10 20 30 40 50 60 70 80 2JYD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 12-DEC-07 2JYD
TITLE STRUCTURE OF THE FIFTH ZINC FINGER OF MYELIN TRANSCRIPTION TITLE 2 FACTOR 1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: F5 DOMAIN OF MYELIN TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MYT1, NEURAL ZINC FINGER FACTOR 2, NZF-2; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX
KEYWDS ZINC-FINGER, MYT1, ALTERNATIVE SPLICING, DEVELOPMENTAL KEYWDS 2 PROTEIN, DIFFERENTIATION, DNA-BINDING, METAL-BINDING, KEYWDS 3 NEUROGENESIS, NUCLEUS, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION, METAL BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.GAMSJAEGER,M.K.SWANTON,F.J.KOBUS,E.LEHTOMAKI,J.A.LOWRY, AUTHOR 2 A.H.KWAN,J.M.MATTHEWS,J.P.MACKAY
REVDAT 3 24-FEB-09 2JYD 1 VERSN REVDAT 2 01-JUL-08 2JYD 1 JRNL REVDAT 1 15-JAN-08 2JYD 0
JRNL AUTH R.GAMSJAEGER,M.K.SWANTON,F.J.KOBUS,E.LEHTOMAKI, JRNL AUTH 2 J.A.LOWRY,A.H.KWAN,J.M.MATTHEWS,J.P.MACKAY JRNL TITL STRUCTURAL AND BIOPHYSICAL ANALYSIS OF THE DNA JRNL TITL 2 BINDING PROPERTIES OF MYELIN TRANSCRIPTION FACTOR JRNL TITL 3 1. JRNL REF J.BIOL.CHEM. V. 283 5158 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18073212 JRNL DOI 10.1074/JBC.M703772200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JYD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB100444.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM [U-13C; U-15N] F5, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 2D 1H-1H REMARK 210 NOESY, 2D 1H-1H TOCSY, 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 4 -144.69 -94.14 REMARK 500 1 SER A 7 33.62 -85.26 REMARK 500 1 ALA A 8 -159.51 58.64 REMARK 500 1 ASP A 9 37.56 -92.78 REMARK 500 1 ARG A 31 22.39 -143.53 REMARK 500 1 ALA A 39 101.40 -55.75 REMARK 500 1 SER A 42 -65.24 68.94 REMARK 500 2 ASP A 9 46.89 -84.96 REMARK 500 2 LYS A 11 -156.34 -143.63 REMARK 500 2 ARG A 38 42.74 -99.87 REMARK 500 2 LYS A 41 -64.24 -138.11 REMARK 500 2 ARG A 45 79.15 -154.47 REMARK 500 3 LEU A 10 -61.46 -100.27 REMARK 500 3 THR A 24 -70.10 -67.75 REMARK 500 3 ARG A 31 -27.68 -148.62 REMARK 500 3 LEU A 33 46.26 -77.68 REMARK 500 3 ALA A 39 88.75 -69.75 REMARK 500 3 SER A 42 41.05 -106.83 REMARK 500 4 SER A 2 74.28 52.65 REMARK 500 4 ALA A 8 113.01 68.08 REMARK 500 4 LYS A 11 141.10 68.98 REMARK 500 4 TYR A 27 -164.72 -129.09 REMARK 500 4 HIS A 30 -159.79 -155.53 REMARK 500 4 ARG A 31 -16.51 -154.68 REMARK 500 4 LYS A 40 43.78 -75.49 REMARK 500 4 SER A 42 -62.20 70.84 REMARK 500 5 ALA A 4 -142.13 -153.01 REMARK 500 5 HIS A 6 -105.29 59.56 REMARK 500 5 LYS A 11 109.03 66.10 REMARK 500 5 ASP A 18 -36.62 -144.17 REMARK 500 5 HIS A 30 -157.38 -136.23 REMARK 500 5 ARG A 31 -29.90 -147.08 REMARK 500 5 LYS A 41 -49.38 -147.99 REMARK 500 6 ALA A 4 -133.65 54.56 REMARK 500 6 SER A 7 58.59 -97.45 REMARK 500 6 ASP A 9 55.20 -90.37 REMARK 500 6 LEU A 33 33.19 -78.27 REMARK 500 6 LYS A 40 98.84 -53.83 REMARK 500 7 MET A 3 -88.68 69.01 REMARK 500 7 ALA A 4 -86.79 64.53 REMARK 500 7 ALA A 5 78.16 -117.09 REMARK 500 7 ALA A 8 -151.73 -113.68 REMARK 500 7 ASP A 9 68.15 -104.54 REMARK 500 7 LYS A 11 -154.20 -99.46 REMARK 500 7 ARG A 31 12.81 -155.95 REMARK 500 7 SER A 34 -55.03 -135.19 REMARK 500 7 LYS A 41 -71.78 -119.18 REMARK 500 8 ASP A 9 43.03 -83.33 REMARK 500 8 LYS A 11 156.96 178.73 REMARK 500 8 LYS A 40 -133.46 47.54 REMARK 500 8 LYS A 41 -138.77 -125.86 REMARK 500 9 SER A 7 -94.31 67.14 REMARK 500 9 ALA A 8 -106.09 44.10 REMARK 500 9 ARG A 31 15.33 -159.46 REMARK 500 9 LYS A 41 -118.12 -111.77 REMARK 500 10 ALA A 5 54.36 -113.77 REMARK 500 10 HIS A 6 -160.84 -124.95 REMARK 500 10 SER A 7 176.79 65.77 REMARK 500 10 ASP A 9 58.68 -90.87 REMARK 500 10 ARG A 38 39.77 -94.44 REMARK 500 10 LYS A 41 -117.92 -160.66 REMARK 500 11 ALA A 4 0.05 -177.75 REMARK 500 11 SER A 7 -164.61 -110.37 REMARK 500 11 LYS A 11 -158.53 -116.00 REMARK 500 11 ARG A 31 10.39 -156.34 REMARK 500 11 LEU A 33 33.86 -77.72 REMARK 500 11 LYS A 40 166.83 66.06 REMARK 500 11 ARG A 45 61.53 -154.75 REMARK 500 12 HIS A 6 -168.47 -119.58 REMARK 500 12 SER A 7 98.39 -61.80 REMARK 500 12 LYS A 11 143.12 71.89 REMARK 500 12 ARG A 31 38.33 -160.46 REMARK 500 12 CYS A 36 109.64 -58.94 REMARK 500 12 LYS A 41 -85.30 -93.45 REMARK 500 13 ALA A 5 -90.12 55.42 REMARK 500 13 SER A 7 31.95 -92.71 REMARK 500 13 ASP A 9 45.50 -98.71 REMARK 500 13 LYS A 11 -160.90 -126.13 REMARK 500 13 ARG A 31 8.70 -159.21 REMARK 500 13 LYS A 41 103.60 -57.93 REMARK 500 14 MET A 3 -72.45 -92.43 REMARK 500 14 ALA A 4 -72.38 -97.89 REMARK 500 14 ALA A 5 -102.22 -135.74 REMARK 500 14 TYR A 27 -168.61 -120.50 REMARK 500 14 ARG A 31 10.42 -153.41 REMARK 500 14 CYS A 36 109.62 -57.53 REMARK 500 14 LYS A 40 102.20 -60.00 REMARK 500 14 LYS A 41 -82.82 -102.78 REMARK 500 14 ARG A 45 62.70 -103.50 REMARK 500 15 ALA A 4 79.94 -155.48 REMARK 500 15 LYS A 11 130.62 64.59 REMARK 500 15 SER A 20 77.42 -107.72 REMARK 500 15 ARG A 31 19.24 -146.75 REMARK 500 15 SER A 34 -41.38 -132.92 REMARK 500 15 ALA A 39 99.28 -61.51 REMARK 500 15 LYS A 40 -147.50 58.72 REMARK 500 16 SER A 2 77.35 53.81 REMARK 500 16 ASP A 9 40.99 -158.61 REMARK 500 16 LYS A 11 -154.22 -135.62 REMARK 500 16 ARG A 31 -10.23 -146.69 REMARK 500 16 LEU A 33 23.03 -76.58 REMARK 500 16 LYS A 41 -115.25 49.91 REMARK 500 16 ARG A 45 -83.01 -122.53 REMARK 500 17 SER A 20 77.78 -115.87 REMARK 500 17 ARG A 31 15.48 -146.84 REMARK 500 17 LYS A 40 -99.47 56.54 REMARK 500 17 LYS A 41 -113.06 -169.39 REMARK 500 17 SER A 42 53.28 -93.62 REMARK 500 18 ALA A 4 -106.96 58.28 REMARK 500 18 CYS A 12 171.63 -57.13 REMARK 500 18 HIS A 30 -157.23 -140.30 REMARK 500 18 ARG A 31 -18.96 -155.71 REMARK 500 18 LEU A 33 23.87 -77.69 REMARK 500 18 LYS A 41 -89.17 -97.13 REMARK 500 18 SER A 42 48.19 -84.67 REMARK 500 19 ALA A 4 35.26 -154.60 REMARK 500 19 ASP A 9 34.80 -94.94 REMARK 500 19 LYS A 11 -151.37 -109.20 REMARK 500 19 ARG A 31 7.64 -154.14 REMARK 500 19 LEU A 33 41.56 -77.56 REMARK 500 19 ARG A 38 40.14 -108.74 REMARK 500 19 LYS A 41 -158.85 -113.55 REMARK 500 19 LEU A 44 77.81 -103.28 REMARK 500 20 ASP A 9 36.98 -79.80 REMARK 500 20 ARG A 31 11.86 -156.70 REMARK 500 20 LEU A 33 30.62 -77.00 REMARK 500 20 LYS A 41 -81.38 65.59 REMARK 500 20 SER A 42 95.57 -67.83 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 47 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 12 SG REMARK 620 2 CYS A 17 SG 110.0 REMARK 620 3 HIS A 30 NE2 107.8 110.1 REMARK 620 4 CYS A 36 SG 109.2 110.8 108.9 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 47
REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEE REF. 1 IN UNP DATABASE, MYT1_MOUSE.
DBREF 2JYD A 3 46 UNP Q8CFC2 MYT1_MOUSE 837 880
SEQADV 2JYD GLY A 1 UNP Q8CFC2 EXPRESSION TAG SEQADV 2JYD SER A 2 UNP Q8CFC2 EXPRESSION TAG SEQADV 2JYD ARG A 45 UNP Q8CFC2 LYS 879 SEE REMARK 999
SEQRES 1 A 46 GLY SER MET ALA ALA HIS SER ALA ASP LEU LYS CYS PRO SEQRES 2 A 46 THR PRO GLY CYS ASP GLY SER GLY HIS ILE THR GLY ASN SEQRES 3 A 46 TYR ALA SER HIS ARG SER LEU SER GLY CYS PRO ARG ALA SEQRES 4 A 46 LYS LYS SER GLY LEU ARG VAL
HET ZN A 47 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 SER A 7 LYS A 11 5 5
LINK SG CYS A 12 ZN ZN A 47 1555 1555 2.27 LINK SG CYS A 17 ZN ZN A 47 1555 1555 2.29 LINK NE2 HIS A 30 ZN ZN A 47 1555 1555 1.95 LINK SG CYS A 36 ZN ZN A 47 1555 1555 2.29
SITE 1 AC1 4 CYS A 12 CYS A 17 HIS A 30 CYS A 36
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000