2K0C - Header Asymmetric Unit

HEADER METAL BINDING PROTEIN 31-JAN-08 2K0C

TITLE ZINC-FINGER 2 OF NUP153

COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PORE COMPLEX PROTEIN NUP153; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RANBP2-TYPE 2 DOMAIN (UNP RESIDUES 703-755); COMPND 5 SYNONYM: NUCLEOPORIN NUP153, 153 KDA NUCLEOPORIN; COMPND 6 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 GENE: NUP153; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-4T1

KEYWDS ZINC-FINGER, DNA-BINDING, METAL-BINDING, MRNA TRANSPORT, KEYWDS 2 NUCLEAR PORE COMPLEX, NUCLEUS, PHOSPHOPROTEIN, PROTEIN KEYWDS 3 TRANSPORT, TRANSLOCATION, TRANSPORT, METAL BINDING PROTEIN

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR J.A.BANGERT,N.SCHRADER,I.R.VETTER,R.STOLL

REVDAT 3 24-FEB-09 2K0C 1 VERSN REVDAT 2 22-JUL-08 2K0C 1 JRNL REVDAT 1 01-JUL-08 2K0C 0

JRNL AUTH N.SCHRADER,C.KOERNER,K.KOESSMEIER,J.A.BANGERT, JRNL AUTH 2 A.WITTINGHOFER,R.STOLL,I.R.VETTER JRNL TITL THE CRYSTAL STRUCTURE OF THE RAN-NUP153ZNF2 JRNL TITL 2 COMPLEX: A GENERAL RAN DOCKING SITE AT THE NUCLEAR JRNL TITL 3 PORE COMPLEX. JRNL REF STRUCTURE V. 16 1116 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18611384 JRNL DOI 10.1016/J.STR.2008.03.014

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : C.D.SCHWIETERS,J.J.KUSZEWSKI,N.TJANDRA,G.M.CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2K0C COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB100515.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.9-1.2 MM NUP153ZNF2, 0.9- REMARK 210 1.2 MM ZINC ION, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 SER A -17 REMARK 465 ASP A -16 REMARK 465 LYS A -15 REMARK 465 PRO A -14 REMARK 465 ALA A -13 REMARK 465 SER A -12 REMARK 465 THR A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLY A -7 REMARK 465 PHE A -6 REMARK 465 GLY A -5 REMARK 465 ASP A -4 REMARK 465 LYS A -3 REMARK 465 PHE A -2 REMARK 465 LYS A -1 REMARK 465 PRO A 0

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 18 -179.43 -51.52 REMARK 500 1 VAL A 19 -47.04 -155.31 REMARK 500 1 CYS A 24 11.90 -140.57 REMARK 500 1 GLU A 25 78.01 40.80 REMARK 500 1 LYS A 28 65.86 63.03 REMARK 500 2 ALA A 18 -172.31 -54.92 REMARK 500 2 VAL A 19 -37.71 -168.91 REMARK 500 2 CYS A 24 13.07 -142.77 REMARK 500 2 GLU A 25 73.08 43.78 REMARK 500 2 THR A 26 157.21 -44.54 REMARK 500 2 LYS A 28 75.17 57.68 REMARK 500 3 VAL A 19 -42.42 -137.50 REMARK 500 3 CYS A 24 83.22 -155.43 REMARK 500 3 GLU A 25 92.09 -33.68 REMARK 500 4 VAL A 19 23.55 -157.38 REMARK 500 4 LYS A 20 75.27 -158.00 REMARK 500 4 CYS A 24 24.39 -149.95 REMARK 500 4 GLU A 25 96.28 36.90 REMARK 500 4 PRO A 27 40.78 -84.62 REMARK 500 5 ALA A 18 -179.46 -52.35 REMARK 500 5 VAL A 19 -43.87 -154.73 REMARK 500 5 CYS A 24 81.91 -153.63 REMARK 500 5 GLU A 25 92.68 -30.37 REMARK 500 5 PRO A 27 41.47 -82.89 REMARK 500 6 ALA A 18 -179.39 -51.96 REMARK 500 6 VAL A 19 -45.68 -155.17 REMARK 500 6 CYS A 24 84.99 -155.45 REMARK 500 6 GLU A 25 92.64 -30.99 REMARK 500 7 ALA A 18 175.85 -52.38 REMARK 500 7 VAL A 19 -41.69 -156.94 REMARK 500 7 CYS A 24 83.66 -155.02 REMARK 500 7 GLU A 25 91.67 -31.45 REMARK 500 7 PRO A 27 44.67 -81.46 REMARK 500 8 ALA A 18 177.45 -52.96 REMARK 500 8 VAL A 19 -43.33 -155.80 REMARK 500 8 GLU A 25 90.81 -30.54 REMARK 500 8 LYS A 28 93.41 51.55 REMARK 500 9 CYS A 10 21.35 -141.31 REMARK 500 9 LYS A 15 172.93 -56.55 REMARK 500 9 ALA A 18 -177.04 -52.54 REMARK 500 9 VAL A 19 -44.83 -155.13 REMARK 500 9 GLU A 25 89.70 -29.24 REMARK 500 9 THR A 26 158.53 -48.01 REMARK 500 9 LYS A 28 106.05 -48.64 REMARK 500 10 ALA A 18 178.91 -50.85 REMARK 500 10 VAL A 19 -41.51 -158.60 REMARK 500 10 CYS A 24 24.60 -146.75 REMARK 500 10 GLU A 25 86.72 28.87 REMARK 500 10 PRO A 27 31.03 -85.45 REMARK 500 11 ALA A 18 174.20 -51.09 REMARK 500 11 VAL A 19 -44.33 -156.44 REMARK 500 11 CYS A 24 16.28 -140.50 REMARK 500 11 GLU A 25 78.36 38.43 REMARK 500 11 LYS A 28 81.27 52.07 REMARK 500 12 VAL A 19 -41.21 -147.05 REMARK 500 12 CYS A 24 21.43 -151.01 REMARK 500 12 GLU A 25 91.45 41.14 REMARK 500 12 PRO A 27 45.94 -77.91 REMARK 500 13 LEU A 11 85.31 48.25 REMARK 500 13 ALA A 18 176.41 -49.90 REMARK 500 13 VAL A 19 -38.89 -160.92 REMARK 500 13 CYS A 24 22.26 -149.97 REMARK 500 13 GLU A 25 94.88 35.77 REMARK 500 13 PRO A 27 47.34 -77.48 REMARK 500 14 ALA A 18 179.04 -51.30 REMARK 500 14 VAL A 19 -39.85 -162.45 REMARK 500 14 CYS A 24 20.11 -147.38 REMARK 500 14 GLU A 25 90.56 42.38 REMARK 500 14 LYS A 28 66.70 62.80 REMARK 500 15 ALA A 18 -179.95 -64.39 REMARK 500 15 VAL A 19 -42.33 -159.94 REMARK 500 15 CYS A 24 80.66 -152.45 REMARK 500 15 GLU A 25 94.47 -31.35 REMARK 500 16 ALA A 18 178.27 -50.53 REMARK 500 16 VAL A 19 -46.89 -152.15 REMARK 500 16 CYS A 24 22.36 -147.00 REMARK 500 16 GLU A 25 85.11 31.54 REMARK 500 16 LYS A 28 73.51 61.23 REMARK 500 17 ALA A 18 -179.91 -54.00 REMARK 500 17 VAL A 19 -43.86 -157.70 REMARK 500 17 CYS A 24 84.52 -153.97 REMARK 500 17 GLU A 25 88.38 -33.07 REMARK 500 17 LYS A 28 67.15 66.25 REMARK 500 18 ALA A 18 179.05 -51.52 REMARK 500 18 VAL A 19 -42.69 -156.36 REMARK 500 18 GLU A 25 92.79 -29.22 REMARK 500 19 ALA A 18 -174.95 -54.22 REMARK 500 19 VAL A 19 -46.01 -155.67 REMARK 500 19 CYS A 24 80.77 -153.57 REMARK 500 19 GLU A 25 93.30 -30.30 REMARK 500 20 CYS A 10 20.87 -141.15 REMARK 500 20 VAL A 19 -43.35 -156.66 REMARK 500 20 CYS A 24 25.25 -155.83 REMARK 500 20 GLU A 25 93.75 33.96 REMARK 500 20 PRO A 27 44.21 -80.70 REMARK 500 REMARK 500 REMARK: NULL

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 54 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 7 SG REMARK 620 2 CYS A 10 SG 110.3 REMARK 620 3 CYS A 21 SG 111.6 105.4 REMARK 620 4 CYS A 24 SG 107.5 111.4 110.8 REMARK 620 N 1 2 3

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 54

DBREF 2K0C A -17 35 UNP P49791 NU153_RAT 703 755

SEQRES 1 A 53 SER ASP LYS PRO ALA SER THR SER GLY THR GLY PHE GLY SEQRES 2 A 53 ASP LYS PHE LYS PRO ALA ILE GLY THR TRP ASP CYS ASP SEQRES 3 A 53 THR CYS LEU VAL GLN ASN LYS PRO GLU ALA VAL LYS CYS SEQRES 4 A 53 VAL ALA CYS GLU THR PRO LYS PRO GLY THR GLY VAL LYS SEQRES 5 A 53 ARG

HET ZN A 54 1

HETNAM ZN ZINC ION

FORMUL 2 ZN ZN 2+

SHEET 1 A 2 TRP A 5 CYS A 7 0 SHEET 2 A 2 VAL A 12 ASN A 14 -1 O VAL A 12 N CYS A 7

LINK SG CYS A 7 ZN ZN A 54 1555 1555 2.54 LINK SG CYS A 10 ZN ZN A 54 1555 1555 2.54 LINK SG CYS A 21 ZN ZN A 54 1555 1555 2.54 LINK SG CYS A 24 ZN ZN A 54 1555 1555 2.54

SITE 1 AC1 1 CYS A 7

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000