10 20 30 40 50 60 70 80 2JYI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 13-DEC-07 2JYI
TITLE SOLUTION STRUCTURE OF MLL CXXC DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN HRX; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CXXC DOMAIN; COMPND 5 SYNONYM: ALL-1, TRITHORAX-LIKE PROTEIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MLL, ALL1, HRX, HTRX, TRX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX 4-T2
KEYWDS PROTEIN, CXXC DOMAIN, MLL, ALTERNATIVE SPLICING, KEYWDS 2 BROMODOMAIN, CHROMOSOMAL REARRANGEMENT, DNA-BINDING, METAL- KEYWDS 3 BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, PROTO- KEYWDS 4 ONCOGENE, TRANSCRIPTION, TRANSCRIPTION REGULATION, UBL KEYWDS 5 CONJUGATION, ZINC, ZINC-FINGER
EXPDTA SOLUTION NMR
NUMMDL 14
AUTHOR T.CIERPICKI,J.H.BUSHWELLER
REVDAT 1 09-DEC-08 2JYI 0
JRNL AUTH T.CIERPICKI,L.E.RIESBECK,J.GREMBECKA,S.M.LUKASIK, JRNL AUTH 2 M.OMONKOWSKA,D.SHULTIS,N.J.ZELEZNIK-LE, JRNL AUTH 3 J.H.BUSHWELLER JRNL TITL STRUCTURAL BASIS FOR MAINTENANCE OF UNMETHYLATED JRNL TITL 2 CPG ELEMENTS BY THE CXXC DOMAIN OF MLL AND ITS JRNL TITL 3 CRITICAL CONTRIBUTIONS TO MLL-AF9 IMMORTALIZATION JRNL TITL 4 ACTIVITY JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HIGH TEMP ANNEALING WITHOUT RRDCS, REMARK 3 LOW TEMP ANNEALING WITH RDCS
REMARK 4 REMARK 4 2JYI COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB100449.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 7.1; 7.1; 7.1 REMARK 210 IONIC STRENGTH : 0.3; 0.3; 0.3 REMARK 210 PRESSURE : AMBIENT ATM; AMBIENT ATM; REMARK 210 AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-98% 13C; U-98% 15N] REMARK 210 CXXC, 95% H2O/5% D2O; 1 MM [U- REMARK 210 98% 13C; U-98% 15N] CXXC, 95% REMARK 210 H2O/5% D2O; 1 MM [U-98% 13C; U REMARK 210 -98% 15N] CXXC, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY, IPAP, HNCO NCO, HNCO REMARK 210 COCA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.110, NMRPIPE 2.5, REMARK 210 CNS 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, DISTANCE REMARK 210 GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 14 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A1150 89.39 60.84 REMARK 500 1 SER A1152 102.50 60.82 REMARK 500 1 ARG A1182 10.09 -154.70 REMARK 500 1 LYS A1185 22.11 -143.99 REMARK 500 1 LYS A1186 -146.34 46.27 REMARK 500 1 GLN A1187 125.60 65.21 REMARK 500 1 SER A1202 171.45 60.05 REMARK 500 2 ASN A1183 91.60 33.46 REMARK 500 2 GLN A1187 161.97 62.09 REMARK 500 2 CYS A1188 -70.56 -124.94 REMARK 500 2 GLN A1198 57.13 -111.20 REMARK 500 2 MET A1200 -59.64 -122.20 REMARK 500 2 SER A1202 132.64 64.12 REMARK 500 3 ARG A1151 44.11 -99.42 REMARK 500 3 LYS A1185 -40.90 -141.89 REMARK 500 3 LYS A1186 96.04 70.73 REMARK 500 3 GLN A1198 55.97 -107.87 REMARK 500 3 TRP A1199 -67.93 -155.69 REMARK 500 4 LYS A1185 -140.85 -100.50 REMARK 500 4 GLN A1187 156.88 61.97 REMARK 500 4 SER A1202 -172.01 58.35 REMARK 500 5 ARG A1151 -66.08 68.99 REMARK 500 5 SER A1152 83.08 64.83 REMARK 500 5 ARG A1182 10.23 -154.54 REMARK 500 5 CYS A1188 36.09 -177.10 REMARK 500 5 CYS A1189 112.77 56.72 REMARK 500 5 SER A1202 132.86 -178.37 REMARK 500 6 ARG A1151 89.18 59.45 REMARK 500 6 ASN A1183 88.65 36.55 REMARK 500 6 LYS A1185 -39.34 -146.48 REMARK 500 6 LYS A1186 94.85 73.84 REMARK 500 6 SER A1202 94.35 53.68 REMARK 500 7 ARG A1150 23.62 -150.69 REMARK 500 7 ARG A1151 92.62 53.66 REMARK 500 7 SER A1152 -67.32 -141.29 REMARK 500 7 ARG A1153 102.24 59.89 REMARK 500 7 ARG A1182 11.24 -154.67 REMARK 500 7 ILE A1184 -73.00 -79.72 REMARK 500 7 LYS A1186 137.79 62.34 REMARK 500 7 CYS A1188 130.70 76.71 REMARK 500 7 GLN A1198 142.00 60.05 REMARK 500 8 LYS A1148 105.35 60.71 REMARK 500 8 ARG A1151 93.48 60.75 REMARK 500 8 SER A1152 125.53 63.43 REMARK 500 8 ARG A1182 10.49 -156.24 REMARK 500 8 LYS A1185 -100.35 -141.27 REMARK 500 8 GLN A1187 179.53 60.30 REMARK 500 8 CYS A1188 -50.77 -140.05 REMARK 500 8 TRP A1199 85.20 -152.98 REMARK 500 8 MET A1200 107.48 58.87 REMARK 500 8 PRO A1201 87.31 -67.62 REMARK 500 9 ARG A1150 163.41 61.50 REMARK 500 9 ARG A1151 48.10 -161.19 REMARK 500 9 SER A1152 -32.63 -169.75 REMARK 500 9 ARG A1153 102.26 66.79 REMARK 500 9 CYS A1188 -68.51 -140.00 REMARK 500 9 CYS A1189 114.75 -172.90 REMARK 500 9 GLN A1198 141.04 60.19 REMARK 500 9 PRO A1201 104.00 -51.85 REMARK 500 10 ARG A1151 -78.98 63.88 REMARK 500 10 ASN A1183 94.80 30.92 REMARK 500 10 ILE A1184 -72.66 -94.45 REMARK 500 10 LYS A1186 -79.98 61.89 REMARK 500 10 GLN A1187 169.34 62.35 REMARK 500 10 GLN A1198 53.25 -104.89 REMARK 500 10 PRO A1201 -164.29 -56.94 REMARK 500 10 SER A1202 41.22 -164.69 REMARK 500 11 ARG A1150 68.12 -114.57 REMARK 500 11 SER A1152 116.02 61.61 REMARK 500 11 ARG A1153 -61.78 -92.71 REMARK 500 11 ARG A1154 155.62 105.16 REMARK 500 11 ASN A1183 86.64 36.35 REMARK 500 11 LYS A1185 -156.05 -144.72 REMARK 500 11 LYS A1186 85.33 -155.64 REMARK 500 11 SER A1202 31.09 -164.39 REMARK 500 12 ARG A1151 -72.80 -101.55 REMARK 500 12 SER A1152 -7.27 80.69 REMARK 500 12 ARG A1153 104.54 56.83 REMARK 500 12 ASN A1183 71.11 37.38 REMARK 500 12 ILE A1184 -64.37 -93.16 REMARK 500 12 LYS A1186 114.29 58.43 REMARK 500 12 CYS A1189 118.16 61.67 REMARK 500 12 SER A1202 151.48 61.95 REMARK 500 13 ARG A1153 92.43 60.93 REMARK 500 13 ARG A1182 9.81 -155.06 REMARK 500 13 LYS A1185 -109.28 -142.66 REMARK 500 13 GLN A1187 157.37 63.39 REMARK 500 13 CYS A1189 111.17 57.81 REMARK 500 13 GLN A1198 55.65 -108.88 REMARK 500 14 ARG A1151 169.73 64.00 REMARK 500 14 ARG A1153 -80.89 61.98 REMARK 500 14 ARG A1154 153.62 108.14 REMARK 500 14 LYS A1185 -66.04 -143.57 REMARK 500 14 CYS A1188 -165.22 178.50 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A2001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1155 SG REMARK 620 2 CYS A1158 SG 100.4 REMARK 620 3 CYS A1161 SG 111.4 113.4 REMARK 620 4 CYS A1194 SG 103.5 120.7 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A2002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1167 SG REMARK 620 2 CYS A1170 SG 99.4 REMARK 620 3 CYS A1173 SG 122.0 96.9 REMARK 620 4 CYS A1189 SG 118.6 106.3 109.1 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A2001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A2002
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J2S RELATED DB: PDB REMARK 900 INDEPENDENTLY DETERMINED STRUCTURE OF CXXC DOMAIN
DBREF 2JYI A 1147 1203 UNP Q03164 HRX_HUMAN 1147 1203
SEQRES 1 A 57 LYS LYS GLY ARG ARG SER ARG ARG CYS GLY GLN CYS PRO SEQRES 2 A 57 GLY CYS GLN VAL PRO GLU ASP CYS GLY VAL CYS THR ASN SEQRES 3 A 57 CYS LEU ASP LYS PRO LYS PHE GLY GLY ARG ASN ILE LYS SEQRES 4 A 57 LYS GLN CYS CYS LYS MET ARG LYS CYS GLN ASN LEU GLN SEQRES 5 A 57 TRP MET PRO SER LYS
HET ZN A2001 1 HET ZN A2002 1
HETNAM ZN ZINC ION
FORMUL 2 ZN 2(ZN 2+)
HELIX 1 1 CYS A 1158 VAL A 1163 1 6 HELIX 2 2 CYS A 1170 ASP A 1175 1 6 HELIX 3 3 LYS A 1176 GLY A 1180 5 5 HELIX 4 4 CYS A 1189 LYS A 1193 5 5
LINK SG CYS A1155 ZN ZN A2001 1555 1555 2.25 LINK SG CYS A1158 ZN ZN A2001 1555 1555 2.29 LINK SG CYS A1161 ZN ZN A2001 1555 1555 2.29 LINK SG CYS A1167 ZN ZN A2002 1555 1555 2.26 LINK SG CYS A1170 ZN ZN A2002 1555 1555 2.31 LINK SG CYS A1173 ZN ZN A2002 1555 1555 2.35 LINK SG CYS A1189 ZN ZN A2002 1555 1555 2.32 LINK SG CYS A1194 ZN ZN A2001 1555 1555 2.34
SITE 1 AC1 5 ARG A1153 CYS A1155 GLN A1157 CYS A1158 SITE 2 AC1 5 GLY A1160 SITE 1 AC2 6 ASP A1166 CYS A1167 GLY A1168 VAL A1169 SITE 2 AC2 6 CYS A1170 CYS A1173
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000