10 20 30 40 50 60 70 80 2JZK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CARBOHYDRATE BINDING PROTEIN 09-JAN-08 2JZK
TITLE STRUCTURE OF TBCVNH (T. BORCHII CVNH) (CASP TARGET)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYANOVIRIN-N HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYANOVIRIN-N-LIKE PROTEIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TUBER BORCHII; SOURCE 3 ORGANISM_COMMON: WHITISH TRUFFLE; SOURCE 4 ORGANISM_TAXID: 42251; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS CVNH, NMR, ANTIVIRAL PROTEIN, CARBOHYDRATE BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 30
AUTHOR L.M.I.KOHARUDIN,A.R.VISCOMI,J.JEE,S.OTTONELLO,A.M.GRONENBORN
REVDAT 3 24-FEB-09 2JZK 1 VERSN REVDAT 2 21-OCT-08 2JZK 1 JRNL REVDAT 1 25-MAR-08 2JZK 0
JRNL AUTH L.M.KOHARUDIN,A.R.VISCOMI,J.G.JEE,S.OTTONELLO, JRNL AUTH 2 A.M.GRONENBORN JRNL TITL THE EVOLUTIONARILY CONSERVED FAMILY OF JRNL TITL 2 CYANOVIRIN-N HOMOLOGS: STRUCTURES AND CARBOHYDRATE JRNL TITL 3 SPECIFICITY. JRNL REF STRUCTURE V. 16 570 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18400178 JRNL DOI 10.1016/J.STR.2008.01.015
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SA USING CNS FOLLOWED BY EXPLICIT REMARK 3 WATER REFINEMENT IMPLEMENETD IN ARIA
REMARK 4 REMARK 4 2JZK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB100487.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 15N] TBCVNH, REMARK 210 20 MM SODIUM PHOSPHATE, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.0 MM [U-100% 13C; U-100% REMARK 210 15N] TBCVNH, 20 MM SODIUM REMARK 210 PHOSPHATE, 0.02 % SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 3D CBCA(CO) REMARK 210 NH, 3D HNCACB, 3D HCCH-TOCSY, REMARK 210 3D H(CCO)NH, 3D (H)C(CO)NH, REMARK 210 15N-NOESY HSQC, 13C-NOESY HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 700 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, NMRVIEW, REMARK 210 CYANA, CNS, TALOS, ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 800 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 43 46.28 -159.53 REMARK 500 1 GLU A 66 33.78 -80.91 REMARK 500 1 ARG A 83 -145.34 173.90 REMARK 500 1 LEU A 90 61.71 -107.30 REMARK 500 2 ASN A 43 47.78 -162.42 REMARK 500 2 ASP A 61 77.12 56.25 REMARK 500 2 ARG A 83 -150.45 169.30 REMARK 500 2 LEU A 90 40.23 -101.52 REMARK 500 2 ASN A 97 19.49 58.06 REMARK 500 3 SER A 6 33.80 -140.67 REMARK 500 3 ASN A 43 53.91 -159.91 REMARK 500 3 MET A 52 -156.05 -153.57 REMARK 500 3 ASP A 61 82.89 58.53 REMARK 500 3 ARG A 83 -152.42 168.65 REMARK 500 3 LEU A 90 44.60 -106.82 REMARK 500 4 SER A 6 30.09 -141.22 REMARK 500 4 ASN A 43 48.31 -157.57 REMARK 500 4 ASP A 61 79.73 61.62 REMARK 500 4 GLU A 65 -65.70 -93.52 REMARK 500 4 ARG A 83 -154.92 170.53 REMARK 500 4 LEU A 90 37.08 -98.59 REMARK 500 5 CYS A 40 -14.80 -140.63 REMARK 500 5 ASN A 43 52.03 -161.72 REMARK 500 5 ASP A 61 76.36 50.22 REMARK 500 5 GLU A 65 -66.26 -92.17 REMARK 500 5 GLU A 66 40.98 -78.60 REMARK 500 5 ARG A 83 -154.03 163.44 REMARK 500 5 GLN A 86 -165.78 -169.07 REMARK 500 5 LEU A 90 40.02 -109.44 REMARK 500 6 CYS A 40 -3.86 -141.48 REMARK 500 6 ASN A 43 45.19 -159.69 REMARK 500 6 ASP A 61 82.62 65.58 REMARK 500 6 GLU A 66 39.13 -89.02 REMARK 500 6 ARG A 83 -143.15 177.35 REMARK 500 6 LEU A 90 42.06 -96.70 REMARK 500 7 SER A 6 33.70 -149.50 REMARK 500 7 ASN A 43 48.37 -152.95 REMARK 500 7 MET A 52 -156.94 -107.86 REMARK 500 7 ASP A 61 78.44 54.00 REMARK 500 7 GLU A 66 34.90 -84.71 REMARK 500 7 ARG A 83 -154.88 167.04 REMARK 500 7 LEU A 90 41.28 -104.71 REMARK 500 8 ASN A 43 56.37 -163.64 REMARK 500 8 MET A 52 -158.07 -91.69 REMARK 500 8 ASP A 61 73.81 54.01 REMARK 500 8 ARG A 83 -158.94 162.62 REMARK 500 9 SER A 6 29.23 -148.07 REMARK 500 9 ASN A 43 45.16 -153.30 REMARK 500 9 MET A 52 -153.12 -95.00 REMARK 500 9 ARG A 83 -151.82 172.34 REMARK 500 9 LEU A 90 34.43 -97.88 REMARK 500 10 ARG A 17 -32.25 -143.13 REMARK 500 10 ASN A 43 57.98 -159.40 REMARK 500 10 ASP A 61 78.41 60.01 REMARK 500 10 ARG A 83 -154.94 169.26 REMARK 500 11 ARG A 17 -30.37 -142.91 REMARK 500 11 ASN A 43 50.68 -154.24 REMARK 500 11 GLU A 65 -75.27 -89.17 REMARK 500 11 GLU A 66 45.53 -77.87 REMARK 500 11 ARG A 83 -149.48 174.13 REMARK 500 11 LEU A 90 56.48 -108.38 REMARK 500 12 ASN A 43 48.86 -152.44 REMARK 500 12 MET A 52 -154.66 -96.75 REMARK 500 12 ASP A 61 79.31 58.22 REMARK 500 12 ARG A 83 -150.40 167.84 REMARK 500 12 LEU A 90 46.55 -102.04 REMARK 500 13 SER A 6 29.63 -140.19 REMARK 500 13 ASN A 43 54.35 -163.86 REMARK 500 13 ASP A 61 72.07 61.34 REMARK 500 13 GLU A 65 -67.08 -91.23 REMARK 500 13 GLU A 66 42.29 -74.88 REMARK 500 13 ARG A 83 -152.49 165.54 REMARK 500 13 LEU A 90 45.03 -101.05 REMARK 500 13 ASN A 97 19.39 59.78 REMARK 500 14 ARG A 17 -29.28 -141.46 REMARK 500 14 ASN A 43 52.44 -157.14 REMARK 500 14 ASP A 61 72.51 47.25 REMARK 500 14 GLU A 65 -66.10 -92.76 REMARK 500 14 GLU A 66 46.10 -81.65 REMARK 500 14 ARG A 83 -152.86 167.13 REMARK 500 14 GLN A 86 -161.90 -168.35 REMARK 500 14 LEU A 90 50.32 -104.94 REMARK 500 15 ASN A 43 50.17 -163.35 REMARK 500 15 ASP A 61 83.65 63.63 REMARK 500 15 GLU A 66 38.44 -78.19 REMARK 500 15 ARG A 83 -160.14 172.05 REMARK 500 15 LEU A 90 40.88 -106.08 REMARK 500 16 ASN A 43 46.62 -157.04 REMARK 500 16 ASN A 54 63.37 66.82 REMARK 500 16 ASP A 61 84.65 61.10 REMARK 500 16 GLU A 66 34.80 -79.54 REMARK 500 16 ARG A 83 -157.57 166.60 REMARK 500 16 LEU A 90 40.46 -105.74 REMARK 500 17 SER A 6 39.21 -140.92 REMARK 500 17 ASN A 43 48.53 -160.57 REMARK 500 17 ASN A 54 61.21 69.40 REMARK 500 17 GLU A 66 36.26 -83.81 REMARK 500 17 ARG A 83 -160.13 170.80 REMARK 500 17 LEU A 90 45.69 -99.44 REMARK 500 18 SER A 6 35.48 -146.66 REMARK 500 18 ARG A 17 -31.89 -142.52 REMARK 500 18 ASN A 43 43.92 -158.20 REMARK 500 18 ASP A 61 80.39 58.43 REMARK 500 18 ARG A 83 -158.25 167.52 REMARK 500 19 ASN A 43 44.24 -160.95 REMARK 500 19 ASP A 61 74.59 49.93 REMARK 500 19 ARG A 83 -149.08 167.36 REMARK 500 19 LEU A 90 43.38 -101.98 REMARK 500 20 ASN A 43 47.94 -157.11 REMARK 500 20 ASP A 61 79.60 57.34 REMARK 500 20 GLU A 65 -70.84 -100.68 REMARK 500 20 GLU A 66 49.00 -74.67 REMARK 500 20 ARG A 83 -148.39 171.63 REMARK 500 20 LEU A 90 43.50 -106.73 REMARK 500 21 SER A 6 33.98 -149.25 REMARK 500 21 ARG A 17 -34.01 -137.78 REMARK 500 21 CYS A 40 -5.41 -140.49 REMARK 500 21 ASN A 43 48.15 -155.28 REMARK 500 21 ASP A 61 75.94 52.35 REMARK 500 21 GLU A 66 31.43 -88.68 REMARK 500 21 ARG A 83 -153.13 167.38 REMARK 500 22 ASN A 43 54.15 -162.30 REMARK 500 22 ASP A 61 80.22 58.88 REMARK 500 22 ARG A 83 -148.25 171.37 REMARK 500 22 LEU A 90 41.17 -106.35 REMARK 500 23 ASN A 43 43.79 -164.81 REMARK 500 23 ASP A 61 84.48 60.29 REMARK 500 23 GLU A 65 -62.14 -105.34 REMARK 500 23 GLU A 66 42.93 -79.21 REMARK 500 23 ARG A 83 -154.21 175.06 REMARK 500 23 LEU A 90 41.25 -106.27 REMARK 500 24 ARG A 17 -33.46 -135.57 REMARK 500 24 ASN A 43 47.26 -161.92 REMARK 500 24 ASP A 61 63.04 62.30 REMARK 500 24 ARG A 83 -153.36 169.78 REMARK 500 24 LEU A 90 44.19 -109.84 REMARK 500 25 SER A 6 39.53 -145.90 REMARK 500 25 ASN A 43 40.38 -153.47 REMARK 500 25 ASP A 61 73.21 58.62 REMARK 500 25 ARG A 83 -151.03 163.92 REMARK 500 25 LEU A 90 46.36 -107.59 REMARK 500 26 ARG A 17 -32.19 -140.87 REMARK 500 26 ASN A 43 50.20 -160.88 REMARK 500 26 ASP A 61 77.69 56.66 REMARK 500 26 GLU A 65 -61.56 -90.81 REMARK 500 26 ARG A 83 -145.34 169.33 REMARK 500 27 SER A 6 37.05 -144.27 REMARK 500 27 ARG A 17 -32.73 -138.06 REMARK 500 27 ASN A 43 45.25 -162.86 REMARK 500 27 ASP A 61 73.52 60.00 REMARK 500 27 GLU A 66 35.35 -86.13 REMARK 500 27 ARG A 83 -161.47 164.32 REMARK 500 27 LEU A 90 46.66 -106.59 REMARK 500 27 ASN A 97 16.59 57.99 REMARK 500 28 SER A 6 36.51 -141.64 REMARK 500 28 ARG A 17 -33.82 -133.79 REMARK 500 28 ASN A 43 51.21 -158.23 REMARK 500 28 ASP A 61 83.35 52.05 REMARK 500 28 ARG A 83 -143.75 174.55 REMARK 500 29 ASN A 43 40.82 -156.29 REMARK 500 29 ASP A 61 77.40 54.62 REMARK 500 29 GLU A 65 -63.93 -101.42 REMARK 500 29 GLU A 66 40.34 -79.81 REMARK 500 29 ARG A 83 -148.18 171.49 REMARK 500 30 ASN A 43 51.08 -161.91 REMARK 500 30 ASP A 61 79.89 58.78 REMARK 500 30 ARG A 83 -153.95 167.49 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JZJ RELATED DB: PDB REMARK 900 RELATED ID: 2JZL RELATED DB: PDB
DBREF 2JZK A 1 103 UNP Q5MK11 Q5MK11_TUBBO 1 103
SEQADV 2JZK GLY A -2 UNP Q5MK11 EXPRESSION TAG SEQADV 2JZK SER A -1 UNP Q5MK11 EXPRESSION TAG SEQADV 2JZK HIS A 0 UNP Q5MK11 EXPRESSION TAG
SEQRES 1 A 106 GLY SER HIS MET SER TYR ALA ASP SER SER ARG ASN ALA SEQRES 2 A 106 VAL LEU THR ASN GLY GLY ARG THR LEU ARG ALA GLU CYS SEQRES 3 A 106 ARG ASN ALA ASP GLY ASN TRP VAL THR SER GLU LEU ASP SEQRES 4 A 106 LEU ASP THR CYS ILE GLY ASN PRO ASN GLY PHE LEU GLY SEQRES 5 A 106 TRP GLY MET GLN ASN PHE SER HIS SER SER GLU ASP ILE SEQRES 6 A 106 LYS LEU GLU GLU GLY GLY ARG LYS LEU THR CYS ARG PRO SEQRES 7 A 106 LYS THR VAL ASP GLY GLY PHE ARG GLU ARG GLN GLY ILE SEQRES 8 A 106 ASP LEU ASN ARG ILE GLN ASN VAL ASN GLY ARG LEU VAL SEQRES 9 A 106 PHE GLN
HELIX 1 1 SER A 2 ASP A 5 5 4 HELIX 2 2 ASN A 54 HIS A 57 5 4
SHEET 1 A 3 SER A 7 THR A 13 0 SHEET 2 A 3 THR A 18 ARG A 24 -1 O GLU A 22 N ARG A 8 SHEET 3 A 3 TRP A 30 ASP A 36 -1 O VAL A 31 N CYS A 23 SHEET 1 B 2 ILE A 41 GLY A 42 0 SHEET 2 B 2 GLY A 49 TRP A 50 -1 O GLY A 49 N GLY A 42 SHEET 1 C 3 SER A 59 LEU A 64 0 SHEET 2 C 3 LYS A 70 PRO A 75 -1 O THR A 72 N LYS A 63 SHEET 3 C 3 GLN A 86 ASP A 89 -1 O ILE A 88 N LEU A 71 SHEET 1 D 2 ILE A 93 VAL A 96 0 SHEET 2 D 2 ARG A 99 PHE A 102 -1 O ARG A 99 N VAL A 96
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000