2JX1 - Header Asymmetric Unit

HEADER TRANSCRIPTION/DNA 01-NOV-07 2JX1

TITLE STRUCTURE OF THE FIFTH ZINC FINGER OF MYELIN TRANSCRIPTION TITLE 2 FACTOR 1 IN COMPLEX WITH RARE DNA

COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYELIN TRANSCRIPTION FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THE FIFTH ZINC FINGER DOMAIN; COMPND 5 SYNONYM: MYT1, NEURAL ZINC FINGER FACTOR 2, NZF-2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*DAP*DCP*DCP*DGP*DAP*DAP*DAP*DGP*DTP*DTP*DCP*DAP*DC)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*DGP*DTP*DGP*DAP*DAP*DCP*DTP*DTP*DTP*DCP*DGP*DGP*DT)-3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES

KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION/DNA COMPLEX

EXPDTA SOLUTION NMR

NUMMDL 10

AUTHOR R.GAMSJAEGER,M.K.SWANTON,F.J.KOBUS,E.LEHTOMAKI,J.A.LOWRY, AUTHOR 2 A.H.KWAN,J.M.MATTHEWS,J.P.MACKAY

REVDAT 2 24-FEB-09 2JX1 1 VERSN REVDAT 1 11-DEC-07 2JX1 0

JRNL AUTH R.GAMSJAEGER,M.K.SWANTON,F.J.KOBUS,E.LEHTOMAKI, JRNL AUTH 2 J.A.LOWRY,A.H.KWAN,J.M.MATTHEWS,J.P.MACKAY JRNL TITL STRUCTURE OF THE FIFTH ZINC FINGER OF MYELIN JRNL TITL 2 TRANSCRIPTION FACTOR 1 IN COMPLEX WITH RARE DNA JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING, WATER REFINEMENT

REMARK 4 REMARK 4 2JX1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-NOV-07. REMARK 100 THE RCSB ID CODE IS RCSB100397.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 278 REMARK 210 PH : 7.4; 6.5 REMARK 210 IONIC STRENGTH : 50; 10 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 10MM PHOSPHATE, 50MM SODIUM REMARK 210 CHLORIDE, 1MM DTT, 100% H2O; REMARK 210 2.5MM MES, 10MM SODIUM REMARK 210 CHLORIDE, 1MM DTT, 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, 3D 15N- REMARK 210 SEPARATED NOESY, 3D HNHA, 2D REMARK 210 HSQC, 3D HNCA, 3D HNCACB, 3D REMARK 210 CBCA(CO)NH, 3D HNCO, 3D HCCH REMARK 210 TOCSY, 2D SINGLE & DOUBLE HALF REMARK 210 FILTERED NOESYS REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : HADDOCK DOCKING, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 DC B 2 N2 DG C 25 1.97 REMARK 500 O2 DC B 3 N2 DG C 24 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 LEU A 33 40.02 -83.82 REMARK 500 5 SER A 34 85.48 -64.97 REMARK 500 7 SER A 34 69.21 -117.68 REMARK 500 8 LYS A 11 147.26 -170.83 REMARK 500 9 SER A 32 -165.94 -168.49 REMARK 500 10 SER A 34 79.36 -119.07 REMARK 500 REMARK 500 REMARK: NULL

DBREF 2JX1 A 9 39 UNP Q8CFC2 MYT1_MOUSE 843 873 DBREF 2JX1 B 1 13 PDB 2JX1 2JX1 1 13 DBREF 2JX1 C 14 26 PDB 2JX1 2JX1 14 26

SEQRES 1 A 31 ASP LEU LYS CYS PRO THR PRO GLY CYS ASP GLY SER GLY SEQRES 2 A 31 HIS ILE THR GLY ASN TYR ALA SER HIS ARG SER LEU SER SEQRES 3 A 31 GLY CYS PRO ARG ALA SEQRES 1 B 13 DA DC DC DG DA DA DA DG DT DT DC DA DC SEQRES 1 C 13 DG DT DG DA DA DC DT DT DT DC DG DG DT

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000