10 20 30 40 50 60 70 80 2K0Q - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 12-FEB-08 2K0Q
TITLE SOLUTION STRUCTURE OF COPK, A PERIPLASMIC PROTEIN INVOLVED TITLE 2 IN COPPER RESISTANCE IN CUPRIAVIDUS METALLIDURANS CH34
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN COPK; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUPRIAVIDUS METALLIDURANS; SOURCE 3 STRAIN: CH34; SOURCE 4 GENE: COPK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30
KEYWDS COPPER, HEAVY METAL RESISTANCE, OPEN BARREL, PLASMID- KEYWDS 2 ENCODED, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR B.BERSCH,A.FAVIER,P.SCHANDA,J.COVES,S.VAN AELST,T.VALLAEYS, AUTHOR 2 R.WATTIEZ,M.MERGEAY
REVDAT 3 24-FEB-09 2K0Q 1 VERSN REVDAT 2 01-JUL-08 2K0Q 1 JRNL REVDAT 1 27-MAY-08 2K0Q 0
JRNL AUTH B.BERSCH,A.FAVIER,P.SCHANDA,S.VAN AELST,T.VALLAEYS, JRNL AUTH 2 J.COVES,M.MERGEAY,R.WATTIEZ JRNL TITL MOLECULAR STRUCTURE AND METAL-BINDING PROPERTIES JRNL TITL 2 OF THE PERIPLASMIC COPK PROTEIN EXPRESSED IN JRNL TITL 3 CUPRIAVIDUS METALLIDURANS CH34 DURING COPPER JRNL TITL 4 CHALLENGE. JRNL REF J.MOL.BIOL. V. 380 386 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18533181 JRNL DOI 10.1016/J.JMB.2008.05.017
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.MONCHY,M.A.BENOTMANE,R.WATTIEZ,S.VAN AELST, REMARK 1 AUTH 2 V.AUQUIER,B.BORREMANS,M.MERGEAY,S.TAGHAVI, REMARK 1 AUTH 3 D.VAN DER LELIE,T.VALLAEYS REMARK 1 TITL TRANSCRIPTOMIC AND PROTEOMIC ANALYSES OF THE REMARK 1 TITL 2 PMOL30-ENCODED COPPER RESISTANCE IN CUPRIAVIDUS REMARK 1 TITL 3 METALLIDURANS STRAIN CH34. REMARK 1 REF MICROBIOLOGY V. 152 1765 2006 REMARK 1 REFN ISSN 0026-2617 REMARK 1 PMID 16735739 REMARK 1 DOI 10.1099/MIC.0.28593-0
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, A.T. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ATNOS/CANDID INTERFACED TO CNS, ARIA REMARK 3 1.2 WITH ATNOS/CANDID + DIHEDRAL (TALOS) RESTRAINTS, WATER REMARK 3 REFINEMENT, ARIA 1.2 WITH ATNOS/CANDID, DIHEDRAL (TALOS) AND REMARK 3 RDC RESTRAINTS, WATER REFINEMENT
REMARK 4 REMARK 4 2K0Q COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB100529.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-100% 13C; U-100% REMARK 210 15N] COPK, 50 MM MES, 90% H2O/ REMARK 210 10% D2O; 1.5 MM [U-100% 15N] REMARK 210 COPK, 50 MM MES, 90% H2O/10% REMARK 210 D2O; 1.5 MM COPK, 50 MM MES, 5 REMARK 210 % C12E5, 5 % HEXANOL, 90% H2O/ REMARK 210 10% D2O; 1.5 MM COPK, 50 MM REMARK 210 MES, 100% D2O; 0.5 MM [U-100% REMARK 210 15N] COPK, 50 MM MES, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 3D HNCACB, 3D REMARK 210 H(CCO)NH, 3D C(CO)NH, 3D HCCH- REMARK 210 TOCSY, 2D 1H-1H NOESY, 3D HNCO REMARK 210 -TYPE, RELAXATION, 3D 15N REMARK 210 NOESY-HSQC, 2D-SOFAST REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, DIRECTDRIVE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ, NMRPIPE, NMRVIEW, REMARK 210 NMRDRAW, TALOS, TENSOR, MODULE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 TYR A 10 CE1 TYR A 10 CZ -0.080 REMARK 500 2 TYR A 10 CZ TYR A 10 CE2 0.086 REMARK 500 3 TYR A 10 CE1 TYR A 10 CZ -0.094 REMARK 500 3 TYR A 10 CZ TYR A 10 CE2 0.103 REMARK 500 4 TYR A 10 CE1 TYR A 10 CZ -0.097 REMARK 500 4 TYR A 10 CZ TYR A 10 CE2 0.099 REMARK 500 6 PHE A 60 CZ PHE A 60 CE2 0.119 REMARK 500 8 TYR A 10 CE1 TYR A 10 CZ -0.089 REMARK 500 8 TYR A 10 CZ TYR A 10 CE2 0.097 REMARK 500 9 TYR A 10 CE1 TYR A 10 CZ -0.124 REMARK 500 9 TYR A 10 CZ TYR A 10 CE2 0.140 REMARK 500 10 TYR A 10 CE1 TYR A 10 CZ -0.096 REMARK 500 10 TYR A 10 CZ TYR A 10 CE2 0.095 REMARK 500 12 PHE A 21 CE1 PHE A 21 CZ 0.118 REMARK 500 15 TYR A 10 CE1 TYR A 10 CZ -0.086 REMARK 500 15 TYR A 10 CZ TYR A 10 CE2 0.089 REMARK 500 15 PHE A 60 CZ PHE A 60 CE2 0.142 REMARK 500 16 TYR A 10 CE1 TYR A 10 CZ -0.079 REMARK 500 16 TYR A 10 CZ TYR A 10 CE2 0.080 REMARK 500 19 PHE A 60 CE1 PHE A 60 CZ 0.154 REMARK 500 19 PHE A 60 CZ PHE A 60 CE2 -0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 108.56 67.27 REMARK 500 1 LYS A 31 5.75 -52.84 REMARK 500 1 LEU A 62 15.11 36.97 REMARK 500 1 ASP A 63 -51.45 63.66 REMARK 500 1 GLU A 72 88.21 64.20 REMARK 500 2 LYS A 31 2.76 -50.54 REMARK 500 2 LEU A 62 -13.16 53.03 REMARK 500 2 ASP A 63 148.15 67.06 REMARK 500 2 GLU A 64 -45.83 78.90 REMARK 500 2 ARG A 67 -166.46 -102.30 REMARK 500 3 LYS A 31 -19.54 -49.63 REMARK 500 3 ASN A 57 -1.74 72.59 REMARK 500 3 LEU A 62 14.21 37.81 REMARK 500 3 ASP A 63 76.56 36.31 REMARK 500 3 GLU A 64 -41.19 177.77 REMARK 500 4 LYS A 31 5.66 -56.92 REMARK 500 4 LEU A 62 -35.22 62.23 REMARK 500 4 ASP A 63 -39.66 83.75 REMARK 500 4 HIS A 70 -46.32 -171.43 REMARK 500 4 SER A 71 77.57 -102.57 REMARK 500 5 GLN A 13 -31.26 86.88 REMARK 500 5 LEU A 62 -47.99 57.82 REMARK 500 5 ASP A 63 -26.71 80.78 REMARK 500 5 GLU A 72 -60.93 -133.82 REMARK 500 6 LYS A 31 -2.86 -51.63 REMARK 500 6 LEU A 62 -35.53 59.64 REMARK 500 6 ASP A 63 -48.33 79.33 REMARK 500 6 LYS A 68 5.03 -152.85 REMARK 500 6 SER A 71 102.93 -164.83 REMARK 500 7 ASP A 2 121.15 65.09 REMARK 500 7 GLN A 13 -22.65 94.03 REMARK 500 7 LEU A 62 -17.92 57.67 REMARK 500 7 ASP A 63 -25.38 76.07 REMARK 500 7 ARG A 67 -165.01 -101.94 REMARK 500 8 ASN A 57 -9.35 72.37 REMARK 500 8 LEU A 62 -46.76 58.91 REMARK 500 8 ASP A 63 -46.67 77.09 REMARK 500 8 LYS A 68 65.26 -100.05 REMARK 500 9 LYS A 31 1.91 -53.31 REMARK 500 9 ASN A 57 -9.63 71.85 REMARK 500 9 LEU A 62 5.90 38.44 REMARK 500 9 ASP A 63 168.60 54.17 REMARK 500 9 GLU A 64 -40.60 76.05 REMARK 500 9 HIS A 70 -75.80 -87.21 REMARK 500 10 GLN A 13 -36.58 88.72 REMARK 500 10 LEU A 62 -34.28 62.54 REMARK 500 10 ASP A 63 -43.88 81.83 REMARK 500 10 SER A 71 -57.11 -164.78 REMARK 500 11 LYS A 31 1.70 -58.02 REMARK 500 11 LEU A 62 -25.44 60.40 REMARK 500 11 ASP A 63 60.33 71.18 REMARK 500 11 GLU A 64 -40.92 168.16 REMARK 500 11 LYS A 68 74.18 -107.92 REMARK 500 12 LEU A 62 -37.49 55.72 REMARK 500 12 ASP A 63 -58.73 79.89 REMARK 500 12 HIS A 70 -83.39 -120.00 REMARK 500 12 SER A 71 -152.20 56.97 REMARK 500 12 GLU A 72 -73.99 -153.40 REMARK 500 13 ASP A 2 105.42 67.08 REMARK 500 13 GLN A 13 -24.37 86.87 REMARK 500 13 LYS A 31 5.08 -59.24 REMARK 500 13 GLU A 40 -90.59 -83.75 REMARK 500 13 ASN A 57 -10.66 72.55 REMARK 500 13 LEU A 62 -37.05 59.89 REMARK 500 13 ASP A 63 -34.22 81.54 REMARK 500 13 LYS A 68 78.99 -105.28 REMARK 500 14 GLU A 58 -169.51 -128.06 REMARK 500 14 LEU A 62 -60.04 62.41 REMARK 500 14 ASP A 63 -35.65 139.23 REMARK 500 15 SER A 4 -27.62 73.53 REMARK 500 15 GLN A 13 -32.61 83.68 REMARK 500 15 LYS A 31 5.28 -59.18 REMARK 500 15 LEU A 62 -48.82 74.77 REMARK 500 15 ASP A 63 -56.70 71.29 REMARK 500 15 GLU A 72 -72.26 -82.15 REMARK 500 16 LYS A 31 4.80 -50.90 REMARK 500 16 LEU A 62 -42.01 77.58 REMARK 500 16 ASP A 63 -25.75 71.27 REMARK 500 17 ASP A 2 142.19 69.30 REMARK 500 17 GLN A 13 -34.05 90.84 REMARK 500 17 ASN A 57 -35.24 73.99 REMARK 500 17 LEU A 62 -38.38 75.22 REMARK 500 17 ASP A 63 -57.47 76.28 REMARK 500 17 HIS A 70 -63.66 71.80 REMARK 500 18 GLN A 13 -26.99 82.36 REMARK 500 18 LEU A 62 4.87 41.22 REMARK 500 18 ASP A 63 149.14 55.67 REMARK 500 18 GLU A 64 -22.64 82.66 REMARK 500 18 HIS A 70 38.54 -160.12 REMARK 500 19 LYS A 31 5.23 -55.92 REMARK 500 19 ASN A 57 -13.27 70.69 REMARK 500 19 LEU A 62 -52.12 75.80 REMARK 500 19 ASP A 63 -48.32 72.85 REMARK 500 19 ARG A 67 82.05 41.41 REMARK 500 19 SER A 71 161.77 72.97 REMARK 500 20 ASP A 2 103.57 58.72 REMARK 500 20 LYS A 34 -74.62 -43.91 REMARK 500 20 SER A 35 68.18 89.09 REMARK 500 20 ASN A 57 -24.27 150.39 REMARK 500 20 LEU A 62 -16.41 58.16 REMARK 500 20 ASP A 63 -170.47 174.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 10 0.06 SIDE_CHAIN REMARK 500 3 PHE A 60 0.07 SIDE_CHAIN REMARK 500 4 PHE A 60 0.11 SIDE_CHAIN REMARK 500 7 PHE A 60 0.09 SIDE_CHAIN REMARK 500 9 TYR A 10 0.06 SIDE_CHAIN REMARK 500 10 PHE A 60 0.08 SIDE_CHAIN REMARK 500 12 PHE A 60 0.06 SIDE_CHAIN REMARK 500 14 PHE A 60 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 2K0Q A 1 74 UNP Q58AD3 Q58AD3_RALME 21 94
SEQRES 1 A 74 VAL ASP MET SER ASN VAL VAL LYS THR TYR ASP LEU GLN SEQRES 2 A 74 ASP GLY SER LYS VAL HIS VAL PHE LYS ASP GLY LYS MET SEQRES 3 A 74 GLY MET GLU ASN LYS PHE GLY LYS SER MET ASN MET PRO SEQRES 4 A 74 GLU GLY LYS VAL MET GLU THR ARG ASP GLY THR LYS ILE SEQRES 5 A 74 ILE MET LYS GLY ASN GLU ILE PHE ARG LEU ASP GLU ALA SEQRES 6 A 74 LEU ARG LYS GLY HIS SER GLU GLY GLY
HELIX 1 1 ASP A 63 LYS A 68 1 6
SHEET 1 A 4 VAL A 6 ASP A 11 0 SHEET 2 A 4 LYS A 17 PHE A 21 -1 O VAL A 18 N TYR A 10 SHEET 3 A 4 MET A 26 GLU A 29 -1 O GLU A 29 N LYS A 17 SHEET 4 A 4 SER A 35 MET A 36 -1 O MET A 36 N MET A 28 SHEET 1 B 3 VAL A 43 GLU A 45 0 SHEET 2 B 3 LYS A 51 LYS A 55 -1 O ILE A 52 N MET A 44 SHEET 3 B 3 GLU A 58 ARG A 61 -1 O PHE A 60 N ILE A 53
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000