2JZO - Header Asymmetric Unit

HEADER TRANSFERASE 10-JAN-08 2JZO

TITLE SOLUTION NMR STRUCTURE OF THE NON-PRODUCTIVE COMPLEX TITLE 2 BETWEEN IIAMANNOSE AND IIBMANNOSE OF THE MANNOSE TITLE 3 TRANSPORTER OF THE E. COLI PHOSPHOTRANSFERASE SYSTEM

COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTS SYSTEM MANNOSE-SPECIFIC EIIAB COMPONENT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PTS EIIB TYPE-4 DOMAIN; COMPND 5 SYNONYM: EIIAB-MAN, MANNOSE-SPECIFIC PHOSPHOTRANSFERASE COMPND 6 ENZYME IIB COMPONENT, PTS SYSTEM MANNOSE-SPECIFIC EIIB COMPND 7 COMPONENT; COMPND 8 EC: 2.7.1.69; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PTS SYSTEM MANNOSE-SPECIFIC EIIAB COMPONENT; COMPND 12 CHAIN: D; COMPND 13 FRAGMENT: PTS EIIA TYPE-4 DOMAIN; COMPND 14 SYNONYM: EIIAB-MAN, MANNOSE-SPECIFIC PHOSPHOTRANSFERASE COMPND 15 ENZYME IIA COMPONENT, PTS SYSTEM MANNOSE-SPECIFIC EIIA COMPND 16 COMPONENT, EIII-MAN; COMPND 17 EC: 2.7.1.-; COMPND 18 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MANX, GPTB, PTSL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET32A MODIFIED; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 GENE: MANX, GPTB, PTSL; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET32A MODIFIED

KEYWDS PHOSPHOTRANSFERASE, SUGAR TRANSPORT, TRANSFERASE, COMPLEX KEYWDS 2 TRANSFERASE/PHOSPHOCARRIER, CYTOPLASM, MEMBRANE, KEYWDS 3 PHOSPHOPROTEIN, PHOSPHOTRANSFERASE SYSTEM

EXPDTA SOLUTION NMR

MDLTYP MINIMIZED AVERAGE

AUTHOR G.CLORE,J.HU,K.HU

REVDAT 3 24-FEB-09 2JZO 1 VERSN REVDAT 2 06-MAY-08 2JZO 1 JRNL REVDAT 1 19-FEB-08 2JZO 0

JRNL AUTH J.HU,K.HU,D.C.WILLIAMS,M.E.KOMLOSH,M.CAI,G.M.CLORE JRNL TITL SOLUTION NMR STRUCTURES OF PRODUCTIVE AND JRNL TITL 2 NON-PRODUCTIVE COMPLEXES BETWEEN THE A AND B JRNL TITL 3 DOMAINS OF THE CYTOPLASMIC SUBUNIT OF THE MANNOSE JRNL TITL 4 TRANSPORTER OF THE ESCHERICHIA COLI JRNL TITL 5 PHOSPHOTRANSFERASE SYSTEM. JRNL REF J.BIOL.CHEM. V. 283 11024 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18270202 JRNL DOI 10.1074/JBC.M800312200

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.18.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BACKBONE COORDINATES OF PRODUCTIVE REMARK 3 IIAMAN-IIBMAN COMPLEX (2JZN) ARE HELD FIXED, COORDINATES OF REMARK 3 IIBMAN (1JZH) REPRESENTING THE NON-PRODUCTIVE COMPLEX IS FREE REMARK 3 TO ROTATE AND TRANSLATE; THE INTERFACIAL SIDE CHAINS ARE GIVEN REMARK 3 TORSIONAL DEGREES OF FREEDOM; ATOMIC OVERLAP IS ALLOWED REMARK 3 BETWEEN THE TWO MOLECULES OF IIBMAN REPRESENTING THE REMARK 3 PRODUCTIVE AND NON-PRODUCTIVE COMPLEXES SINCE THE TWO REMARK 3 COMPLEXES DO NOT CO-EXIST; AND THE INTERPROTON DISTANCE REMARK 3 RESTRAINTS ARE TREATED AS (SIGMAR-6)-1/6 SUMS SINCE THE NOES REMARK 3 ARISE FROM A MIXTURE OF PRODUCTIVE AND NON-PRODUCTIVE REMARK 3 COMPLEXES. FURTHER DETAILS IN PUBLICATION.

REMARK 4 REMARK 4 2JZO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-08. REMARK 100 THE RCSB ID CODE IS RCSB100491.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM IIAMAN+IIBMAN, 90% REMARK 210 H2O/10% D2O; 0.5-1 MM IIAMAN+ REMARK 210 IIBMAN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TRIPLE RESONANCE, 12C- REMARK 210 FILTERED/13C-SEPARATED NOE, REMARK 210 12C-SEPARATED/12C-FILTERED REMARK 210 NOE, 13C-SEPARATED/15N-EDITED REMARK 210 NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX500, DMX600, DRX600, DRX800 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH 2.18.1 REMARK 210 METHOD USED : CONJOINED RIGID BODY/TORSION REMARK 210 ANGLE SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : RESTRAINED REGULARIZED MEAN REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: TRIPLE RESONANCE EXPERIMENTS FOR ASSIGNMENT. REMARK 210 QUANTITATIVE J CORRELATION EXPERIMENTS FOR HETERONUCLEAR REMARK 210 SCALAR COUPLINGS. 3D AND 2D ISOTOPE FILTERED/ISOTOPE-SEPARATED REMARK 210 NOE EXPERIMENTS FOR INTERMOLECULAR NOES.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 ALA A 131 REMARK 465 LYS A 132 REMARK 465 PRO A 133 REMARK 465 VAL A 134 REMARK 465 ALA B 131 REMARK 465 LYS B 132 REMARK 465 PRO B 133 REMARK 465 VAL B 134

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 22 CG GLU B 27 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 105 CD ARG A 105 NE 0.198 REMARK 500 LYS A 130 C LYS A 130 O 0.204 REMARK 500 ARG B 105 CD ARG B 105 NE 0.131 REMARK 500 LYS B 130 C LYS B 130 O 0.204 REMARK 500 LYS D 323 C LYS D 323 O 0.295 REMARK 500 LYS D 323 C LYS D 323 OXT 0.257 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 105 CD - NE - CZ ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 105 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 105 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 LYS A 130 CA - C - O ANGL. DEV. = 25.6 DEGREES REMARK 500 ARG B 105 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 123 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 123 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 LYS B 130 CA - C - O ANGL. DEV. = 25.6 DEGREES REMARK 500 LYS D 184 CD - CE - NZ ANGL. DEV. = -70.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 82 -55.39 -29.09 REMARK 500 VAL B 82 -55.40 -29.11 REMARK 500 TYR D 161 -141.90 -118.62 REMARK 500 LEU D 166 147.94 -172.13 REMARK 500 ASP D 170 117.07 -165.88 REMARK 500 LEU D 173 -99.77 56.06 REMARK 500 PRO D 233 0.50 -64.97 REMARK 500 ALA D 280 27.07 -148.17 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PDO RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF IIAMANNOSE REMARK 900 RELATED ID: 2JZH RELATED DB: PDB REMARK 900 NMR STRUCTURE OF IIBMANNOSE REMARK 900 RELATED ID: 2JZN RELATED DB: PDB REMARK 900 STRUCTURE OF PRODCUTIVE IIAMANNOSE(H10E)-IIBMANNOSE COMPLEX REMARK 900 RELATED ID: 1VSQ RELATED DB: PDB REMARK 900 STRUCTURE OF PRODCUTIVE IIAMANNOSE(H10E)-IIBMANNOSE COMPLEX

DBREF 2JZO A 2 134 UNP P69797 PTNAB_ECOLI 2 134 DBREF 2JZO B 2 134 UNP P69797 PTNAB_ECOLI 2 134 DBREF 2JZO D 159 323 UNP P69797 PTNAB_ECOLI 159 323

SEQRES 1 A 133 THR ILE ALA ILE VAL ILE GLY THR HIS GLY TRP ALA ALA SEQRES 2 A 133 GLU GLN LEU LEU LYS THR ALA GLU MET LEU LEU GLY GLU SEQRES 3 A 133 GLN GLU ASN VAL GLY TRP ILE ASP PHE VAL PRO GLY GLU SEQRES 4 A 133 ASN ALA GLU THR LEU ILE GLU LYS TYR ASN ALA GLN LEU SEQRES 5 A 133 ALA LYS LEU ASP THR THR LYS GLY VAL LEU PHE LEU VAL SEQRES 6 A 133 ASP THR TRP GLY GLY SER PRO PHE ASN ALA ALA SER ARG SEQRES 7 A 133 ILE VAL VAL ASP LYS GLU HIS TYR GLU VAL ILE ALA GLY SEQRES 8 A 133 VAL ASN ILE PRO MET LEU VAL GLU THR LEU MET ALA ARG SEQRES 9 A 133 ASP ASP ASP PRO SER PHE ASP GLU LEU VAL ALA LEU ALA SEQRES 10 A 133 VAL GLU THR GLY ARG GLU GLY VAL LYS ALA LEU LYS ALA SEQRES 11 A 133 LYS PRO VAL SEQRES 1 B 133 THR ILE ALA ILE VAL ILE GLY THR HIS GLY TRP ALA ALA SEQRES 2 B 133 GLU GLN LEU LEU LYS THR ALA GLU MET LEU LEU GLY GLU SEQRES 3 B 133 GLN GLU ASN VAL GLY TRP ILE ASP PHE VAL PRO GLY GLU SEQRES 4 B 133 ASN ALA GLU THR LEU ILE GLU LYS TYR ASN ALA GLN LEU SEQRES 5 B 133 ALA LYS LEU ASP THR THR LYS GLY VAL LEU PHE LEU VAL SEQRES 6 B 133 ASP THR TRP GLY GLY SER PRO PHE ASN ALA ALA SER ARG SEQRES 7 B 133 ILE VAL VAL ASP LYS GLU HIS TYR GLU VAL ILE ALA GLY SEQRES 8 B 133 VAL ASN ILE PRO MET LEU VAL GLU THR LEU MET ALA ARG SEQRES 9 B 133 ASP ASP ASP PRO SER PHE ASP GLU LEU VAL ALA LEU ALA SEQRES 10 B 133 VAL GLU THR GLY ARG GLU GLY VAL LYS ALA LEU LYS ALA SEQRES 11 B 133 LYS PRO VAL SEQRES 1 D 165 ASN ASP TYR MET VAL ILE GLY LEU ALA ARG ILE ASP ASP SEQRES 2 D 165 ARG LEU ILE HIS GLY GLN VAL ALA THR ARG TRP THR LYS SEQRES 3 D 165 GLU THR ASN VAL SER ARG ILE ILE VAL VAL SER ASP GLU SEQRES 4 D 165 VAL ALA ALA ASP THR VAL ARG LYS THR LEU LEU THR GLN SEQRES 5 D 165 VAL ALA PRO PRO GLY VAL THR ALA HIS VAL VAL ASP VAL SEQRES 6 D 165 ALA LYS MET ILE ARG VAL TYR ASN ASN PRO LYS TYR ALA SEQRES 7 D 165 GLY GLU ARG VAL MET LEU LEU PHE THR ASN PRO THR ASP SEQRES 8 D 165 VAL GLU ARG LEU VAL GLU GLY GLY VAL LYS ILE THR SER SEQRES 9 D 165 VAL ASN VAL GLY GLY MET ALA PHE ARG GLN GLY LYS THR SEQRES 10 D 165 GLN VAL ASN ASN ALA VAL SER VAL ASP GLU LYS ASP ILE SEQRES 11 D 165 GLU ALA PHE LYS LYS LEU ASN ALA ARG GLY ILE GLU LEU SEQRES 12 D 165 GLU VAL ARG LYS VAL SER THR ASP PRO LYS LEU LYS MET SEQRES 13 D 165 MET ASP LEU ILE SER LYS ILE ASP LYS

HELIX 1 1 TRP A 12 GLY A 26 1 15 HELIX 2 2 ASN A 41 ALA A 54 1 14 HELIX 3 3 GLY A 71 VAL A 82 1 12 HELIX 4 4 ASN A 94 ASP A 106 1 13 HELIX 5 5 SER A 110 GLY A 125 1 16 HELIX 6 6 TRP B 12 GLY B 26 1 15 HELIX 7 7 ASN B 41 ALA B 54 1 14 HELIX 8 8 GLY B 71 VAL B 82 1 12 HELIX 9 9 ASN B 94 ASP B 106 1 13 HELIX 10 10 SER B 110 GLY B 125 1 16 HELIX 11 11 GLN D 177 THR D 186 1 10 HELIX 12 12 SER D 195 ALA D 200 1 6 HELIX 13 13 ASP D 201 VAL D 211 1 11 HELIX 14 14 ASP D 222 ASN D 231 1 10 HELIX 15 15 ASN D 232 ALA D 236 5 5 HELIX 16 16 ASN D 246 GLY D 256 1 11 HELIX 17 17 ASP D 284 ARG D 297 1 14 HELIX 18 18 MET D 314 LYS D 320 1 7

SHEET 1 A 5 VAL A 31 ILE A 34 0 SHEET 2 A 5 ALA A 4 GLY A 8 1 N ILE A 5 O GLY A 32 SHEET 3 A 5 VAL A 62 VAL A 66 1 O LEU A 65 N VAL A 6 SHEET 4 A 5 TYR A 87 ALA A 91 1 O GLU A 88 N PHE A 64 SHEET 5 A 5 LYS B 127 ALA B 128 -1 O LYS B 127 N ALA A 91 SHEET 1 B 5 LYS A 127 ALA A 128 0 SHEET 2 B 5 TYR B 87 ALA B 91 -1 O ALA B 91 N LYS A 127 SHEET 3 B 5 VAL B 62 VAL B 66 1 N PHE B 64 O GLU B 88 SHEET 4 B 5 ALA B 4 GLY B 8 1 N VAL B 6 O LEU B 65 SHEET 5 B 5 VAL B 31 ILE B 34 1 O GLY B 32 N ILE B 5 SHEET 1 C 7 THR D 217 VAL D 221 0 SHEET 2 C 7 ARG D 190 VAL D 194 1 N VAL D 193 O HIS D 219 SHEET 3 C 7 ARG D 239 PHE D 244 1 O MET D 241 N ILE D 192 SHEET 4 C 7 VAL D 163 ASP D 170 1 N ASP D 170 O PHE D 244 SHEET 5 C 7 SER D 262 GLY D 267 1 O ASN D 264 N ILE D 169 SHEET 6 C 7 GLU D 300 VAL D 303 1 O GLU D 300 N VAL D 263 SHEET 7 C 7 LEU D 312 LYS D 313 -1 O LEU D 312 N VAL D 303 SHEET 1 D 2 THR D 275 GLN D 276 0 SHEET 2 D 2 SER D 282 VAL D 283 -1 O VAL D 283 N THR D 275

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000