2K0R - Header Asymmetric Unit

HEADER OXIDOREDUCTASE 13-FEB-08 2K0R

TITLE SOLUTION STRUCTURE OF THE C103S MUTANT OF THE N-TERMINAL TITLE 2 DOMAIN OF DSBD FROM NEISSERIA MENINGITIDIS

COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PERIPLASMIC DOMAIN; COMPND 5 SYNONYM: PROTEIN-DISULFIDE REDUCTASE, DISULFIDE REDUCTASE; COMPND 6 EC: 1.8.1.8; COMPND 7 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B; SOURCE 3 ORGANISM_TAXID: 491; SOURCE 4 GENE: DSBD, NMB1519; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PETNDSBDC103S

KEYWDS IMMUNOGLOBULIN, MUTANT, N-TERMINAL DOMAIN, DISULFIDE BOND KEYWDS 2 REDUCTASE, CYTOCHROME C-TYPE BIOGENESIS, ELECTRON TRANSPORT, KEYWDS 3 INNER MEMBRANE, MEMBRANE, NAD, OXIDOREDUCTASE, REDOX-ACTIVE KEYWDS 4 CENTER, TRANSMEMBRANE, TRANSPORT

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR M.QUINTERNET,L.SELME,P.TSAN,C.BEAUFILS,C.JACOB,S.BOSCHI- AUTHOR 2 MULLER,M.AVERLANT-PETIT,G.BRANLANT,M.CUNG

REVDAT 3 31-MAR-09 2K0R 1 JRNL REVDAT 2 24-FEB-09 2K0R 1 VERSN REVDAT 1 11-NOV-08 2K0R 0

JRNL AUTH M.QUINTERNET,P.TSAN,L.SELME,C.BEAUFILS,C.JACOB, JRNL AUTH 2 S.BOSCHI-MULLER,M.C.AVERLANT-PETIT,G.BRANLANT, JRNL AUTH 3 M.T.CUNG JRNL TITL SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF THE JRNL TITL 2 CYSTEINE 103 TO SERINE MUTANT OF THE N-TERMINAL JRNL TITL 3 DOMAIN OF DSBD FROM NEISSERIA MENINGITIDIS. JRNL REF BIOCHEMISTRY V. 47 12710 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18983169 JRNL DOI 10.1021/BI801343C

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2K0R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB100530.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 3D 1H-15N REMARK 210 NOESY, 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 3 -69.79 -96.21 REMARK 500 1 ASN A 6 177.17 58.50 REMARK 500 1 ALA A 50 57.72 -163.74 REMARK 500 1 LYS A 60 141.14 66.52 REMARK 500 1 PHE A 69 -34.67 -175.01 REMARK 500 1 HIS A 77 -50.97 -172.77 REMARK 500 1 PHE A 119 29.91 -153.98 REMARK 500 1 ASN A 121 -36.84 179.76 REMARK 500 1 GLN A 127 49.19 -91.54 REMARK 500 2 ALA A 2 82.50 -176.10 REMARK 500 2 LEU A 3 83.60 53.32 REMARK 500 2 ASN A 6 174.33 63.23 REMARK 500 2 ASN A 48 160.28 178.15 REMARK 500 2 ALA A 50 65.48 -164.89 REMARK 500 2 LYS A 60 107.66 63.90 REMARK 500 2 PHE A 69 -34.75 -175.05 REMARK 500 2 HIS A 77 -50.94 -175.87 REMARK 500 2 PHE A 119 29.49 -155.70 REMARK 500 2 ASN A 121 -43.28 -177.97 REMARK 500 2 GLN A 127 57.30 -103.85 REMARK 500 3 ALA A 2 74.07 57.30 REMARK 500 3 ALA A 5 59.60 -171.96 REMARK 500 3 ASN A 6 168.00 179.84 REMARK 500 3 ASN A 48 159.95 175.46 REMARK 500 3 ALA A 50 -47.47 -179.21 REMARK 500 3 ASP A 51 38.29 177.52 REMARK 500 3 LYS A 60 107.63 63.69 REMARK 500 3 PHE A 69 -34.79 -174.51 REMARK 500 3 HIS A 77 -48.96 -174.19 REMARK 500 3 PHE A 119 25.93 -148.01 REMARK 500 3 ASN A 121 -49.71 177.19 REMARK 500 3 GLN A 127 45.67 -105.95 REMARK 500 4 ALA A 2 176.61 61.20 REMARK 500 4 ASN A 6 177.71 63.40 REMARK 500 4 ASN A 48 157.40 178.96 REMARK 500 4 ALA A 50 53.78 -165.70 REMARK 500 4 PHE A 69 -35.44 -174.57 REMARK 500 4 HIS A 77 -56.80 -175.54 REMARK 500 4 ALA A 79 91.54 -161.90 REMARK 500 4 PHE A 119 28.21 -154.26 REMARK 500 4 ASN A 121 -33.65 179.88 REMARK 500 4 GLN A 127 54.12 -100.89 REMARK 500 5 ALA A 2 179.74 60.26 REMARK 500 5 ALA A 5 -173.34 -178.06 REMARK 500 5 ASN A 6 -179.98 57.25 REMARK 500 5 ASN A 48 159.41 174.53 REMARK 500 5 LYS A 60 117.61 66.13 REMARK 500 5 PHE A 69 -34.31 -174.42 REMARK 500 5 HIS A 77 -61.07 -177.17 REMARK 500 5 PHE A 119 30.29 -157.87 REMARK 500 5 ASN A 121 -42.10 -179.64 REMARK 500 6 LEU A 3 93.08 60.04 REMARK 500 6 ALA A 5 101.81 -50.38 REMARK 500 6 ASN A 6 34.08 177.50 REMARK 500 6 ASN A 48 161.47 175.04 REMARK 500 6 ALA A 50 -75.24 -149.47 REMARK 500 6 ASP A 51 49.27 -166.54 REMARK 500 6 LYS A 60 109.02 64.19 REMARK 500 6 PHE A 69 -34.07 -174.96 REMARK 500 6 HIS A 77 -53.71 -174.52 REMARK 500 6 PHE A 119 30.07 -156.66 REMARK 500 6 ASN A 121 -42.70 -179.40 REMARK 500 6 GLN A 127 54.76 -100.52 REMARK 500 7 LEU A 3 42.21 -147.48 REMARK 500 7 ALA A 5 71.24 -167.12 REMARK 500 7 ALA A 50 42.54 -148.81 REMARK 500 7 LYS A 60 107.94 -59.01 REMARK 500 7 PHE A 69 -34.06 -175.05 REMARK 500 7 HIS A 77 -51.75 -176.77 REMARK 500 7 VAL A 89 69.79 -111.86 REMARK 500 7 PHE A 119 29.34 -151.55 REMARK 500 7 ASN A 121 -35.05 179.62 REMARK 500 7 GLN A 127 53.22 -109.95 REMARK 500 8 ALA A 5 69.80 -167.31 REMARK 500 8 ASN A 48 160.13 177.51 REMARK 500 8 ALA A 50 54.24 -159.69 REMARK 500 8 LYS A 60 124.07 66.70 REMARK 500 8 PHE A 69 -32.85 -174.74 REMARK 500 8 HIS A 77 -56.52 -178.78 REMARK 500 8 PHE A 119 29.96 -154.25 REMARK 500 8 ASN A 121 -36.79 179.87 REMARK 500 9 ALA A 2 -179.47 60.01 REMARK 500 9 ALA A 5 86.32 -178.45 REMARK 500 9 ASN A 6 34.00 -179.18 REMARK 500 9 ASN A 48 160.07 177.56 REMARK 500 9 ALA A 50 -51.02 -178.74 REMARK 500 9 ASP A 51 39.44 178.25 REMARK 500 9 LYS A 60 116.96 65.77 REMARK 500 9 PHE A 69 -34.47 -174.50 REMARK 500 9 HIS A 77 -60.98 -179.69 REMARK 500 9 PHE A 119 29.92 -154.10 REMARK 500 9 ASN A 121 -42.11 -179.28 REMARK 500 9 GLN A 127 43.71 -106.46 REMARK 500 10 LEU A 3 98.86 61.50 REMARK 500 10 ASN A 6 -175.42 62.63 REMARK 500 10 ALA A 50 -47.85 -151.75 REMARK 500 10 ASP A 51 45.16 179.74 REMARK 500 10 LYS A 60 124.86 66.83 REMARK 500 10 PHE A 69 -34.17 -174.77 REMARK 500 10 HIS A 77 -58.30 -179.91 REMARK 500 10 VAL A 89 132.42 -178.79 REMARK 500 10 PHE A 119 29.15 -161.10 REMARK 500 10 ASN A 121 -45.02 -177.57 REMARK 500 10 GLN A 127 42.75 -102.43 REMARK 500 11 LEU A 3 93.85 -62.73 REMARK 500 11 ASP A 4 29.94 -172.74 REMARK 500 11 ALA A 5 -165.87 49.20 REMARK 500 11 ASP A 7 -0.26 72.60 REMARK 500 11 ASN A 48 161.07 176.22 REMARK 500 11 ALA A 50 -48.49 -178.72 REMARK 500 11 ASP A 51 56.16 177.07 REMARK 500 11 LYS A 60 114.56 65.60 REMARK 500 11 PHE A 69 -33.92 -174.73 REMARK 500 11 HIS A 77 -58.58 -178.75 REMARK 500 11 PHE A 119 28.96 -163.23 REMARK 500 11 ASN A 121 -44.31 -179.27 REMARK 500 11 GLN A 127 57.64 -102.09 REMARK 500 12 ALA A 2 -75.62 -73.96 REMARK 500 12 ALA A 5 -176.83 -175.99 REMARK 500 12 ASN A 6 177.29 58.54 REMARK 500 12 ASN A 48 160.40 178.16 REMARK 500 12 ALA A 50 -49.59 -178.47 REMARK 500 12 ASP A 51 40.51 178.13 REMARK 500 12 PHE A 69 -32.64 -174.99 REMARK 500 12 HIS A 77 -61.48 -171.59 REMARK 500 12 PHE A 119 28.46 -158.32 REMARK 500 12 ASN A 121 -34.85 -179.42 REMARK 500 13 ALA A 5 -168.01 50.25 REMARK 500 13 ALA A 50 -48.62 -158.97 REMARK 500 13 ASP A 51 37.81 178.13 REMARK 500 13 LYS A 60 114.63 65.86 REMARK 500 13 PHE A 69 -34.18 -174.13 REMARK 500 13 HIS A 77 -61.08 -176.45 REMARK 500 13 ALA A 88 129.67 66.81 REMARK 500 13 PHE A 119 30.42 -164.42 REMARK 500 13 ASN A 121 -45.44 -179.62 REMARK 500 13 GLN A 127 55.34 -100.23 REMARK 500 14 ALA A 2 -52.33 -169.70 REMARK 500 14 ASP A 4 -169.80 -107.25 REMARK 500 14 ASN A 6 174.98 62.25 REMARK 500 14 ASN A 48 159.30 171.40 REMARK 500 14 ALA A 50 -48.82 -172.91 REMARK 500 14 ASP A 51 48.31 174.94 REMARK 500 14 PHE A 69 -34.89 -174.77 REMARK 500 14 HIS A 77 -40.93 -174.41 REMARK 500 14 ALA A 79 93.96 -161.57 REMARK 500 14 PHE A 119 30.00 -156.94 REMARK 500 14 ASN A 121 -33.69 179.15 REMARK 500 14 GLN A 127 49.12 -95.58 REMARK 500 15 LEU A 3 177.36 60.72 REMARK 500 15 ALA A 5 76.21 -178.54 REMARK 500 15 ALA A 50 -49.67 -177.59 REMARK 500 15 ASP A 51 52.20 176.59 REMARK 500 15 LYS A 60 95.37 -62.03 REMARK 500 15 PHE A 69 -34.45 -175.63 REMARK 500 15 HIS A 77 -52.34 -173.78 REMARK 500 15 PHE A 119 30.18 -154.70 REMARK 500 15 ASN A 121 -41.12 -179.88 REMARK 500 16 ALA A 2 -67.59 -97.20 REMARK 500 16 ASP A 4 115.27 -179.82 REMARK 500 16 ALA A 5 170.81 64.26 REMARK 500 16 ASN A 6 163.77 65.98 REMARK 500 16 ASN A 48 159.96 176.97 REMARK 500 16 ALA A 50 -39.89 -163.05 REMARK 500 16 ASP A 51 35.49 177.59 REMARK 500 16 LYS A 60 113.87 65.78 REMARK 500 16 PHE A 69 -34.94 -174.46 REMARK 500 16 HIS A 77 -61.41 -179.68 REMARK 500 16 PHE A 119 28.84 -159.43 REMARK 500 16 ASN A 121 -42.77 -179.14 REMARK 500 16 GLN A 127 51.06 -97.88 REMARK 500 17 LEU A 3 109.13 -59.99 REMARK 500 17 ALA A 5 -165.99 49.26 REMARK 500 17 ALA A 50 55.05 -159.80 REMARK 500 17 LYS A 60 121.73 66.36 REMARK 500 17 PHE A 69 -33.96 -174.83 REMARK 500 17 HIS A 77 -57.03 -178.74 REMARK 500 17 ALA A 86 16.34 -144.68 REMARK 500 17 ALA A 88 105.71 -44.22 REMARK 500 17 PHE A 119 28.40 -154.58 REMARK 500 17 ASN A 121 -35.57 -178.72 REMARK 500 17 GLN A 127 48.45 -94.94 REMARK 500 18 ALA A 2 79.91 52.71 REMARK 500 18 ASN A 48 160.15 178.32 REMARK 500 18 ALA A 50 67.57 -169.46 REMARK 500 18 SER A 59 175.07 -53.90 REMARK 500 18 PHE A 69 -34.24 -174.66 REMARK 500 18 HIS A 77 -56.91 -174.18 REMARK 500 18 ALA A 79 93.76 -160.39 REMARK 500 18 PHE A 119 30.53 -157.00 REMARK 500 18 ASN A 121 -44.98 -178.24 REMARK 500 18 GLN A 127 51.25 -96.73 REMARK 500 19 ALA A 2 -173.09 -66.30 REMARK 500 19 LEU A 3 105.81 63.38 REMARK 500 19 ASN A 6 157.80 64.15 REMARK 500 19 ALA A 50 -64.25 -162.57 REMARK 500 19 ASP A 51 44.42 178.58 REMARK 500 19 LYS A 60 126.46 66.88 REMARK 500 19 PHE A 69 -32.95 -174.79 REMARK 500 19 HIS A 77 -57.71 -179.61 REMARK 500 19 ALA A 79 93.44 -162.99 REMARK 500 19 VAL A 89 132.41 -179.05 REMARK 500 19 PHE A 119 30.64 -158.79 REMARK 500 19 ASN A 121 -42.59 -179.16 REMARK 500 19 GLN A 127 50.14 -93.16 REMARK 500 20 ALA A 2 -46.24 -138.94 REMARK 500 20 ASP A 4 -172.33 -172.56 REMARK 500 20 ASN A 6 178.24 -55.05 REMARK 500 20 ALA A 50 -42.16 -161.16 REMARK 500 20 ASP A 51 43.99 179.08 REMARK 500 20 SER A 59 -179.83 -57.65 REMARK 500 20 PHE A 69 -33.19 -174.54 REMARK 500 20 HIS A 77 -37.91 -170.33 REMARK 500 20 ALA A 79 93.31 -163.51 REMARK 500 20 PHE A 83 79.00 -114.92 REMARK 500 20 PHE A 119 29.48 -155.63 REMARK 500 20 ASN A 121 -42.90 -179.26 REMARK 500 20 GLN A 127 47.01 -96.67 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15627 RELATED DB: BMRB

DBREF 2K0R A 2 128 UNP Q9JYM0 DSBD_NEIMB 20 146

SEQADV 2K0R MET A 1 UNP Q9JYM0 EXPRESSION TAG SEQADV 2K0R ASN A 48 UNP Q9JYM0 ASP 66 ENGINEERED SEQADV 2K0R SER A 102 UNP Q9JYM0 CYS 120 ENGINEERED

SEQRES 1 A 128 MET ALA LEU ASP ALA ASN ASP LEU LEU PRO PRO GLU LYS SEQRES 2 A 128 ALA PHE VAL PRO GLU LEU ALA VAL ALA ASP ASP GLY VAL SEQRES 3 A 128 ASN VAL ARG PHE ARG ILE ALA ASP GLY TYR TYR MET TYR SEQRES 4 A 128 GLN ALA LYS ILE VAL GLY LYS THR ASN PRO ALA ASP LEU SEQRES 5 A 128 LEU GLY GLN PRO SER PHE SER LYS GLY GLU GLU LYS GLU SEQRES 6 A 128 ASP GLU PHE PHE GLY ARG GLN THR VAL TYR HIS HIS GLU SEQRES 7 A 128 ALA GLN VAL ALA PHE PRO TYR ALA LYS ALA VAL GLY GLU SEQRES 8 A 128 PRO TYR LYS LEU VAL LEU THR TYR GLN GLY SER ALA GLU SEQRES 9 A 128 ALA GLY VAL CYS TYR PRO PRO VAL ASP THR GLU PHE ASP SEQRES 10 A 128 ILE PHE GLY ASN GLY THR TYR HIS PRO GLN THR

HELIX 1 1 ALA A 5 LEU A 9 5 5

SHEET 1 A 5 SER A 57 PHE A 58 0 SHEET 2 A 5 GLN A 80 PRO A 84 -1 O ALA A 82 N SER A 57 SHEET 3 A 5 GLY A 25 ILE A 32 -1 N VAL A 26 O PHE A 83 SHEET 4 A 5 PHE A 15 VAL A 21 -1 N ALA A 20 O ASN A 27 SHEET 5 A 5 THR A 123 TYR A 124 -1 O TYR A 124 N LEU A 19 SHEET 1 B 5 GLU A 62 GLU A 65 0 SHEET 2 B 5 ARG A 71 TYR A 75 -1 O VAL A 74 N GLU A 62 SHEET 3 B 5 TYR A 36 TYR A 39 -1 N MET A 38 O TYR A 75 SHEET 4 B 5 GLY A 101 ALA A 103 -1 O SER A 102 N TYR A 37 SHEET 5 B 5 VAL A 107 CYS A 108 -1 O VAL A 107 N ALA A 103 SHEET 1 C 3 VAL A 44 ASN A 48 0 SHEET 2 C 3 TYR A 93 TYR A 99 -1 O VAL A 96 N LYS A 46 SHEET 3 C 3 VAL A 112 ILE A 118 -1 O THR A 114 N LEU A 97

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000