10 20 30 40 50 60 70 80 2JYN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-DEC-07 2JYN
TITLE A NOVEL SOLUTION NMR STRUCTURE OF PROTEIN YST0336 FROM TITLE 2 SACCHAROMYCES CEREVISIAE. NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET YT51/ONTARIO CENTRE FOR STRUCTURAL TITLE 4 PROTEOMICS TARGET YST0336
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0368 PROTEIN YPL225W; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: YPL225W; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS NOVEL FOLD, YST0336, YT51, ONTARIO CENTRE FOR STRUCTURAL KEYWDS 2 PROTEOMICS, OCSP, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, CYTOPLASM, KEYWDS 4 STRUCTURAL GENOMICS, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR B.WU,A.YEE,C.FARES,A.LEMAK,A.GUTMANAS,A.SEMEST, AUTHOR 2 C.H.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (NESG),ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS (OCSP)
REVDAT 3 24-FEB-09 2JYN 1 VERSN REVDAT 2 05-AUG-08 2JYN 1 AUTHOR KEYWDS REVDAT 1 25-DEC-07 2JYN 0
JRNL AUTH B.WU,A.YEE,C.FARES,A.LEMAK,A.GUTMANAS,A.SEMEST, JRNL AUTH 2 C.H.ARROWSMITH JRNL TITL A NOVEL SOLUTION NMR STRUCTURE OF PROTEIN YST0336 JRNL TITL 2 FROM SACCHAROMYCES CEREVISIAE. JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JYN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB100454.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN YST0336, 10 MM [U REMARK 210 -100% 2H] TRIS, 300 MM SODIUM REMARK 210 CHLORIDE, 0.01 % SODIUM AZIDE, REMARK 210 10 MM BENZAMIDINE, 90% H2O/10% REMARK 210 D2O; 0.5 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN YST0336, 10 REMARK 210 MM [U-100% 2H] TRIS, 300 MM REMARK 210 SODIUM CHLORIDE, 0.01 % SODIUM REMARK 210 AZIDE, 10 MM BENZAMIDINE, REMARK 210 99.9% D2O; 0.5 MM [U-100% 13C; REMARK 210 U-100% 15N] PROTEIN YST0336, REMARK 210 10 MM [U-100% 2H] TRIS, 300 MM REMARK 210 SODIUM CHLORIDE, 0.01 % SODIUM REMARK 210 AZIDE, 10 MM BENZAMIDINE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO, 3D CBCA(CO)NH, 3D REMARK 210 HNCACB, 3D HN(CO)CA, 3D C(CO) REMARK 210 NH, 3D H(CCO)NH, 3D HCCH- REMARK 210 TOCSY, 3D CCH-TOCSY, 3D REMARK 210 HBHA(CO)NH, 3D 1H-15N NOESY, REMARK 210 3D 1H-13C NOESY, 3D 1H-13C REMARK 210 NOESY AROMATIC, 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, SPARKY 3.95, REMARK 210 AUTOASSIGN, CYANA 2.1, REMARK 210 AUTOSTRUCTURE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 6 177.22 66.96 REMARK 500 1 LYS A 95 -46.38 -142.67 REMARK 500 1 ASN A 100 66.05 -111.99 REMARK 500 2 ALA A 9 95.13 -66.01 REMARK 500 2 LYS A 95 -59.62 -134.77 REMARK 500 2 PHE A 101 -51.48 -127.75 REMARK 500 2 SER A 110 39.92 -91.31 REMARK 500 2 GLN A 145 -74.56 -67.16 REMARK 500 3 ASN A 11 147.30 -173.21 REMARK 500 3 ASP A 98 36.55 -83.61 REMARK 500 4 ASP A 10 -93.65 64.37 REMARK 500 4 ASN A 11 -154.28 48.00 REMARK 500 4 PRO A 38 36.23 -81.65 REMARK 500 4 ASP A 98 36.71 -86.21 REMARK 500 5 ALA A 6 109.12 67.22 REMARK 500 5 ASP A 10 -76.15 -101.83 REMARK 500 5 LYS A 95 -66.51 -135.44 REMARK 500 5 ASP A 98 20.77 -77.82 REMARK 500 5 GLU A 112 -158.11 -81.56 REMARK 500 6 ALA A 9 160.75 82.12 REMARK 500 6 ASP A 10 94.16 -65.76 REMARK 500 6 ASN A 11 136.93 67.21 REMARK 500 6 LYS A 95 -63.53 -121.26 REMARK 500 6 ASP A 98 20.03 -79.66 REMARK 500 7 ASN A 5 169.67 65.72 REMARK 500 7 ALA A 9 -175.12 66.04 REMARK 500 7 GLU A 13 -74.74 -52.33 REMARK 500 7 LYS A 95 -64.75 -121.68 REMARK 500 7 ASP A 98 38.32 -88.62 REMARK 500 8 SER A 2 102.62 66.72 REMARK 500 8 ASN A 5 98.04 -61.98 REMARK 500 8 ALA A 9 87.45 58.28 REMARK 500 8 GLU A 112 -169.93 -79.16 REMARK 500 9 ALA A 6 -91.12 54.79 REMARK 500 9 GLU A 7 142.68 177.44 REMARK 500 9 SER A 36 -77.86 -96.98 REMARK 500 9 THR A 45 -157.89 -138.23 REMARK 500 9 LYS A 95 -57.63 -132.70 REMARK 500 9 GLU A 112 -82.50 -93.83 REMARK 500 9 TYR A 113 13.00 -158.99 REMARK 500 10 THR A 3 -90.22 -122.50 REMARK 500 10 PHE A 4 -90.21 -178.22 REMARK 500 10 ASP A 10 -163.13 -78.01 REMARK 500 10 ASN A 11 124.80 72.32 REMARK 500 10 PRO A 38 21.34 -77.32 REMARK 500 10 THR A 45 -155.62 -135.15 REMARK 500 10 PHE A 101 -67.10 -142.62 REMARK 500 11 SER A 2 -142.95 -143.49 REMARK 500 11 THR A 8 76.09 -153.09 REMARK 500 11 ASN A 11 125.04 70.11 REMARK 500 11 LYS A 95 -66.63 -142.83 REMARK 500 11 ASN A 100 74.59 -113.89 REMARK 500 12 SER A 2 -155.93 57.19 REMARK 500 12 ASN A 11 112.95 68.36 REMARK 500 12 LYS A 95 -66.09 -130.88 REMARK 500 12 GLU A 112 -169.93 -116.40 REMARK 500 13 SER A 2 90.99 -61.65 REMARK 500 13 THR A 3 24.53 -150.80 REMARK 500 13 ASP A 10 86.78 -68.61 REMARK 500 13 LYS A 95 -65.20 -107.15 REMARK 500 13 ASP A 98 36.65 -89.27 REMARK 500 14 GLU A 7 75.73 -152.08 REMARK 500 14 ASP A 10 -65.93 -101.03 REMARK 500 14 THR A 45 -147.95 -125.53 REMARK 500 14 LYS A 95 -41.32 -137.99 REMARK 500 14 ASP A 98 34.56 -89.90 REMARK 500 14 GLU A 112 -111.34 -114.98 REMARK 500 14 TYR A 113 64.27 -150.99 REMARK 500 15 THR A 3 125.99 68.91 REMARK 500 15 PHE A 4 95.80 -64.78 REMARK 500 15 ALA A 9 27.66 -161.22 REMARK 500 15 ASP A 10 -160.71 -79.28 REMARK 500 15 GLU A 112 -161.56 -111.66 REMARK 500 16 PRO A 38 33.35 -75.76 REMARK 500 16 LEU A 44 -64.28 -97.67 REMARK 500 16 PHE A 59 77.75 -119.18 REMARK 500 16 LYS A 95 -63.45 -130.17 REMARK 500 17 ASP A 10 -93.39 -142.64 REMARK 500 17 GLU A 112 -169.76 -108.71 REMARK 500 18 SER A 2 50.52 -90.33 REMARK 500 18 ALA A 9 -175.63 -177.05 REMARK 500 18 ASN A 11 -155.59 53.12 REMARK 500 18 GLU A 112 -162.88 -107.39 REMARK 500 19 SER A 2 146.05 70.67 REMARK 500 19 ALA A 9 -102.30 -130.28 REMARK 500 19 ASN A 11 140.78 74.79 REMARK 500 19 LYS A 95 -66.50 -122.62 REMARK 500 20 ASN A 5 115.97 -168.35 REMARK 500 20 ASP A 10 -77.52 -75.12 REMARK 500 20 SER A 110 30.29 -91.56 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YT51 RELATED DB: TARGETDB
DBREF 2JYN A 1 146 UNP Q08971 YP225_YEAST 1 146
SEQRES 1 A 146 MET SER THR PHE ASN ALA GLU THR ALA ASP ASN LEU GLU SEQRES 2 A 146 ASP ILE GLU LYS GLN PHE ALA VAL VAL ALA VAL GLU GLN SEQRES 3 A 146 ALA GLU THR TYR TRP LYS LEU LEU THR SER VAL PRO GLY SEQRES 4 A 146 SER LYS LEU ARG LEU THR LYS PHE ASP ASP GLU ILE TYR SEQRES 5 A 146 GLU ASN PHE MET GLU ARG PHE PRO GLU TYR LYS ASP VAL SEQRES 6 A 146 GLU ARG VAL LYS LYS PHE THR GLU GLU GLU LEU LYS THR SEQRES 7 A 146 LYS GLU ALA LYS GLU ARG TRP ARG LYS PHE PHE THR ILE SEQRES 8 A 146 PHE GLU LYS LYS ILE GLU ASP TYR ASN PHE GLY THR LEU SEQRES 9 A 146 LEU ARG THR ASP ALA SER ALA GLU TYR GLY GLN PHE THR SEQRES 10 A 146 THR CYS PHE VAL VAL ARG LEU GLN PHE TYR ALA PHE GLU SEQRES 11 A 146 ILE ALA ARG ASN LYS HIS GLY LEU ASN ASP TRP ILE VAL SEQRES 12 A 146 GLY GLN LYS
HELIX 1 1 ASN A 11 VAL A 37 1 27 HELIX 2 2 PHE A 47 PHE A 59 1 13 HELIX 3 3 ASP A 64 LYS A 70 1 7 HELIX 4 4 THR A 78 GLU A 93 1 16 HELIX 5 5 VAL A 122 HIS A 136 1 15 HELIX 6 6 ASN A 139 VAL A 143 5 5
SHEET 1 A 2 THR A 103 ARG A 106 0 SHEET 2 A 2 THR A 118 VAL A 121 -1 O CYS A 119 N LEU A 105
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000