2JYK - Header Asymmetric Unit

HEADER DNA 14-DEC-07 2JYK

TITLE NMR STRUCTURE OF A 21 BP DNA DUPLEX PREFERENTIALLY CLEAVED TITLE 2 BY HUMAN TOPOISOMERASE II

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*DAP*DCP*DAP*DGP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DTP*DCP*DGP* COMPND 4 DAP*DTP*DCP*DAP*DCP*DGP*DT)-3'); COMPND 5 CHAIN: A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*DAP*DCP*DGP*DTP*DGP*DAP*DTP*DCP*DGP*DAP*DTP*DGP*DAP*DTP* COMPND 10 DAP*DAP*DGP*DCP*DTP*DGP*DT)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES

KEYWDS B-DNA, DOUBLE HELIX, TOPOISOMERASE II

EXPDTA SOLUTION NMR

NUMMDL 10

AUTHOR G.MASLIAH,O.MAUFFRET

REVDAT 3 24-FEB-09 2JYK 1 VERSN REVDAT 2 12-AUG-08 2JYK 1 JRNL REVDAT 1 15-JUL-08 2JYK 0

JRNL AUTH G.MASLIAH,B.RENE,L.ZARGARIAN,S.FERMANDJIAN, JRNL AUTH 2 O.MAUFFRET JRNL TITL IDENTIFICATION OF INTRINSIC DYNAMICS IN A DNA JRNL TITL 2 SEQUENCE PREFERENTIALLY CLEAVED BY TOPOISOMERASE JRNL TITL 3 II ENZYME JRNL REF J.MOL.BIOL. V. 381 692 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18585388 JRNL DOI 10.1016/J.JMB.2008.06.024

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.16 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON A TOTAL OF REMARK 3 670 NOE, 102 HYDROGEN BOND, AND 286 DIHEDRAL RESTRAINTS

REMARK 4 REMARK 4 2JYK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB100451.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.00 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 46MM SODIUM PHOSPHATE; 1MM REMARK 210 EDTA; 1.5MM STRAND1; 1.5MM REMARK 210 STRAND2; 90% H2O/10% D2O; 46MM REMARK 210 SODIUM PHOSPHATE; 1MM EDTA; REMARK 210 1.5MM STRAND1; 1.5MM STRAND2; REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY, 2D DQF-COSY, REMARK 210 2D 1H-1H TOCSY, 2D 1H-13C REMARK 210 HSQC, 2D 1H-31P HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MORASS 2.51 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

DBREF 2JYK A 1 21 PDB 2JYK 2JYK 1 21 DBREF 2JYK B 22 42 PDB 2JYK 2JYK 1 21

SEQRES 1 A 21 DA DC DA DG DC DT DT DA DT DC DA DT DC SEQRES 2 A 21 DG DA DT DC DA DC DG DT SEQRES 1 B 21 DA DC DG DT DG DA DT DC DG DA DT DG DA SEQRES 2 B 21 DT DA DA DG DC DT DG DT

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000