10 20 30 40 50 60 70 80 2JYG - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 13-DEC-07 2JYG
TITLE SOLUTION STRUCTURE OF THE W184A/M185A MUTANT OF THE CARBOXY- TITLE 2 TERMINAL DIMERIZATION DOMAIN OF THE HIV-1 CAPSID PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24 (CA); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 280-363; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG-POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PET15B; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLASMID
KEYWDS HIV-1, CARBOXY-TERMINAL, DIMERIZATION DOMAIN, CTD, NMR, 3D- KEYWDS 2 NMR, CAPSID PROTEIN (CA), DOUBLE MUTANT, MONOMER STRUCTURE, KEYWDS 3 AIDS, ASPARTYL PROTEASE, CAPSID MATURATION, CORE PROTEIN, KEYWDS 4 CYTOPLASM, DNA INTEGRATION, DNA RECOMBINATION, DNA-DIRECTED KEYWDS 5 DNA POLYMERASE, ENDONUCLEASE, HYDROLASE, LIPOPROTEIN, KEYWDS 6 MAGNESIUM, MEMBRANE, METAL-BINDING, MULTIFUNCTIONAL ENZYME, KEYWDS 7 MYRISTATE, NUCLEASE, NUCLEOTIDYLTRANSFERASE, NUCLEUS, KEYWDS 8 PHOSPHOPROTEIN, PROTEASE, RNA-BINDING, RNA-DIRECTED DNA KEYWDS 9 POLYMERASE, TRANSFERASE, VIRAL NUCLEOPROTEIN, VIRION, ZINC, KEYWDS 10 ZINC-FINGER, VIRAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 30
AUTHOR H.C.WONG,R.SHIN,N.R.KRISHNA
REVDAT 4 24-FEB-09 2JYG 1 VERSN REVDAT 3 18-MAR-08 2JYG 1 JRNL REVDAT 2 11-MAR-08 2JYG 1 JRNL REVDAT 1 26-FEB-08 2JYG 0
JRNL AUTH H.C.WONG,R.SHIN,N.R.KRISHNA JRNL TITL SOLUTION STRUCTURE OF A DOUBLE MUTANT OF THE JRNL TITL 2 CARBOXY-TERMINAL DIMERIZATION DOMAIN OF THE HIV-1 JRNL TITL 3 CAPSID PROTEIN. JRNL REF BIOCHEMISTRY V. 47 2289 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18220423 JRNL DOI 10.1021/BI7022128
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CYANA
REMARK 4 REMARK 4 2JYG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB100447.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 1 MM [U-98% 15N] REMARK 210 PROTEIN, 1 MM [U-95% 13C] REMARK 210 PROTEIN, 90% V/V H2O, 10% MM REMARK 210 [U-100% 2H] D2O, 50 MM SODIUM REMARK 210 PHOSPHATE, 90%H2O/10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 3D HNCA, 3D REMARK 210 HNCACB, 3D CBCA(CO)NH, 3D REMARK 210 HNCO, 3D HCCH-TOCSY, 3D HNHA, REMARK 210 15N-HSQC-NOESY, 13C-HSQC- REMARK 210 NOESY, HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURAL CONSTRAINTS INCLUDED NOE, HYDROGEN BONDS, REMARK 210 AND TORSION ANGLE CONSTRAINTS
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 175 35.45 -160.63 REMARK 500 1 GLN A 176 97.34 -38.00 REMARK 500 1 ALA A 177 157.14 179.99 REMARK 500 1 GLU A 180 66.82 -164.91 REMARK 500 1 ASN A 195 174.03 -47.44 REMARK 500 1 LEU A 205 -85.99 -53.94 REMARK 500 1 HIS A 226 -72.86 -164.22 REMARK 500 1 ALA A 228 112.21 179.54 REMARK 500 1 ARG A 229 169.03 179.61 REMARK 500 2 GLU A 175 44.40 -151.27 REMARK 500 2 GLN A 176 156.42 -37.56 REMARK 500 2 ALA A 177 158.46 -40.08 REMARK 500 2 ASN A 195 174.11 -50.75 REMARK 500 2 LEU A 205 -85.53 -63.97 REMARK 500 2 HIS A 226 124.75 -173.68 REMARK 500 2 ALA A 228 133.17 179.62 REMARK 500 2 ARG A 229 161.95 179.62 REMARK 500 3 SER A 149 72.22 -101.53 REMARK 500 3 PRO A 157 -74.74 -75.03 REMARK 500 3 GLU A 175 53.68 174.33 REMARK 500 3 GLN A 176 98.20 -37.85 REMARK 500 3 ASN A 195 175.83 -48.22 REMARK 500 3 LEU A 205 -87.76 -46.76 REMARK 500 3 ALA A 228 159.63 -40.60 REMARK 500 3 ARG A 229 169.88 -45.08 REMARK 500 4 GLU A 175 42.39 -177.21 REMARK 500 4 GLN A 176 101.82 -37.12 REMARK 500 4 ALA A 177 145.94 179.99 REMARK 500 4 GLU A 180 72.05 -177.87 REMARK 500 4 ASN A 195 174.60 -52.70 REMARK 500 4 LEU A 205 -84.50 -65.60 REMARK 500 4 ALA A 228 77.36 179.61 REMARK 500 4 ARG A 229 109.33 -39.17 REMARK 500 5 GLU A 175 48.70 -177.49 REMARK 500 5 GLN A 176 114.25 -37.50 REMARK 500 5 ALA A 177 142.19 -176.48 REMARK 500 5 ALA A 184 110.65 73.37 REMARK 500 5 ASN A 195 175.56 -48.41 REMARK 500 5 LEU A 205 -82.20 -58.24 REMARK 500 5 LYS A 227 -62.28 -141.24 REMARK 500 5 ARG A 229 148.40 -39.70 REMARK 500 6 GLU A 175 54.29 170.40 REMARK 500 6 GLN A 176 128.93 -38.61 REMARK 500 6 ALA A 177 139.74 179.92 REMARK 500 6 ALA A 184 106.03 71.81 REMARK 500 6 ASN A 195 176.93 -54.13 REMARK 500 6 LEU A 205 -83.41 -66.68 REMARK 500 6 ALA A 228 136.98 179.74 REMARK 500 6 ARG A 229 153.25 179.65 REMARK 500 7 PRO A 157 -71.46 -74.99 REMARK 500 7 GLU A 175 60.53 176.42 REMARK 500 7 GLN A 176 89.64 179.55 REMARK 500 7 ALA A 177 79.67 -179.87 REMARK 500 7 ALA A 185 101.57 -50.43 REMARK 500 7 ASN A 195 171.41 -46.34 REMARK 500 7 LEU A 205 -87.28 -58.73 REMARK 500 7 LYS A 227 111.62 -169.38 REMARK 500 7 ARG A 229 148.80 179.71 REMARK 500 8 GLU A 175 39.50 -172.82 REMARK 500 8 GLN A 176 96.55 -38.07 REMARK 500 8 ALA A 177 124.60 -179.95 REMARK 500 8 SER A 178 143.58 177.02 REMARK 500 8 ASN A 195 169.73 -45.72 REMARK 500 8 LEU A 205 -72.46 -56.82 REMARK 500 8 ALA A 228 96.58 179.74 REMARK 500 8 ARG A 229 96.43 179.72 REMARK 500 9 GLU A 175 54.87 174.45 REMARK 500 9 GLN A 176 97.41 -38.00 REMARK 500 9 THR A 186 -71.41 -59.29 REMARK 500 9 ASN A 195 172.74 -47.18 REMARK 500 9 LEU A 205 -73.12 -66.89 REMARK 500 9 LYS A 227 153.62 -43.42 REMARK 500 9 ALA A 228 130.07 179.60 REMARK 500 9 ARG A 229 150.92 -40.19 REMARK 500 10 GLU A 175 58.89 179.96 REMARK 500 10 GLN A 176 112.01 179.45 REMARK 500 10 ALA A 177 112.48 -178.45 REMARK 500 10 SER A 178 171.45 169.61 REMARK 500 10 ASN A 195 168.59 -45.02 REMARK 500 10 LEU A 205 -86.90 -52.36 REMARK 500 10 ALA A 228 112.42 179.58 REMARK 500 11 GLU A 175 37.28 -170.65 REMARK 500 11 GLN A 176 97.18 -38.50 REMARK 500 11 ALA A 177 160.55 179.79 REMARK 500 11 GLU A 180 66.16 -164.50 REMARK 500 11 ASN A 195 164.76 -42.18 REMARK 500 11 LEU A 205 -72.55 -84.94 REMARK 500 11 VAL A 221 150.16 -48.10 REMARK 500 11 ALA A 228 164.99 179.66 REMARK 500 11 ARG A 229 163.87 179.67 REMARK 500 12 SER A 149 79.49 -101.37 REMARK 500 12 GLU A 175 46.62 -154.37 REMARK 500 12 GLN A 176 150.84 -34.92 REMARK 500 12 ALA A 177 161.43 -41.63 REMARK 500 12 ASN A 195 175.51 -49.35 REMARK 500 12 LEU A 205 -85.56 -54.84 REMARK 500 12 ARG A 229 114.69 179.71 REMARK 500 13 GLU A 175 37.05 -164.64 REMARK 500 13 GLN A 176 97.58 -38.21 REMARK 500 13 ALA A 177 158.68 179.79 REMARK 500 13 GLU A 180 67.45 -166.43 REMARK 500 13 ASN A 195 162.17 -41.38 REMARK 500 13 LEU A 205 -85.27 -66.71 REMARK 500 13 HIS A 226 -61.30 -149.03 REMARK 500 14 PRO A 157 -71.02 -75.03 REMARK 500 14 GLU A 175 46.81 -178.64 REMARK 500 14 GLN A 176 151.99 179.28 REMARK 500 14 ALA A 177 70.41 -176.09 REMARK 500 14 GLU A 180 54.69 -164.54 REMARK 500 14 ALA A 184 109.06 -171.10 REMARK 500 14 ASN A 195 175.48 -48.16 REMARK 500 14 LEU A 205 -84.83 -53.26 REMARK 500 14 VAL A 221 152.20 -48.01 REMARK 500 14 ARG A 229 117.38 179.64 REMARK 500 15 GLU A 175 54.85 176.57 REMARK 500 15 GLN A 176 131.05 179.27 REMARK 500 15 ALA A 177 87.76 -178.65 REMARK 500 15 GLU A 180 62.31 -155.40 REMARK 500 15 VAL A 181 -45.44 -134.65 REMARK 500 15 ASN A 195 172.71 -55.27 REMARK 500 15 LEU A 211 -37.82 -39.59 REMARK 500 15 ALA A 228 149.68 179.33 REMARK 500 15 ARG A 229 148.23 179.64 REMARK 500 16 PRO A 157 -89.74 -74.95 REMARK 500 16 GLU A 175 60.98 164.68 REMARK 500 16 GLN A 176 86.33 -56.61 REMARK 500 16 GLU A 180 46.32 -149.39 REMARK 500 16 THR A 186 -80.15 -62.76 REMARK 500 16 ASN A 195 165.30 -42.51 REMARK 500 16 LEU A 205 -82.08 -57.52 REMARK 500 16 ALA A 228 157.88 179.62 REMARK 500 16 ARG A 229 135.45 179.71 REMARK 500 17 PRO A 157 -75.99 -74.97 REMARK 500 17 GLU A 175 45.48 -173.17 REMARK 500 17 GLN A 176 96.92 -37.61 REMARK 500 17 ALA A 177 149.67 -179.85 REMARK 500 17 GLU A 180 73.22 -179.27 REMARK 500 17 ASN A 195 165.21 -43.18 REMARK 500 17 LEU A 205 -92.27 -61.92 REMARK 500 17 ALA A 228 174.99 179.68 REMARK 500 17 ARG A 229 94.09 179.64 REMARK 500 18 GLU A 175 45.23 -170.03 REMARK 500 18 GLN A 176 96.49 -37.70 REMARK 500 18 ALA A 177 150.11 179.93 REMARK 500 18 GLU A 180 73.57 178.95 REMARK 500 18 VAL A 221 150.60 -41.06 REMARK 500 19 PRO A 157 -80.72 -75.07 REMARK 500 19 GLU A 175 59.02 174.09 REMARK 500 19 GLN A 176 120.26 -37.34 REMARK 500 19 ALA A 184 105.39 72.87 REMARK 500 19 THR A 186 -81.86 -62.58 REMARK 500 19 ASN A 195 160.24 -40.27 REMARK 500 19 VAL A 221 153.53 -47.11 REMARK 500 19 ALA A 228 -59.51 179.61 REMARK 500 19 ARG A 229 155.11 -41.55 REMARK 500 20 GLU A 175 42.35 -147.59 REMARK 500 20 GLN A 176 155.25 -37.11 REMARK 500 20 ALA A 177 154.48 -39.54 REMARK 500 20 VAL A 181 -45.69 -131.75 REMARK 500 20 ALA A 185 109.83 -47.37 REMARK 500 20 ASN A 195 162.43 -41.81 REMARK 500 20 LEU A 205 -83.73 -69.46 REMARK 500 20 ALA A 228 147.59 179.57 REMARK 500 20 ARG A 229 144.89 179.62 REMARK 500 20 VAL A 230 -168.98 44.34 REMARK 500 21 GLU A 175 43.46 -168.23 REMARK 500 21 GLN A 176 96.76 -38.39 REMARK 500 21 ALA A 177 150.33 179.72 REMARK 500 21 GLU A 180 75.05 177.25 REMARK 500 21 LEU A 205 -84.02 -69.05 REMARK 500 21 ALA A 228 152.18 179.65 REMARK 500 22 GLU A 175 53.95 172.37 REMARK 500 22 GLN A 176 97.43 -36.99 REMARK 500 22 GLU A 180 75.42 175.85 REMARK 500 22 ASN A 195 163.44 -42.11 REMARK 500 22 LEU A 205 -86.33 -64.96 REMARK 500 22 HIS A 226 100.21 -165.11 REMARK 500 22 LYS A 227 98.62 -56.22 REMARK 500 22 ARG A 229 153.98 179.70 REMARK 500 23 PRO A 157 -81.16 -75.01 REMARK 500 23 GLU A 175 43.56 -149.89 REMARK 500 23 GLN A 176 155.78 -37.37 REMARK 500 23 ALA A 177 155.95 -38.63 REMARK 500 23 ASN A 195 172.27 -47.04 REMARK 500 23 HIS A 226 95.19 -69.19 REMARK 500 23 ALA A 228 151.57 179.64 REMARK 500 23 ARG A 229 114.65 179.76 REMARK 500 23 VAL A 230 41.45 38.01 REMARK 500 24 GLU A 175 54.56 160.72 REMARK 500 24 GLN A 176 154.67 -37.88 REMARK 500 24 ALA A 184 97.03 70.79 REMARK 500 24 THR A 186 -79.27 -62.36 REMARK 500 24 ASN A 195 176.62 -50.52 REMARK 500 24 LYS A 227 -65.92 -175.39 REMARK 500 24 ALA A 228 173.01 179.65 REMARK 500 24 ARG A 229 130.00 179.64 REMARK 500 25 SER A 149 79.43 -109.74 REMARK 500 25 GLU A 175 39.03 -164.88 REMARK 500 25 GLN A 176 96.30 -38.26 REMARK 500 25 GLU A 180 70.10 -171.04 REMARK 500 25 LEU A 205 -73.54 -74.57 REMARK 500 25 VAL A 221 155.33 -44.09 REMARK 500 25 ALA A 228 -61.36 179.63 REMARK 500 26 SER A 149 65.75 -107.55 REMARK 500 26 GLU A 175 51.25 179.08 REMARK 500 26 GLN A 176 97.18 -38.45 REMARK 500 26 SER A 178 172.18 179.30 REMARK 500 26 GLU A 180 72.26 -176.45 REMARK 500 26 ASN A 195 168.84 -45.21 REMARK 500 26 LEU A 205 -75.96 -59.12 REMARK 500 26 ALA A 228 111.23 179.74 REMARK 500 27 ILE A 153 92.53 -67.94 REMARK 500 27 GLU A 175 53.03 162.79 REMARK 500 27 GLN A 176 106.15 -39.14 REMARK 500 27 GLU A 180 53.35 -140.36 REMARK 500 27 ALA A 184 97.11 -160.51 REMARK 500 27 ASN A 195 175.67 -48.36 REMARK 500 27 LEU A 205 -76.01 -73.52 REMARK 500 27 VAL A 221 158.38 -43.81 REMARK 500 27 ALA A 228 97.31 179.60 REMARK 500 28 GLU A 175 55.88 176.31 REMARK 500 28 GLN A 176 148.79 179.29 REMARK 500 28 ALA A 177 70.83 -178.49 REMARK 500 28 GLU A 180 44.13 -178.37 REMARK 500 28 ASN A 195 171.96 -46.32 REMARK 500 28 LEU A 205 -78.92 -77.54 REMARK 500 28 VAL A 221 154.84 -40.80 REMARK 500 28 ALA A 228 138.55 179.60 REMARK 500 28 ARG A 229 87.22 179.68 REMARK 500 29 GLU A 175 45.00 -170.01 REMARK 500 29 GLN A 176 99.40 -38.04 REMARK 500 29 ALA A 177 146.08 -179.46 REMARK 500 29 GLU A 180 74.28 177.83 REMARK 500 29 ASN A 195 165.01 -42.73 REMARK 500 29 ALA A 228 169.41 179.49 REMARK 500 29 ARG A 229 123.45 179.71 REMARK 500 30 PRO A 157 -78.62 -74.96 REMARK 500 30 GLU A 175 47.31 -161.63 REMARK 500 30 GLN A 176 120.08 179.59 REMARK 500 30 GLU A 180 51.49 170.28 REMARK 500 30 ASN A 195 170.12 -48.25 REMARK 500 30 LEU A 205 -85.34 -61.76 REMARK 500 30 ALA A 228 163.82 179.64 REMARK 500 30 ARG A 229 124.20 179.66 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2JYG A 148 231 UNP P12497 POL_HV1N5 280 363
SEQADV 2JYG ALA A 184 UNP P12497 TRP 316 ENGINEERED SEQADV 2JYG ALA A 185 UNP P12497 MET 317 ENGINEERED
SEQRES 1 A 84 THR SER ILE LEU ASP ILE ARG GLN GLY PRO LYS GLU PRO SEQRES 2 A 84 PHE ARG ASP TYR VAL ASP ARG PHE TYR LYS THR LEU ARG SEQRES 3 A 84 ALA GLU GLN ALA SER GLN GLU VAL LYS ASN ALA ALA THR SEQRES 4 A 84 GLU THR LEU LEU VAL GLN ASN ALA ASN PRO ASP CYS LYS SEQRES 5 A 84 THR ILE LEU LYS ALA LEU GLY PRO GLY ALA THR LEU GLU SEQRES 6 A 84 GLU MET MET THR ALA CYS GLN GLY VAL GLY GLY PRO GLY SEQRES 7 A 84 HIS LYS ALA ARG VAL LEU
HELIX 1 1 PRO A 160 ARG A 173 1 14 HELIX 2 2 ALA A 185 ASN A 193 1 9 HELIX 3 3 ASN A 195 GLY A 206 1 12 HELIX 4 4 THR A 210 VAL A 221 1 12
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000