 -88.18 REMARK 500 10 TYR A 198 -80.68 -136.66 REMARK 500 10 SER A 205 151.05 -46.34 REMARK 500 10 GLU A 220 -13.81 50.36 REMARK 500 10 SER A 243 -40.91 -154.01 REMARK 500 11 TYR A 198 -83.83 -133.98 REMARK 500 11 CYS A 199 170.19 -55.28 REMARK 500 11 VAL A 204 -178.67 -69.24 REMARK 500 11 GLU A 220 -8.55 48.16 REMARK 500 11 SER A 243 -41.60 -150.98 REMARK 500 12 ASN A 194 62.61 -106.20 REMARK 500 12 TYR A 198 -83.97 -134.47 REMARK 500 12 VAL A 204 -179.40 -69.17 REMARK 500 12 ASP A 216 -10.86 -144.39 REMARK 500 12 GLU A 220 -8.59 47.63 REMARK 500 12 SER A 243 -33.06 -147.87 REMARK 500 13 MET A 189 91.11 -160.55 REMARK 500 13 TYR A 198 -83.59 -135.34 REMARK 500 13 VAL A 204 -178.21 -69.61 REMARK 500 13 ASP A 216 -9.87 -144.16 REMARK 500 13 GLU A 220 -11.15 48.82 REMARK 500 13 SER A 243 -42.08 -151.65 REMARK 500 13 LYS A 247 -36.87 -138.64 REMARK 500 14 VAL A 191 153.76 51.92 REMARK 500 14 TYR A 198 -83.27 -136.79 REMARK 500 14 VAL A 204 -179.10 -67.83 REMARK 500 14 SER A 205 150.17 -46.31 REMARK 500 14 GLU A 220 -7.59 47.28 REMARK 500 14 SER A 243 -42.43 -149.77 REMARK 500 14 LYS A 247 -67.93 -137.77 REMARK 500 14 LYS A 248 92.34 -165.19 REMARK 500 15 TYR A 198 -81.26 -134.40 REMARK 500 15 SER A 205 150.34 -44.34 REMARK 500 15 GLU A 220 -13.64 50.02 REMARK 500 15 SER A 243 -36.10 -152.97 REMARK 500 16 PRO A 190 23.47 -77.23 REMARK 500 16 ASN A 194 40.58 -89.01 REMARK 500 16 TYR A 198 -79.62 -136.57 REMARK 500 16 VAL A 204 -179.26 -69.05 REMARK 500 16 SER A 205 153.65 -47.91 REMARK 500 16 GLU A 220 -15.68 51.51 REMARK 500 16 SER A 243 -33.28 -151.67 REMARK 500 17 MET A 189 56.35 -154.30 REMARK 500 17 ASN A 194 -158.96 -126.07 REMARK 500 17 TYR A 198 -76.92 -135.09 REMARK 500 17 VAL A 204 -179.89 -66.00 REMARK 500 17 SER A 205 150.81 -47.24 REMARK 500 17 GLU A 220 -11.24 48.83 REMARK 500 17 SER A 243 -40.90 -150.61 REMARK 500 18 ASN A 194 40.48 -91.31 REMARK 500 18 TYR A 198 -82.68 -135.77 REMARK 500 18 GLU A 220 -15.17 50.45 REMARK 500 18 SER A 243 -36.29 -150.29 REMARK 500 18 LYS A 247 -33.21 -149.73 REMARK 500 19 ASN A 194 41.35 -81.95 REMARK 500 19 TYR A 198 -83.88 -135.56 REMARK 500 19 VAL A 204 -178.97 -69.76 REMARK 500 19 ASP A 216 -10.94 -144.52 REMARK 500 19 GLU A 220 -8.08 46.98 REMARK 500 19 SER A 243 -40.02 -152.61 REMARK 500 20 MET A 189 67.61 34.00 REMARK 500 20 PRO A 190 22.99 -76.63 REMARK 500 20 ASN A 194 45.09 -82.04 REMARK 500 20 TYR A 198 -83.98 -133.45 REMARK 500 20 CYS A 199 170.11 -55.13 REMARK 500 20 VAL A 204 -179.84 -68.51 REMARK 500 20 GLU A 220 -9.71 48.31 REMARK 500 20 SER A 243 -42.87 -151.10 REMARK 500 21 TYR A 198 -63.74 -138.08 REMARK 500 21 HIS A 202 53.40 70.32 REMARK 500 21 GLU A 220 -7.68 47.32 REMARK 500 21 SER A 243 -33.76 -149.90 REMARK 500 21 LYS A 247 -37.58 75.27 REMARK 500 22 TYR A 198 -79.89 -135.51 REMARK 500 22 VAL A 204 -177.90 -67.78 REMARK 500 22 GLU A 220 -9.14 48.11 REMARK 500 22 SER A 243 -31.00 -152.27 REMARK 500 22 ARG A 246 40.72 37.92 REMARK 500 22 LYS A 247 -13.20 -147.94 REMARK 500 22 LYS A 248 33.49 -146.93 REMARK 500 23 TYR A 198 -79.17 -135.27 REMARK 500 23 VAL A 204 -179.44 -68.88 REMARK 500 23 SER A 205 153.37 -47.61 REMARK 500 23 GLU A 220 -16.52 51.26 REMARK 500 23 SER A 243 -38.52 -151.92 REMARK 500 23 LYS A 247 61.11 29.84 REMARK 500 23 LYS A 248 73.36 55.94 REMARK 500 24 ASN A 194 58.26 -105.29 REMARK 500 24 TYR A 198 -68.71 -135.36 REMARK 500 24 HIS A 202 54.72 70.48 REMARK 500 24 ASP A 216 -8.85 -146.37 REMARK 500 24 GLU A 220 -9.62 48.70 REMARK 500 24 CYS A 239 171.97 -59.18 REMARK 500 24 SER A 243 -40.10 -149.69 REMARK 500 24 LYS A 247 -37.38 -151.25 REMARK 500 25 PRO A 190 32.54 -81.16 REMARK 500 25 TYR A 198 -72.79 -135.83 REMARK 500 25 SER A 205 154.42 -45.19 REMARK 500 25 GLU A 220 -11.29 50.49 REMARK 500 25 SER A 243 -32.03 -150.92 REMARK 500 25 LYS A 247 -81.19 -112.48 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 250 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 251
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7210 RELATED DB: BMRB
DBREF 2K1J A 188 249 UNP Q9UNL4 ING4_HUMAN 188 249
SEQADV 2K1J MET A 187 UNP Q9UNL4 INITIATING METHIONINE
SEQRES 1 A 63 MET ASP MET PRO VAL ASP PRO ASN GLU PRO THR TYR CYS SEQRES 2 A 63 LEU CYS HIS GLN VAL SER TYR GLY GLU MET ILE GLY CYS SEQRES 3 A 63 ASP ASN PRO ASP CYS SER ILE GLU TRP PHE HIS PHE ALA SEQRES 4 A 63 CYS VAL GLY LEU THR THR LYS PRO ARG GLY LYS TRP PHE SEQRES 5 A 63 CYS PRO ARG CYS SER GLN GLU ARG LYS LYS LYS
HET ZN A 250 1 HET ZN A 251 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
SHEET 1 A 2 MET A 209 ILE A 210 0 SHEET 2 A 2 PHE A 222 HIS A 223 -1 O PHE A 222 N ILE A 210
SITE 1 AC1 4 TYR A 198 CYS A 199 GLN A 203 HIS A 223 SITE 1 AC2 5 GLY A 211 CYS A 212 ASN A 214 PHE A 222 SITE 2 AC2 5 CYS A 239
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000