10 20 30 40 50 60 70 80 2JWM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PLANT PROTEIN 16-OCT-07 2JWM
TITLE NMR SPATIAL SRTUCTURE OF TERNARY COMPLEX KALATA B7/MN2+/DPC TITLE 2 MICELLE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: KALATA-B7; COMPND 3 CHAIN: A
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OLDENLANDIA AFFINIS; SOURCE 3 ORGANISM_TAXID: 60225
KEYWDS CYCLOTIDE, CYCTINE KNOT, DIVALENT CATION-BINDING SITE, KEYWDS 2 CYTOLYSIS, HEMOLYSIS, KNOTTIN, PLANT DEFENSE, PLANT PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.D.NADEZHDIN,Z.O.SHENKAREV,L.SKJELDAL,A.S.ARSENIEV
REVDAT 3 24-FEB-09 2JWM 1 VERSN REVDAT 2 20-MAY-08 2JWM 1 JRNL REVDAT 1 11-MAR-08 2JWM 0
JRNL AUTH Z.O.SHENKAREV,K.D.NADEZHDIN,E.N.LYUKMANOVA, JRNL AUTH 2 V.A.SOBOL,L.SKJELDAL,A.S.ARSENIEV JRNL TITL DIVALENT CATION COORDINATION AND MODE OF MEMBRANE JRNL TITL 2 INTERACTION IN CYCLOTIDES: NMR SPATIAL STRUCTURE JRNL TITL 3 OF TERNARY COMPLEX KALATA B7/MN(2+)/DPC MICELLE JRNL REF J.INORG.BIOCHEM. V. 102 1246 2008 JRNL REFN ISSN 0162-0134 JRNL PMID 18295894 JRNL DOI 10.1016/J.JINORGBIO.2008.01.018
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER, WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JWM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-07. REMARK 100 THE RCSB ID CODE IS RCSB100382.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 313; 313 REMARK 210 PH : 2.6; 2.6; 5.0 REMARK 210 IONIC STRENGTH : 0; NULL; NULL REMARK 210 PRESSURE : AMBIENT; NULL; NULL REMARK 210 SAMPLE CONTENTS : 1.6MM KALATA B7, 90% H2O/10% REMARK 210 D2O; 0.6MM KALATA B7, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY, 2D DQF-COSY, REMARK 210 2D 1H-1H NOESY, 1D 1H, 1D REMARK 210 INVERTION-RECOVERY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY, DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, VNMR, XWINNMR, CYANA REMARK 210 1.1, MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N CYS A 1 C VAL A 29 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TRP A 19 145.33 -34.78 REMARK 500 2 TRP A 19 145.03 -34.60 REMARK 500 3 TRP A 19 145.20 -34.94 REMARK 500 4 TRP A 19 146.17 -34.67 REMARK 500 5 TRP A 19 145.25 -34.69 REMARK 500 6 TRP A 19 144.87 -34.79 REMARK 500 7 TRP A 19 146.11 -35.10 REMARK 500 8 TRP A 19 145.71 -34.48 REMARK 500 9 CYS A 5 43.14 -140.61 REMARK 500 9 TRP A 19 145.24 -34.52 REMARK 500 10 TRP A 19 145.19 -34.48 REMARK 500 10 ASN A 25 21.93 80.66 REMARK 500 11 TRP A 19 145.82 -34.89 REMARK 500 12 TRP A 19 146.80 -36.25 REMARK 500 12 ASN A 25 21.34 80.78 REMARK 500 13 TRP A 19 145.40 -34.69 REMARK 500 14 TRP A 19 145.31 -34.83 REMARK 500 15 TRP A 19 145.28 -34.57 REMARK 500 16 TRP A 19 145.04 -34.50 REMARK 500 17 TRP A 19 145.69 -34.82 REMARK 500 18 TRP A 19 145.70 -34.64 REMARK 500 19 TRP A 19 145.68 -34.41 REMARK 500 20 TRP A 19 145.96 -34.23 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2JWM A 1 25 UNP P58457 KAB7_OLDAF 80 104 DBREF 2JWM A 26 29 UNP P58457 KAB7_OLDAF 76 79
SEQRES 1 A 29 CYS GLY GLU THR CYS THR LEU GLY THR CYS TYR THR GLN SEQRES 2 A 29 GLY CYS THR CYS SER TRP PRO ILE CYS LYS ARG ASN GLY SEQRES 3 A 29 LEU PRO VAL
SHEET 1 A 2 THR A 16 SER A 18 0 SHEET 2 A 2 ILE A 21 LYS A 23 -1 O LYS A 23 N THR A 16
SSBOND 1 CYS A 1 CYS A 15 1555 1555 2.00 SSBOND 2 CYS A 5 CYS A 17 1555 1555 2.08 SSBOND 3 CYS A 10 CYS A 22 1555 1555 1.91
CISPEP 1 TRP A 19 PRO A 20 1 -8.68 CISPEP 2 TRP A 19 PRO A 20 2 -8.80 CISPEP 3 TRP A 19 PRO A 20 3 -8.80 CISPEP 4 TRP A 19 PRO A 20 4 -8.73 CISPEP 5 TRP A 19 PRO A 20 5 -8.86 CISPEP 6 TRP A 19 PRO A 20 6 -8.80 CISPEP 7 TRP A 19 PRO A 20 7 -8.86 CISPEP 8 TRP A 19 PRO A 20 8 -8.94 CISPEP 9 TRP A 19 PRO A 20 9 -8.71 CISPEP 10 TRP A 19 PRO A 20 10 -8.91 CISPEP 11 TRP A 19 PRO A 20 11 -8.76 CISPEP 12 TRP A 19 PRO A 20 12 -9.09 CISPEP 13 TRP A 19 PRO A 20 13 -8.95 CISPEP 14 TRP A 19 PRO A 20 14 -8.79 CISPEP 15 TRP A 19 PRO A 20 15 -8.73 CISPEP 16 TRP A 19 PRO A 20 16 -8.68 CISPEP 17 TRP A 19 PRO A 20 17 -8.79 CISPEP 18 TRP A 19 PRO A 20 18 -9.06 CISPEP 19 TRP A 19 PRO A 20 19 -8.94 CISPEP 20 TRP A 19 PRO A 20 20 -8.72
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000