10 20 30 40 50 60 70 80 2JXM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ELECTRON TRANSPORT 22-NOV-07 2JXM
TITLE ENSEMBLE OF TWENTY STRUCTURES OF THE PROCHLOROTHRIX TITLE 2 HOLLANDICA PLASTOCYANIN- CYTOCHROME F COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASTOCYANIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CYTOCHROME F; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROCHLOROTHRIX HOLLANDICA; SOURCE 3 ORGANISM_TAXID: 1223; SOURCE 4 GENE: PETE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PVAPC10; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PROCHLOROTHRIX HOLLANDICA; SOURCE 10 ORGANISM_TAXID: 1223; SOURCE 11 GENE: PETA; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR: PBAR
KEYWDS COPPER, ELECTRON TRANSPORT, METAL-BINDING, TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.HULSKER,M.BARANOVA,G.BULLERJAHN,M.UBBINK
REVDAT 3 24-FEB-09 2JXM 1 VERSN REVDAT 2 19-FEB-08 2JXM 1 JRNL REVDAT 1 12-FEB-08 2JXM 0
JRNL AUTH R.HULSKER,M.V.BARANOVA,G.S.BULLERJAHN,M.UBBINK JRNL TITL DYNAMICS IN THE TRANSIENT COMPLEX OF JRNL TITL 2 PLASTOCYANIN-CYTOCHROME F FROM PROCHLOROTHRIX JRNL TITL 3 HOLLANDICA. JRNL REF J.AM.CHEM.SOC. V. 130 1985 2008 JRNL REFN ISSN 0002-7863 JRNL PMID 18201089 JRNL DOI 10.1021/JA077453P
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, C.D. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RIGID BODY DOCKING BASED ON PDB REMARK 3 ENTRY 1B3I AND A HOMOLOGY MODEL OF CYTOCHROME F. DOCKING REMARK 3 ENERGIES BASED ON PSEUDOCONTACT AND CHEMICAL SHIFT REMARK 3 PERTURBATION RESTRAINTS. ENERGY MINIMISATION OF SIDE-CHAINS.
REMARK 4 REMARK 4 2JXM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-NOV-07. REMARK 100 THE RCSB ID CODE IS RCSB100418.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 85 UM [U-99% 15N] REMARK 210 PLASTOCYANIN, 50 UM CYTOCHROME REMARK 210 F, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, AZARA, ANSIG REMARK 210 METHOD USED : RIGID BODY DOCKING, ENERGY REMARK 210 MINIMISATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 21 CAB HEC B 250 1.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 ASN B 170 CA ASN B 170 CB 0.233 REMARK 500 3 ASN B 170 CA ASN B 170 CB 0.236 REMARK 500 4 ASN B 170 CA ASN B 170 CB 0.234 REMARK 500 6 ASN B 170 CA ASN B 170 CB 0.236 REMARK 500 7 GLN B 58 CG GLN B 58 CD -0.152 REMARK 500 8 ASN B 170 CA ASN B 170 CB 0.233 REMARK 500 11 ASN A 57 CB ASN A 57 CG -0.204 REMARK 500 12 ASN B 170 CA ASN B 170 CB 0.233 REMARK 500 16 ASN B 23 CA ASN B 23 CB 0.357 REMARK 500 17 ASN B 171 CB ASN B 171 CG -0.202 REMARK 500 17 ASN B 171 CG ASN B 171 OD1 0.392 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASN A 34 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 1 ASN B 170 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 1 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 2 ASN B 171 CB - CA - C ANGL. DEV. = -48.8 DEGREES REMARK 500 2 ASN B 171 N - CA - CB ANGL. DEV. = 39.9 DEGREES REMARK 500 2 ASN B 171 CB - CG - OD1 ANGL. DEV. = -18.2 DEGREES REMARK 500 2 ASN B 187 OD1 - CG - ND2 ANGL. DEV. = -29.8 DEGREES REMARK 500 2 ASN B 187 CB - CG - ND2 ANGL. DEV. = 29.2 DEGREES REMARK 500 2 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 3 ASN B 170 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 3 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 4 ASN A 34 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 4 TYR B 1 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 4 TYR B 1 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 4 TYR B 1 CB - CG - CD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 4 ASN B 170 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 4 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 5 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 6 ASN B 170 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 6 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 7 ASN A 57 N - CA - CB ANGL. DEV. = -16.3 DEGREES REMARK 500 7 GLN B 58 CG - CD - NE2 ANGL. DEV. = 16.5 DEGREES REMARK 500 7 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 8 ASN B 170 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 8 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 9 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 10 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 11 ASN A 57 N - CA - CB ANGL. DEV. = 20.7 DEGREES REMARK 500 11 ASN B 8 OD1 - CG - ND2 ANGL. DEV. = -21.5 DEGREES REMARK 500 11 ASN B 8 CB - CG - ND2 ANGL. DEV. = 19.0 DEGREES REMARK 500 11 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 12 TYR B 162 CA - CB - CG ANGL. DEV. = -11.9 DEGREES REMARK 500 12 TYR B 162 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 12 ASN B 170 CA - CB - CG ANGL. DEV. = -14.0 DEGREES REMARK 500 12 ASN B 171 OD1 - CG - ND2 ANGL. DEV. = -34.1 DEGREES REMARK 500 12 ASN B 171 CB - CG - ND2 ANGL. DEV. = 27.2 DEGREES REMARK 500 12 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 13 TYR B 4 CA - CB - CG ANGL. DEV. = -18.3 DEGREES REMARK 500 13 TYR B 4 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 13 ASN B 171 CB - CA - C ANGL. DEV. = -49.1 DEGREES REMARK 500 13 ASN B 171 N - CA - CB ANGL. DEV. = 40.1 DEGREES REMARK 500 13 ASN B 171 CB - CG - OD1 ANGL. DEV. = -18.4 DEGREES REMARK 500 13 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 14 SER B 168 CB - CA - C ANGL. DEV. = -23.9 DEGREES REMARK 500 14 SER B 168 N - CA - CB ANGL. DEV. = 10.5 DEGREES REMARK 500 14 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 15 GLY B 190 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 16 ASN A 34 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 16 ASN B 23 N - CA - CB ANGL. DEV. = 15.4 DEGREES REMARK 500 16 ASN B 23 CA - CB - CG ANGL. DEV. = -17.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 65 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 11 39.64 -90.55 REMARK 500 1 TYR A 12 29.65 38.21 REMARK 500 1 ALA A 25 105.44 -58.14 REMARK 500 1 LYS A 35 -167.56 -168.92 REMARK 500 1 PRO A 38 -168.86 -74.94 REMARK 500 1 ASN A 40 167.05 173.95 REMARK 500 1 PHE A 43 160.69 -47.71 REMARK 500 1 LYS A 45 143.61 167.35 REMARK 500 1 ALA A 54 -45.72 -157.34 REMARK 500 1 LEU A 60 102.41 -40.37 REMARK 500 1 SER A 66 97.35 -178.75 REMARK 500 1 PHE A 67 -86.77 -38.21 REMARK 500 1 PRO B 41 -96.46 -42.21 REMARK 500 1 ASP B 99 107.83 -54.98 REMARK 500 2 LYS A 11 39.71 -90.59 REMARK 500 2 TYR A 12 29.57 38.29 REMARK 500 2 ALA A 25 105.47 -58.13 REMARK 500 2 LYS A 35 -167.52 -168.88 REMARK 500 2 PRO A 38 -168.90 -74.97 REMARK 500 2 ASN A 40 166.94 173.97 REMARK 500 2 PHE A 43 160.60 -47.69 REMARK 500 2 LYS A 45 143.54 167.32 REMARK 500 2 ALA A 54 -45.64 -157.32 REMARK 500 2 LEU A 60 102.50 -40.44 REMARK 500 2 SER A 66 97.37 -178.69 REMARK 500 2 PHE A 67 -86.66 -38.23 REMARK 500 2 PRO B 41 -96.46 -42.21 REMARK 500 2 ASP B 99 107.83 -54.98 REMARK 500 3 LYS A 11 39.68 -90.58 REMARK 500 3 TYR A 12 29.57 38.25 REMARK 500 3 ALA A 25 105.50 -58.12 REMARK 500 3 LYS A 35 -167.50 -168.88 REMARK 500 3 PRO A 38 -168.87 -75.03 REMARK 500 3 ASN A 40 166.95 173.99 REMARK 500 3 PHE A 43 160.65 -47.67 REMARK 500 3 LYS A 45 143.57 167.29 REMARK 500 3 ALA A 54 -45.68 -157.38 REMARK 500 3 LEU A 60 102.50 -40.40 REMARK 500 3 SER A 66 97.36 -178.66 REMARK 500 3 PHE A 67 -86.74 -38.19 REMARK 500 3 PRO B 41 -96.46 -42.21 REMARK 500 3 ASP B 99 107.83 -54.98 REMARK 500 4 LYS A 11 39.59 -90.56 REMARK 500 4 TYR A 12 29.70 38.32 REMARK 500 4 ALA A 25 105.42 -58.17 REMARK 500 4 LYS A 35 -167.51 -168.87 REMARK 500 4 PRO A 38 -168.87 -74.93 REMARK 500 4 ASN A 40 166.98 173.98 REMARK 500 4 PHE A 43 160.59 -47.70 REMARK 500 4 LYS A 45 143.49 167.22 REMARK 500 4 ALA A 54 -45.73 -157.27 REMARK 500 4 LEU A 60 102.44 -40.50 REMARK 500 4 SER A 66 97.35 -178.69 REMARK 500 4 PHE A 67 -86.65 -38.24 REMARK 500 4 PRO B 41 -96.46 -42.21 REMARK 500 4 ASP B 99 107.83 -54.98 REMARK 500 5 LYS A 11 39.65 -90.61 REMARK 500 5 TYR A 12 29.69 38.28 REMARK 500 5 ALA A 25 105.42 -58.14 REMARK 500 5 LYS A 35 -167.57 -168.88 REMARK 500 5 PRO A 38 -168.85 -74.96 REMARK 500 5 ASN A 40 167.04 173.98 REMARK 500 5 PHE A 43 160.68 -47.79 REMARK 500 5 LYS A 45 143.63 167.34 REMARK 500 5 ALA A 54 -45.73 -157.32 REMARK 500 5 LEU A 60 102.44 -40.40 REMARK 500 5 SER A 66 97.34 -178.66 REMARK 500 5 PHE A 67 -86.71 -38.20 REMARK 500 5 PRO B 41 -96.46 -42.21 REMARK 500 5 ASP B 99 107.83 -54.98 REMARK 500 6 LYS A 11 39.71 -90.65 REMARK 500 6 TYR A 12 29.62 38.32 REMARK 500 6 ALA A 25 105.40 -58.11 REMARK 500 6 LYS A 35 -167.52 -168.89 REMARK 500 6 PRO A 38 -168.95 -74.96 REMARK 500 6 ASN A 40 166.99 173.94 REMARK 500 6 PHE A 43 160.60 -47.55 REMARK 500 6 LYS A 45 143.58 167.29 REMARK 500 6 ALA A 54 -45.65 -157.30 REMARK 500 6 LEU A 60 102.49 -40.49 REMARK 500 6 SER A 66 97.36 -178.75 REMARK 500 6 PHE A 67 -86.72 -38.13 REMARK 500 6 PRO B 41 -96.46 -42.21 REMARK 500 6 ASP B 99 107.83 -54.98 REMARK 500 7 LYS A 11 39.70 -90.57 REMARK 500 7 TYR A 12 29.65 38.23 REMARK 500 7 ALA A 25 105.42 -58.12 REMARK 500 7 LYS A 35 -167.53 -168.86 REMARK 500 7 PRO A 38 -168.87 -74.95 REMARK 500 7 ASN A 40 166.99 173.99 REMARK 500 7 PHE A 43 160.62 -47.66 REMARK 500 7 LYS A 45 143.54 167.30 REMARK 500 7 ALA A 54 -45.62 -157.28 REMARK 500 7 LEU A 60 102.47 -40.47 REMARK 500 7 SER A 66 97.37 -178.65 REMARK 500 7 PHE A 67 -86.72 -38.19 REMARK 500 7 PRO B 41 -96.46 -42.21 REMARK 500 7 ASP B 99 107.83 -54.98 REMARK 500 8 LYS A 11 39.73 -90.59 REMARK 500 8 TYR A 12 29.65 38.26 REMARK 500 8 ALA A 25 105.42 -58.15 REMARK 500 8 LYS A 35 -167.49 -168.89 REMARK 500 8 PRO A 38 -168.86 -74.99 REMARK 500 8 ASN A 40 166.95 173.94 REMARK 500 8 PHE A 43 160.59 -47.62 REMARK 500 8 LYS A 45 143.48 167.29 REMARK 500 8 ALA A 54 -45.63 -157.28 REMARK 500 8 LEU A 60 102.47 -40.39 REMARK 500 8 SER A 66 97.33 -178.68 REMARK 500 8 PHE A 67 -86.78 -38.16 REMARK 500 8 PRO B 41 -96.46 -42.21 REMARK 500 8 ASP B 99 107.83 -54.98 REMARK 500 9 LYS A 11 39.57 -90.58 REMARK 500 9 TYR A 12 29.62 38.37 REMARK 500 9 ALA A 25 105.42 -58.06 REMARK 500 9 LYS A 35 -167.53 -168.88 REMARK 500 9 PRO A 38 -168.87 -74.99 REMARK 500 9 ASN A 40 166.98 173.99 REMARK 500 9 PHE A 43 160.64 -47.59 REMARK 500 9 LYS A 45 143.54 167.35 REMARK 500 9 ALA A 54 -45.65 -157.28 REMARK 500 9 LEU A 60 102.47 -40.45 REMARK 500 9 SER A 66 97.36 -178.72 REMARK 500 9 PHE A 67 -86.71 -38.25 REMARK 500 9 PRO B 41 -96.46 -42.21 REMARK 500 9 ASP B 99 107.83 -54.98 REMARK 500 10 LYS A 11 39.68 -90.64 REMARK 500 10 TYR A 12 29.66 38.27 REMARK 500 10 ALA A 25 105.40 -58.05 REMARK 500 10 LYS A 35 -167.46 -168.85 REMARK 500 10 PRO A 38 -168.89 -74.98 REMARK 500 10 ASN A 40 167.07 174.01 REMARK 500 10 PHE A 43 160.63 -47.61 REMARK 500 10 LYS A 45 143.57 167.35 REMARK 500 10 ALA A 54 -45.66 -157.29 REMARK 500 10 LEU A 60 102.46 -40.42 REMARK 500 10 SER A 66 97.32 -178.70 REMARK 500 10 PHE A 67 -86.75 -38.21 REMARK 500 10 PRO B 41 -96.46 -42.21 REMARK 500 10 ASP B 99 107.83 -54.98 REMARK 500 11 LYS A 11 39.71 -90.57 REMARK 500 11 TYR A 12 29.64 38.24 REMARK 500 11 ALA A 25 105.42 -58.14 REMARK 500 11 LYS A 35 -167.50 -168.89 REMARK 500 11 PRO A 38 -168.89 -75.02 REMARK 500 11 ASN A 40 166.96 173.97 REMARK 500 11 PHE A 43 160.59 -47.72 REMARK 500 11 LYS A 45 143.55 167.26 REMARK 500 11 ALA A 54 -45.54 -157.31 REMARK 500 11 LEU A 60 102.50 -40.39 REMARK 500 11 SER A 66 97.31 -178.67 REMARK 500 11 PHE A 67 -86.74 -38.16 REMARK 500 11 PRO B 41 -96.46 -42.21 REMARK 500 11 ASP B 99 107.83 -54.98 REMARK 500 12 LYS A 11 39.64 -90.57 REMARK 500 12 TYR A 12 29.69 38.28 REMARK 500 12 ALA A 25 105.41 -58.10 REMARK 500 12 LYS A 35 -167.48 -168.89 REMARK 500 12 PRO A 38 -168.87 -74.98 REMARK 500 12 ASN A 40 167.03 173.97 REMARK 500 12 PHE A 43 160.56 -47.55 REMARK 500 12 LYS A 45 143.55 167.34 REMARK 500 12 ALA A 54 -45.71 -157.24 REMARK 500 12 LEU A 60 102.49 -40.49 REMARK 500 12 SER A 66 97.38 -178.72 REMARK 500 12 PHE A 67 -86.71 -38.23 REMARK 500 12 PRO B 41 -96.46 -42.21 REMARK 500 12 ASP B 99 107.83 -54.98 REMARK 500 13 LYS A 11 39.64 -90.60 REMARK 500 13 TYR A 12 29.62 38.34 REMARK 500 13 ALA A 25 105.48 -58.19 REMARK 500 13 LYS A 35 -167.49 -168.81 REMARK 500 13 PRO A 38 -168.86 -74.94 REMARK 500 13 ASN A 40 167.05 173.99 REMARK 500 13 PHE A 43 160.60 -47.67 REMARK 500 13 LYS A 45 143.53 167.25 REMARK 500 13 ALA A 54 -45.69 -157.28 REMARK 500 13 LEU A 60 102.44 -40.48 REMARK 500 13 SER A 66 97.35 -178.73 REMARK 500 13 PHE A 67 -86.66 -38.28 REMARK 500 13 PRO B 41 -96.46 -42.21 REMARK 500 13 ASP B 99 107.83 -54.98 REMARK 500 14 LYS A 11 39.65 -90.58 REMARK 500 14 TYR A 12 29.69 38.25 REMARK 500 14 ALA A 25 105.38 -58.16 REMARK 500 14 LYS A 35 -167.56 -168.92 REMARK 500 14 PRO A 38 -168.99 -74.90 REMARK 500 14 ASN A 40 166.94 173.90 REMARK 500 14 PHE A 43 160.61 -47.67 REMARK 500 14 LYS A 45 143.52 167.29 REMARK 500 14 ALA A 54 -45.67 -157.34 REMARK 500 14 LEU A 60 102.47 -40.44 REMARK 500 14 SER A 66 97.39 -178.72 REMARK 500 14 PHE A 67 -86.72 -38.21 REMARK 500 14 PRO B 41 -96.46 -42.21 REMARK 500 14 ASP B 99 107.83 -54.98 REMARK 500 15 LYS A 11 39.68 -90.57 REMARK 500 15 TYR A 12 29.64 38.26 REMARK 500 15 ALA A 25 105.36 -58.11 REMARK 500 15 LYS A 35 -167.49 -168.85 REMARK 500 15 PRO A 38 -168.92 -74.99 REMARK 500 15 ASN A 40 166.99 173.99 REMARK 500 15 PHE A 43 160.62 -47.65 REMARK 500 15 LYS A 45 143.52 167.33 REMARK 500 15 ALA A 54 -45.67 -157.25 REMARK 500 15 LEU A 60 102.47 -40.47 REMARK 500 15 SER A 66 97.36 -178.68 REMARK 500 15 PHE A 67 -86.75 -38.23 REMARK 500 15 PRO B 41 -96.46 -42.21 REMARK 500 15 ASP B 99 107.83 -54.98 REMARK 500 16 LYS A 11 39.66 -90.62 REMARK 500 16 TYR A 12 29.68 38.28 REMARK 500 16 ALA A 25 105.42 -58.19 REMARK 500 16 LYS A 35 -167.50 -168.86 REMARK 500 16 PRO A 38 -168.89 -74.94 REMARK 500 16 ASN A 40 167.02 173.98 REMARK 500 16 PHE A 43 160.61 -47.70 REMARK 500 16 LYS A 45 143.51 167.31 REMARK 500 16 ALA A 54 -45.68 -157.31 REMARK 500 16 LEU A 60 102.43 -40.46 REMARK 500 16 SER A 66 97.36 -178.75 REMARK 500 16 PHE A 67 -86.72 -38.21 REMARK 500 16 PRO B 41 -96.46 -42.21 REMARK 500 16 ASP B 99 107.83 -54.98 REMARK 500 17 LYS A 11 39.70 -90.64 REMARK 500 17 TYR A 12 29.73 38.23 REMARK 500 17 ALA A 25 105.44 -58.21 REMARK 500 17 LYS A 35 -167.51 -168.87 REMARK 500 17 PRO A 38 -169.03 -74.92 REMARK 500 17 ASN A 40 166.96 173.93 REMARK 500 17 PHE A 43 160.62 -47.68 REMARK 500 17 LYS A 45 143.58 167.32 REMARK 500 17 ALA A 54 -45.57 -157.34 REMARK 500 17 LEU A 60 102.49 -40.43 REMARK 500 17 SER A 66 97.38 -178.73 REMARK 500 17 PHE A 67 -86.76 -38.11 REMARK 500 17 PRO B 41 -96.46 -42.21 REMARK 500 17 ASP B 99 107.83 -54.98 REMARK 500 18 LYS A 11 39.65 -90.61 REMARK 500 18 TYR A 12 29.64 38.30 REMARK 500 18 ALA A 25 105.42 -58.12 REMARK 500 18 LYS A 35 -167.49 -168.88 REMARK 500 18 PRO A 38 -168.87 -74.97 REMARK 500 18 ASN A 40 166.98 173.98 REMARK 500 18 PHE A 43 160.58 -47.61 REMARK 500 18 LYS A 45 143.53 167.32 REMARK 500 18 ALA A 54 -45.67 -157.26 REMARK 500 18 LEU A 60 102.48 -40.44 REMARK 500 18 SER A 66 97.31 -178.67 REMARK 500 18 PHE A 67 -86.77 -38.18 REMARK 500 18 PRO B 41 -96.46 -42.21 REMARK 500 18 ASP B 99 107.83 -54.98 REMARK 500 19 LYS A 11 39.69 -90.64 REMARK 500 19 TYR A 12 29.62 38.29 REMARK 500 19 ALA A 25 105.41 -58.14 REMARK 500 19 LYS A 35 -167.52 -168.88 REMARK 500 19 PRO A 38 -168.96 -74.95 REMARK 500 19 ASN A 40 166.97 173.90 REMARK 500 19 PHE A 43 160.62 -47.60 REMARK 500 19 LYS A 45 143.57 167.34 REMARK 500 19 ALA A 54 -45.64 -157.27 REMARK 500 19 LEU A 60 102.45 -40.41 REMARK 500 19 SER A 66 97.39 -178.69 REMARK 500 19 PHE A 67 -86.68 -38.25 REMARK 500 19 PRO B 41 -96.46 -42.21 REMARK 500 19 ASP B 99 107.83 -54.98 REMARK 500 20 LYS A 11 39.70 -90.63 REMARK 500 20 TYR A 12 29.70 38.21 REMARK 500 20 ALA A 25 105.42 -58.18 REMARK 500 20 LYS A 35 -167.51 -168.89 REMARK 500 20 PRO A 38 -168.90 -74.96 REMARK 500 20 ASN A 40 166.98 173.96 REMARK 500 20 PHE A 43 160.65 -47.66 REMARK 500 20 LYS A 45 143.52 167.29 REMARK 500 20 ALA A 54 -45.72 -157.23 REMARK 500 20 LEU A 60 102.45 -40.51 REMARK 500 20 SER A 66 97.33 -178.68 REMARK 500 20 PHE A 67 -86.72 -38.19 REMARK 500 20 PRO B 41 -96.46 -42.21 REMARK 500 20 ASP B 99 107.83 -54.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG B 158 0.22 SIDE_CHAIN REMARK 500 2 ARG B 158 0.13 SIDE_CHAIN REMARK 500 2 ASN B 171 0.17 SIDE_CHAIN REMARK 500 3 ARG B 158 0.08 SIDE_CHAIN REMARK 500 4 ARG A 86 0.13 SIDE_CHAIN REMARK 500 4 TYR B 1 0.07 SIDE_CHAIN REMARK 500 4 ARG B 158 0.24 SIDE_CHAIN REMARK 500 5 ARG B 158 0.20 SIDE_CHAIN REMARK 500 6 ARG B 158 0.23 SIDE_CHAIN REMARK 500 7 ARG B 158 0.20 SIDE_CHAIN REMARK 500 8 ARG B 158 0.19 SIDE_CHAIN REMARK 500 9 ARG B 158 0.11 SIDE_CHAIN REMARK 500 10 ARG B 158 0.17 SIDE_CHAIN REMARK 500 11 ARG A 86 0.08 SIDE_CHAIN REMARK 500 11 ARG B 158 0.18 SIDE_CHAIN REMARK 500 12 ARG B 158 0.15 SIDE_CHAIN REMARK 500 13 ARG B 158 0.32 SIDE_CHAIN REMARK 500 13 ASN B 171 0.17 SIDE_CHAIN REMARK 500 14 ARG A 86 0.09 SIDE_CHAIN REMARK 500 14 ARG B 158 0.32 SIDE_CHAIN REMARK 500 15 ARG B 158 0.19 SIDE_CHAIN REMARK 500 16 ARG A 86 0.15 SIDE_CHAIN REMARK 500 16 ARG B 158 0.18 SIDE_CHAIN REMARK 500 17 ARG B 158 0.21 SIDE_CHAIN REMARK 500 17 ASN B 171 0.18 SIDE_CHAIN REMARK 500 18 ARG B 158 0.26 SIDE_CHAIN REMARK 500 19 ARG B 158 0.14 SIDE_CHAIN REMARK 500 20 ARG A 86 0.14 SIDE_CHAIN REMARK 500 20 ARG B 158 0.13 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 CU A 98 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 ND1 REMARK 620 2 HIS A 85 ND1 118.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 HEC B 250 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 1 N REMARK 620 2 HIS B 25 NE2 170.2 REMARK 620 N 1
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 98 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 250
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B3I RELATED DB: PDB REMARK 900 PLASTOCYANIN REMARK 900 RELATED ID: 1CI3 RELATED DB: PDB REMARK 900 CYTOCHROME F FROM PHORMIDIUM
DBREF 2JXM A 1 97 UNP P50057 PLAS_PROHO 35 131 DBREF 2JXM B 1 249 UNP Q8RN59 Q8RN59_PROHO 47 295
SEQADV 2JXM SER A 2 UNP P50057 THR 36 ENGINEERED
SEQRES 1 A 97 ALA SER VAL GLN ILE LYS MET GLY THR ASP LYS TYR ALA SEQRES 2 A 97 PRO LEU TYR GLU PRO LYS ALA LEU SER ILE SER ALA GLY SEQRES 3 A 97 ASP THR VAL GLU PHE VAL MET ASN LYS VAL GLY PRO HIS SEQRES 4 A 97 ASN VAL ILE PHE ASP LYS VAL PRO ALA GLY GLU SER ALA SEQRES 5 A 97 PRO ALA LEU SER ASN THR LYS LEU ALA ILE ALA PRO GLY SEQRES 6 A 97 SER PHE TYR SER VAL THR LEU GLY THR PRO GLY THR TYR SEQRES 7 A 97 SER PHE TYR CYS THR PRO HIS ARG GLY ALA GLY MET VAL SEQRES 8 A 97 GLY THR ILE THR VAL GLU SEQRES 1 B 249 TYR PRO PHE TYR ALA GLN TYR ASN TYR ASP SER PRO ARG SEQRES 2 B 249 GLU ALA THR GLY LYS ILE VAL CYS ALA ASN CYS HIS LEU SEQRES 3 B 249 ALA LYS LYS THR VAL GLU ILE GLU VAL PRO GLN ALA VAL SEQRES 4 B 249 LEU PRO ASP THR VAL PHE LYS ALA VAL VAL LYS VAL PRO SEQRES 5 B 249 TYR ASP LEU ASP ILE GLN GLN VAL GLN ALA ASP GLY SER SEQRES 6 B 249 PRO SER GLY LEU ASN VAL GLY ALA VAL LEU MET LEU PRO SEQRES 7 B 249 GLU GLY PHE LYS LEU ALA PRO PRO GLU ARG VAL ASP GLU SEQRES 8 B 249 GLU LEU MET GLU GLU VAL GLY ASP PHE TYR TYR LEU VAL SEQRES 9 B 249 THR PRO TYR SER GLU THR ASP GLU ASN ILE LEU LEU ALA SEQRES 10 B 249 GLY PRO LEU PRO GLY GLU ASP TYR GLN GLU MET ILE PHE SEQRES 11 B 249 PRO ILE LEU SER PRO ASN PRO ALA THR ASP ALA GLY VAL SEQRES 12 B 249 TYR PHE GLY LYS TYR SER ILE HIS LEU GLY GLY ASN ARG SEQRES 13 B 249 GLY ARG GLY GLN VAL TYR PRO THR GLY GLU LEU SER ASN SEQRES 14 B 249 ASN ASN ALA PHE SER ALA SER ILE ALA GLY THR ILE ALA SEQRES 15 B 249 ALA ILE GLU ASP ASN GLY PHE GLY PHE ASP VAL THR ILE SEQRES 16 B 249 GLN PRO GLU ASP GLY ASP ALA VAL VAL THR SER ILE LEU SEQRES 17 B 249 PRO GLY PRO GLU LEU ILE VAL ALA VAL GLY ASP THR VAL SEQRES 18 B 249 GLU ALA GLY GLN LEU LEU THR THR ASN PRO ASN VAL GLY SEQRES 19 B 249 GLY PHE GLY GLN MET ASP SER GLU ILE VAL LEU GLN SER SEQRES 20 B 249 SER SER
HET CU A 98 1 HET HEC B 250 75
HETNAM CU COPPER (II) ION HETNAM HEC HEME C
FORMUL 3 CU CU 2+ FORMUL 4 HEC C34 H34 FE N4 O4
HELIX 1 1 SER A 51 SER A 56 1 6 HELIX 2 2 TYR B 1 TYR B 9 1 9 HELIX 3 3 VAL B 20 HIS B 25 1 6 HELIX 4 4 PRO B 85 VAL B 89 5 5 HELIX 5 5 ASP B 90 GLU B 95 1 6 HELIX 6 6 ASP B 99 VAL B 104 1 6
SHEET 1 A 4 ALA A 13 GLU A 17 0 SHEET 2 A 4 VAL A 3 THR A 9 -1 N LYS A 6 O GLU A 17 SHEET 3 A 4 THR A 28 MET A 33 1 O GLU A 30 N VAL A 3 SHEET 4 A 4 TYR A 68 THR A 71 -1 O VAL A 70 N VAL A 29 SHEET 1 B 4 ALA A 20 ILE A 23 0 SHEET 2 B 4 VAL A 91 VAL A 96 1 O THR A 95 N LEU A 21 SHEET 3 B 4 THR A 77 TYR A 81 -1 N TYR A 78 O ILE A 94 SHEET 4 B 4 ILE A 42 LYS A 45 -1 N ASP A 44 O SER A 79 SHEET 1 C 4 GLU B 32 GLU B 34 0 SHEET 2 C 4 VAL B 44 LYS B 50 -1 O VAL B 48 N GLU B 34 SHEET 3 C 4 MET B 128 LEU B 133 -1 O ILE B 132 N PHE B 45 SHEET 4 C 4 LYS B 82 LEU B 83 -1 N LYS B 82 O LEU B 133 SHEET 1 D 6 ALA B 38 VAL B 39 0 SHEET 2 D 6 GLY B 235 LEU B 245 1 O VAL B 244 N VAL B 39 SHEET 3 D 6 GLY B 146 ARG B 156 -1 N GLY B 146 O LEU B 245 SHEET 4 D 6 ASN B 70 MET B 76 -1 N MET B 76 O HIS B 151 SHEET 5 D 6 ILE B 114 PRO B 121 -1 O LEU B 115 N LEU B 75 SHEET 6 D 6 THR B 105 PRO B 106 -1 N THR B 105 O LEU B 116 SHEET 1 E 2 GLN B 59 VAL B 60 0 SHEET 2 E 2 PRO B 66 SER B 67 -1 O SER B 67 N GLN B 59 SHEET 1 F 4 VAL B 203 ILE B 207 0 SHEET 2 F 4 GLY B 190 GLN B 196 -1 N ILE B 195 O VAL B 203 SHEET 3 F 4 GLY B 179 ILE B 184 -1 N THR B 180 O GLN B 196 SHEET 4 F 4 THR B 220 VAL B 221 -1 O VAL B 221 N GLY B 179
LINK ND1 HIS A 39 CU CU A 98 1555 1555 1.99 LINK ND1 HIS A 85 CU CU A 98 1555 1555 2.00 LINK N TYR B 1 FE HEC B 250 1555 1555 2.19 LINK NE2 HIS B 25 FE HEC B 250 1555 1555 2.47
CISPEP 1 GLU A 17 PRO A 18 1 0.15 CISPEP 2 GLY A 37 PRO A 38 1 -0.14 CISPEP 3 GLY B 118 PRO B 119 1 0.97 CISPEP 4 GLU A 17 PRO A 18 2 0.18 CISPEP 5 GLY A 37 PRO A 38 2 -0.05 CISPEP 6 GLY B 118 PRO B 119 2 0.97 CISPEP 7 GLU A 17 PRO A 18 3 0.16 CISPEP 8 GLY A 37 PRO A 38 3 0.00 CISPEP 9 GLY B 118 PRO B 119 3 0.97 CISPEP 10 GLU A 17 PRO A 18 4 0.15 CISPEP 11 GLY A 37 PRO A 38 4 -0.12 CISPEP 12 GLY B 118 PRO B 119 4 0.97 CISPEP 13 GLU A 17 PRO A 18 5 0.09 CISPEP 14 GLY A 37 PRO A 38 5 -0.12 CISPEP 15 GLY B 118 PRO B 119 5 0.97 CISPEP 16 GLU A 17 PRO A 18 6 -0.01 CISPEP 17 GLY A 37 PRO A 38 6 -0.08 CISPEP 18 GLY B 118 PRO B 119 6 0.97 CISPEP 19 GLU A 17 PRO A 18 7 0.14 CISPEP 20 GLY A 37 PRO A 38 7 -0.12 CISPEP 21 GLY B 118 PRO B 119 7 0.97 CISPEP 22 GLU A 17 PRO A 18 8 0.14 CISPEP 23 GLY A 37 PRO A 38 8 -0.04 CISPEP 24 GLY B 118 PRO B 119 8 0.97 CISPEP 25 GLU A 17 PRO A 18 9 0.07 CISPEP 26 GLY A 37 PRO A 38 9 -0.10 CISPEP 27 GLY B 118 PRO B 119 9 0.97 CISPEP 28 GLU A 17 PRO A 18 10 0.07 CISPEP 29 GLY A 37 PRO A 38 10 -0.08 CISPEP 30 GLY B 118 PRO B 119 10 0.97 CISPEP 31 GLU A 17 PRO A 18 11 0.21 CISPEP 32 GLY A 37 PRO A 38 11 0.01 CISPEP 33 GLY B 118 PRO B 119 11 0.97 CISPEP 34 GLU A 17 PRO A 18 12 0.09 CISPEP 35 GLY A 37 PRO A 38 12 -0.06 CISPEP 36 GLY B 118 PRO B 119 12 0.97 CISPEP 37 GLU A 17 PRO A 18 13 0.18 CISPEP 38 GLY A 37 PRO A 38 13 -0.11 CISPEP 39 GLY B 118 PRO B 119 13 0.97 CISPEP 40 GLU A 17 PRO A 18 14 0.02 CISPEP 41 GLY A 37 PRO A 38 14 -0.12 CISPEP 42 GLY B 118 PRO B 119 14 0.97 CISPEP 43 GLU A 17 PRO A 18 15 0.08 CISPEP 44 GLY A 37 PRO A 38 15 -0.07 CISPEP 45 GLY B 118 PRO B 119 15 0.97 CISPEP 46 GLU A 17 PRO A 18 16 0.12 CISPEP 47 GLY A 37 PRO A 38 16 -0.15 CISPEP 48 GLY B 118 PRO B 119 16 0.97 CISPEP 49 GLU A 17 PRO A 18 17 0.11 CISPEP 50 GLY A 37 PRO A 38 17 -0.11 CISPEP 51 GLY B 118 PRO B 119 17 0.97 CISPEP 52 GLU A 17 PRO A 18 18 0.14 CISPEP 53 GLY A 37 PRO A 38 18 -0.08 CISPEP 54 GLY B 118 PRO B 119 18 0.97 CISPEP 55 GLU A 17 PRO A 18 19 0.10 CISPEP 56 GLY A 37 PRO A 38 19 -0.10 CISPEP 57 GLY B 118 PRO B 119 19 0.97 CISPEP 58 GLU A 17 PRO A 18 20 0.09 CISPEP 59 GLY A 37 PRO A 38 20 -0.13 CISPEP 60 GLY B 118 PRO B 119 20 0.97
SITE 1 AC1 4 HIS A 39 CYS A 82 HIS A 85 MET A 90 SITE 1 AC2 16 THR A 83 TYR B 1 CYS B 21 CYS B 24 SITE 2 AC2 16 HIS B 25 GLN B 59 LEU B 69 ASN B 70 SITE 3 AC2 16 VAL B 71 GLY B 72 PRO B 119 GLY B 157 SITE 4 AC2 16 ARG B 158 GLY B 159 VAL B 161 PRO B 163
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000