10 20 30 40 50 60 70 80 2JZV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ISOMERASE 21-JAN-08 2JZV
TITLE SOLUTION STRUCTURE OF S. AUREUS PRSA-PPIASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOLDASE PROTEIN PRSA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 140-245; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: ATCC 292B; SOURCE 5 GENE: PRSA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PGEX-2T
KEYWDS PPIASE, PARVULIN, FOLDASE, STAPHYLOCOCCUS AUREUS, PROLINE KEYWDS 2 ISOMERASE, LIPOPROTEIN, MEMBRANE, PALMITATE, ROTAMASE
EXPDTA SOLUTION NMR
NUMMDL 25
AUTHOR R.SEPPALA,H.TOSSAVAINEN,S.HEIKKINEN,H.KOSKELA,V.KONTINEN, AUTHOR 2 P.PERMI
REVDAT 2 31-MAR-09 2JZV 1 JRNL REVDAT 1 20-JAN-09 2JZV 0
JRNL AUTH O.HEIKKINEN,R.SEPPALA,H.TOSSAVAINEN,S.HEIKKINEN, JRNL AUTH 2 H.KOSKELA,P.PERMI,I.KILPELAINEN JRNL TITL SOLUTION STRUCTURE OF THE PARVULIN-TYPE PPIASE JRNL TITL 2 DOMAIN OF STAPHYLOCOCCUS AUREUS PRSA - JRNL TITL 3 IMPLICATIONS FOR THE CATALYTIC MECHANISM OF JRNL TITL 4 PARVULINS. JRNL REF BMC STRUCT.BIOL. V. 9 17 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19309529 JRNL DOI 10.1186/1472-6807-9-17
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE REFINED WITH REMARK 3 MOLECULAR DYNAMICS USING BORN IMPLICIT SOLVENT MODEL IN AMBER REMARK 3 8.0
REMARK 4 REMARK 4 2JZV COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB100498.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-15N] PRSA-PPIASE, REMARK 210 20 MM BIS-TRIS, 1 MM SODIUM REMARK 210 AZIDE, 1 MM EDTA, 92% H2O/8% REMARK 210 D2O; 1 MM [U-15N] PRSA-PPIASE, REMARK 210 20 MM BIS-TRIS, 1 MM SODIUM REMARK 210 AZIDE, 1 MM EDTA, 92% H2O/8% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D CBCA(CO)NH, 3D C(CO) REMARK 210 NH, 3D HNCO, 3D HNCACB, 3D REMARK 210 HN(CO)CA, 3D H(CCO)NH, 3D HCCH REMARK 210 -TOCSY, 3D HCCH-COSY, 3D 1H- REMARK 210 15N NOESY, 3D 1H-13C NOESY, 3D REMARK 210 IHNCA, 3D 1H-13C NOESY (AROM), REMARK 210 (H )C (C C )H, (H )C (C C C ) REMARK 210 H, J(CN) INTENSITY MODULATED REMARK 210 CONSTANT TIME 13C-HSQC, 3D R1 REMARK 210 RESOLVED 1H-15N-HSQC, 3D R2 REMARK 210 RESOLVED 1H-15N-HSQC, EXCHANGE REMARK 210 RATE RESOLVED 1H-15N-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, SPARKY 3.110, REMARK 210 TALOS 2003.027.13.05, CYANA REMARK 210 2.1, PROCHECKNMR, WHAT_CHECK REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 229 -107.21 -80.40 REMARK 500 1 GLU A 230 -177.26 -173.28 REMARK 500 2 GLU A 159 133.00 -170.82 REMARK 500 2 ASP A 201 31.98 74.00 REMARK 500 2 ASP A 244 -163.89 -100.02 REMARK 500 3 LYS A 158 -23.03 69.66 REMARK 500 6 ASP A 140 30.36 -143.47 REMARK 500 6 ASP A 180 89.75 -151.59 REMARK 500 7 ASP A 201 25.18 83.83 REMARK 500 9 ASP A 140 46.23 -76.40 REMARK 500 11 SER A -1 -106.24 -96.95 REMARK 500 11 ASP A 201 31.45 76.49 REMARK 500 15 ASP A 201 33.69 81.83 REMARK 500 16 ASP A 244 -167.58 -111.69 REMARK 500 17 LYS A 154 3.86 56.07 REMARK 500 17 ASP A 201 29.08 81.59 REMARK 500 18 ASP A 180 86.50 -151.47 REMARK 500 20 GLU A 159 -95.35 -80.56 REMARK 500 21 ASP A 180 86.74 -157.11 REMARK 500 22 ASP A 180 84.24 -152.46 REMARK 500 23 ASP A 201 20.11 81.41 REMARK 500 25 ASP A 201 31.75 82.74 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2JZV A 140 245 UNP P60747 PRSA_STAAM 140 245
SEQADV 2JZV GLY A -5 UNP P60747 EXPRESSION TAG SEQADV 2JZV PRO A -4 UNP P60747 EXPRESSION TAG SEQADV 2JZV LEU A -3 UNP P60747 EXPRESSION TAG SEQADV 2JZV GLY A -2 UNP P60747 EXPRESSION TAG SEQADV 2JZV SER A -1 UNP P60747 EXPRESSION TAG
SEQRES 1 A 111 GLY PRO LEU GLY SER ASP SER LYS LYS ALA SER HIS ILE SEQRES 2 A 111 LEU ILE LYS VAL LYS SER LYS LYS SER ASP LYS GLU GLY SEQRES 3 A 111 LEU ASP ASP LYS GLU ALA LYS GLN LYS ALA GLU GLU ILE SEQRES 4 A 111 GLN LYS GLU VAL SER LYS ASP PRO SER LYS PHE GLY GLU SEQRES 5 A 111 ILE ALA LYS LYS GLU SER MET ASP THR GLY SER ALA LYS SEQRES 6 A 111 LYS ASP GLY GLU LEU GLY TYR VAL LEU LYS GLY GLN THR SEQRES 7 A 111 ASP LYS ASP PHE GLU LYS ALA LEU PHE LYS LEU LYS ASP SEQRES 8 A 111 GLY GLU VAL SER GLU VAL VAL LYS SER SER PHE GLY TYR SEQRES 9 A 111 HIS ILE ILE LYS ALA ASP LYS
HELIX 1 1 ASP A 162 LYS A 179 1 18 HELIX 2 2 LYS A 183 SER A 192 1 10 HELIX 3 3 ASP A 194 LYS A 199 1 6 HELIX 4 4 ASP A 213 LYS A 222 1 10
SHEET 1 A 4 GLU A 203 LEU A 208 0 SHEET 2 A 4 SER A 141 LYS A 150 -1 N LYS A 142 O VAL A 207 SHEET 3 A 4 GLY A 237 ALA A 243 -1 O TYR A 238 N ILE A 149 SHEET 4 A 4 VAL A 232 SER A 234 -1 N VAL A 232 O HIS A 239
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000