10 20 30 40 50 60 70 80 2JY0 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MEMBRANE PROTEIN, VIRAL PROTEIN 04-DEC-07 2JY0
TITLE SOLUTION NMR STRUCTURE OF HCV NS2 PROTEIN, MEMBRANE SEGMENT TITLE 2 (1-27)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEASE NS2-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MEMBRANE SEGMENT, RESIDUES 1-27; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC PEPTIDE
KEYWDS MEMBRANE SEGMENT, HCV NS2 PROTEIN, MEMBRANE PROTEIN, VIRAL KEYWDS 2 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 40
AUTHOR R.MONTSERRET,F.PENIN
REVDAT 2 24-FEB-09 2JY0 1 VERSN REVDAT 1 16-SEP-08 2JY0 0
JRNL AUTH V.JIRASKO,R.MONTSERRET,N.APPEL,A.JANVIER, JRNL AUTH 2 L.EUSTACHI,C.BROHM,E.STEINMANN,T.PIETSCHMANN, JRNL AUTH 3 F.PENIN,R.BARTENSCHLAGER JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF JRNL TITL 2 NON-STRUCTURAL PROTEIN 2 FOR ITS ROLE IN HEPATITIS JRNL TITL 3 C VIRUS ASSEMBLY JRNL REF J.BIOL.CHEM. 2008 JRNL REFN ESSN 1083-351X JRNL PMID 18644781 JRNL DOI 10.1074/JBC.M803981200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JY0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-07. REMARK 100 THE RCSB ID CODE IS RCSB100431.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 308 REMARK 210 PH : NULL; NULL REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9MM NS2(1-27), REMARK 210 TRIFLUOROETHANOL/WATER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY, 2D 1H-1H REMARK 210 TOCSY, 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR, SPARKY, X-PLOR_NIH REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 71.46 60.29 REMARK 500 1 HIS A 25 71.52 55.04 REMARK 500 2 ARG A 3 53.76 -161.37 REMARK 500 2 MET A 5 -57.52 -132.77 REMARK 500 2 ALA A 7 -44.58 -139.72 REMARK 500 2 SER A 8 86.46 -69.98 REMARK 500 2 ALA A 9 -63.27 -175.65 REMARK 500 2 SER A 23 104.84 63.84 REMARK 500 3 ASP A 2 -164.50 59.37 REMARK 500 3 ARG A 3 -74.23 -124.38 REMARK 500 4 ASP A 2 -59.61 -163.18 REMARK 500 4 MET A 5 -42.19 -165.54 REMARK 500 5 ARG A 3 55.03 -156.51 REMARK 500 5 MET A 5 -62.30 -166.40 REMARK 500 5 SER A 8 -84.72 -159.02 REMARK 500 6 MET A 5 -60.97 -168.87 REMARK 500 6 ALA A 9 -45.14 -150.60 REMARK 500 6 SER A 23 68.35 64.23 REMARK 500 6 HIS A 25 -51.25 -136.05 REMARK 500 6 TYR A 26 75.30 57.92 REMARK 500 7 ASP A 2 -58.58 -131.63 REMARK 500 7 ARG A 3 -79.84 64.45 REMARK 500 7 ALA A 9 -64.74 -146.88 REMARK 500 7 HIS A 25 53.22 -113.31 REMARK 500 8 ASP A 2 -167.17 -103.64 REMARK 500 8 MET A 5 -35.06 -171.71 REMARK 500 8 ALA A 7 31.28 -161.03 REMARK 500 8 SER A 23 150.45 67.36 REMARK 500 9 HIS A 25 51.51 -104.87 REMARK 500 10 ASP A 2 -45.87 -155.16 REMARK 500 10 ARG A 3 69.21 60.69 REMARK 500 10 MET A 5 -70.73 -120.80 REMARK 500 10 ALA A 7 100.21 63.92 REMARK 500 11 MET A 5 -73.85 -88.26 REMARK 500 11 ALA A 6 18.51 56.67 REMARK 500 11 LEU A 22 -78.73 -119.81 REMARK 500 12 GLU A 4 19.06 57.99 REMARK 500 12 SER A 23 93.59 55.17 REMARK 500 13 ASP A 2 -76.36 65.18 REMARK 500 13 GLU A 4 -59.01 -158.06 REMARK 500 13 ALA A 9 -52.36 74.76 REMARK 500 13 SER A 23 99.88 61.68 REMARK 500 14 MET A 5 -64.58 -139.06 REMARK 500 14 LEU A 22 50.55 -118.57 REMARK 500 15 ARG A 3 -90.16 -90.99 REMARK 500 15 ALA A 9 -73.16 65.42 REMARK 500 15 SER A 23 90.90 62.09 REMARK 500 15 HIS A 25 -65.75 -129.65 REMARK 500 16 MET A 5 -45.77 -171.78 REMARK 500 16 ALA A 6 43.85 -92.15 REMARK 500 17 ASP A 2 -60.85 -156.52 REMARK 500 17 GLU A 4 -60.33 -93.82 REMARK 500 17 SER A 8 -162.46 59.74 REMARK 500 17 ALA A 9 39.82 -87.99 REMARK 500 17 LEU A 22 -75.27 -64.34 REMARK 500 17 SER A 23 -172.55 54.91 REMARK 500 18 ASP A 2 -65.65 66.66 REMARK 500 18 SER A 23 73.69 62.36 REMARK 500 18 TYR A 26 -168.19 61.16 REMARK 500 19 ASP A 2 -54.82 -133.38 REMARK 500 19 ALA A 9 83.82 39.75 REMARK 500 19 ALA A 12 -47.96 75.45 REMARK 500 19 LEU A 22 62.35 -102.08 REMARK 500 19 SER A 23 78.07 -117.07 REMARK 500 20 ALA A 6 -66.90 -96.70 REMARK 500 20 ALA A 7 21.37 -150.79 REMARK 500 20 SER A 23 167.24 68.67 REMARK 500 21 ALA A 12 -48.44 75.48 REMARK 500 21 TYR A 26 70.20 -103.93 REMARK 500 22 ARG A 3 -94.61 58.88 REMARK 500 22 GLU A 4 18.34 55.67 REMARK 500 22 MET A 5 -60.43 -171.79 REMARK 500 22 ALA A 7 -76.64 -152.20 REMARK 500 22 SER A 8 -76.62 57.33 REMARK 500 22 VAL A 13 -60.56 -142.56 REMARK 500 22 SER A 23 95.11 -165.90 REMARK 500 23 ALA A 9 -60.91 -139.09 REMARK 500 23 TYR A 26 79.65 59.12 REMARK 500 24 GLU A 4 -45.69 -137.66 REMARK 500 24 SER A 8 -164.64 54.05 REMARK 500 24 ALA A 12 -46.49 73.80 REMARK 500 25 GLU A 4 -63.94 -137.83 REMARK 500 25 SER A 8 47.52 -98.73 REMARK 500 25 ALA A 12 14.68 59.36 REMARK 500 25 VAL A 13 -58.07 -128.29 REMARK 500 25 SER A 23 96.86 61.76 REMARK 500 26 ARG A 3 43.29 -160.47 REMARK 500 26 GLU A 4 -58.03 -132.26 REMARK 500 26 ALA A 7 -99.81 -88.41 REMARK 500 26 SER A 8 17.68 54.54 REMARK 500 26 SER A 23 130.51 69.20 REMARK 500 27 ASP A 2 -57.38 -135.55 REMARK 500 27 ARG A 3 -135.84 -138.89 REMARK 500 27 GLU A 4 75.60 60.22 REMARK 500 27 ALA A 9 -65.99 -154.83 REMARK 500 27 SER A 23 163.04 67.88 REMARK 500 28 MET A 5 37.65 -148.97 REMARK 500 28 VAL A 13 -57.46 -139.81 REMARK 500 28 SER A 23 77.66 -152.10 REMARK 500 30 ASP A 2 107.84 61.57 REMARK 500 30 ALA A 7 80.07 -167.48 REMARK 500 30 ALA A 9 -69.35 66.53 REMARK 500 31 ARG A 3 19.33 58.13 REMARK 500 31 VAL A 13 -56.50 -126.65 REMARK 500 31 SER A 23 70.19 56.83 REMARK 500 32 ASP A 2 -87.61 -157.21 REMARK 500 32 ALA A 12 -59.09 -162.28 REMARK 500 32 LEU A 22 48.19 -102.25 REMARK 500 32 SER A 23 100.60 62.09 REMARK 500 32 HIS A 25 41.15 -144.20 REMARK 500 33 ARG A 3 -103.25 -161.72 REMARK 500 33 MET A 5 -45.84 -168.53 REMARK 500 33 ALA A 9 47.45 -78.87 REMARK 500 33 PRO A 24 93.01 -69.55 REMARK 500 34 ASP A 2 170.69 62.74 REMARK 500 34 ARG A 3 -52.56 -135.73 REMARK 500 34 SER A 23 160.78 70.14 REMARK 500 35 GLU A 4 -76.32 -145.32 REMARK 500 35 ALA A 9 56.59 -95.54 REMARK 500 35 ALA A 12 -60.31 -168.46 REMARK 500 35 SER A 23 109.71 -160.56 REMARK 500 35 HIS A 25 49.38 -107.71 REMARK 500 36 ALA A 12 -54.85 -164.39 REMARK 500 36 LEU A 22 83.72 63.68 REMARK 500 36 TYR A 26 59.59 -114.30 REMARK 500 37 ALA A 7 89.04 58.98 REMARK 500 37 ALA A 12 -57.22 -154.26 REMARK 500 37 HIS A 25 77.57 -162.46 REMARK 500 38 ALA A 7 83.90 52.90 REMARK 500 38 ALA A 9 59.03 -94.91 REMARK 500 38 HIS A 25 42.30 -152.07 REMARK 500 39 ARG A 3 -168.06 -119.19 REMARK 500 39 MET A 5 75.51 53.52 REMARK 500 39 ALA A 6 39.25 -95.70 REMARK 500 39 ALA A 7 96.74 55.21 REMARK 500 39 VAL A 13 -58.27 -143.37 REMARK 500 39 LEU A 22 47.60 -106.16 REMARK 500 40 ASP A 2 -139.38 57.06 REMARK 500 40 ARG A 3 -135.70 -76.77 REMARK 500 40 MET A 5 16.47 -146.99 REMARK 500 40 ALA A 12 -59.19 -168.91 REMARK 500 40 PRO A 24 73.32 -69.79 REMARK 500 40 HIS A 25 -56.42 -127.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 3 0.27 SIDE_CHAIN REMARK 500 2 ARG A 3 0.29 SIDE_CHAIN REMARK 500 3 ARG A 3 0.29 SIDE_CHAIN REMARK 500 4 ARG A 3 0.32 SIDE_CHAIN REMARK 500 5 ARG A 3 0.31 SIDE_CHAIN REMARK 500 6 ARG A 3 0.28 SIDE_CHAIN REMARK 500 7 ARG A 3 0.32 SIDE_CHAIN REMARK 500 8 ARG A 3 0.31 SIDE_CHAIN REMARK 500 9 ARG A 3 0.32 SIDE_CHAIN REMARK 500 10 ARG A 3 0.32 SIDE_CHAIN REMARK 500 11 ARG A 3 0.31 SIDE_CHAIN REMARK 500 12 ARG A 3 0.32 SIDE_CHAIN REMARK 500 13 ARG A 3 0.29 SIDE_CHAIN REMARK 500 14 ARG A 3 0.31 SIDE_CHAIN REMARK 500 15 ARG A 3 0.32 SIDE_CHAIN REMARK 500 16 ARG A 3 0.32 SIDE_CHAIN REMARK 500 17 ARG A 3 0.32 SIDE_CHAIN REMARK 500 18 ARG A 3 0.30 SIDE_CHAIN REMARK 500 19 ARG A 3 0.32 SIDE_CHAIN REMARK 500 20 ARG A 3 0.31 SIDE_CHAIN REMARK 500 21 ARG A 3 0.31 SIDE_CHAIN REMARK 500 22 ARG A 3 0.32 SIDE_CHAIN REMARK 500 23 ARG A 3 0.32 SIDE_CHAIN REMARK 500 24 ARG A 3 0.30 SIDE_CHAIN REMARK 500 25 ARG A 3 0.31 SIDE_CHAIN REMARK 500 26 ARG A 3 0.32 SIDE_CHAIN REMARK 500 27 ARG A 3 0.28 SIDE_CHAIN REMARK 500 28 ARG A 3 0.32 SIDE_CHAIN REMARK 500 29 ARG A 3 0.30 SIDE_CHAIN REMARK 500 30 ARG A 3 0.30 SIDE_CHAIN REMARK 500 31 ARG A 3 0.31 SIDE_CHAIN REMARK 500 32 ARG A 3 0.32 SIDE_CHAIN REMARK 500 33 ARG A 3 0.32 SIDE_CHAIN REMARK 500 34 ARG A 3 0.32 SIDE_CHAIN REMARK 500 35 ARG A 3 0.31 SIDE_CHAIN REMARK 500 36 ARG A 3 0.31 SIDE_CHAIN REMARK 500 37 ARG A 3 0.29 SIDE_CHAIN REMARK 500 38 ARG A 3 0.32 SIDE_CHAIN REMARK 500 39 ARG A 3 0.31 SIDE_CHAIN REMARK 500 40 ARG A 3 0.31 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15579 RELATED DB: BMRB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUNECE COME FROM A NATURAL VARIANT OF HCV STRAIN CON1.
DBREF 2JY0 A 1 27 UNP Q9WMX2 POLG_HCVCO 810 836
SEQADV 2JY0 ALA A 9 UNP Q9WMX2 CYS 818 ENGINEERED SEQADV 2JY0 VAL A 18 UNP Q9WMX2 ILE 827 SEE REMARK 999
SEQRES 1 A 27 MET ASP ARG GLU MET ALA ALA SER ALA GLY GLY ALA VAL SEQRES 2 A 27 PHE VAL GLY LEU VAL LEU LEU THR LEU SER PRO HIS TYR SEQRES 3 A 27 LYS
HELIX 1 1 ARG A 3 SER A 8 1 6 HELIX 2 2 GLY A 11 SER A 23 1 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000