2JWK - Header Asymmetric Unit

HEADER MEMBRANE PROTEIN 15-OCT-07 2JWK

TITLE SOLUTION STRUCTURE OF THE PERIPLASMIC DOMAIN OF TOLR FROM TITLE 2 HAEMOPHILUS INFLUENZAE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TOLR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PERIPLASMIC DOMAIN; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 727; SOURCE 4 GENE: TOLR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-STAR-(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 10 OTHER_DETAILS: THE VECTOR WAS MODIFIED TO INCLUDE A NATIVE SOURCE 11 E.COLI GST-TAG.

KEYWDS PROTEIN, PERIPLASMIC DOMAIN, MEMBRANE, INNER MEMBRANE, KEYWDS 2 PROTEIN TRANSPORT, TRANSMEMBRANE, TRANSPORT, MEMBRANE KEYWDS 3 PROTEIN

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR L.M.PARSONS,A.BAX

REVDAT 2 24-FEB-09 2JWK 1 VERSN REVDAT 1 01-APR-08 2JWK 0

JRNL AUTH L.M.PARSONS,A.GRISHAEV,A.BAX JRNL TITL THE PERIPLASMIC DOMAIN OF TOLR FROM HAEMOPHILUS JRNL TITL 2 INFLUENZAE FORMS A DIMER WITH A LARGE HYDROPHOBIC JRNL TITL 3 GROOVE: NMR SOLUTION STRUCTURE AND COMPARISON TO JRNL TITL 4 SAXS DATA. JRNL REF BIOCHEMISTRY V. 47 3131 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18269247 JRNL DOI 10.1021/BI702283X

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A.T. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2JWK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-OCT-07. REMARK 100 THE RCSB ID CODE IS RCSB100380.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.0 MM [U-99% 13C; U-99% REMARK 210 15N] TOLR, 50 MM SODIUM REMARK 210 PHOSPHATE, 50-100 MM SODIUM REMARK 210 CHLORIDE, 0.05 MM EDTA, 93% REMARK 210 H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D CBCA(CO)NH, 3D C(CO) REMARK 210 NH, 3D HNCO, 3D HNCACB, 3D 1H- REMARK 210 15N NOESY, 3D H(CCO)NH, 3D 1H- REMARK 210 13C NOESY, 3D HN(CO)CA, 3D REMARK 210 HNCO-QJ REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 22 175.52 -49.95 REMARK 500 1 PRO B 22 175.32 -49.77 REMARK 500 2 PRO A 22 -173.58 -48.20 REMARK 500 2 PRO B 22 -173.80 -48.29 REMARK 500 3 PRO A 22 -169.40 -48.89 REMARK 500 3 PRO B 22 -169.51 -49.11 REMARK 500 4 PRO A 22 177.22 -50.48 REMARK 500 4 PRO B 22 177.43 -50.59 REMARK 500 5 PRO A 22 174.09 -54.11 REMARK 500 5 PRO B 22 174.21 -54.30 REMARK 500 6 SER A 20 -64.02 -169.42 REMARK 500 6 PRO A 22 176.00 -51.51 REMARK 500 6 SER B 20 -64.38 -169.69 REMARK 500 6 PRO B 22 176.11 -51.80 REMARK 500 7 SER A 20 -63.57 -108.50 REMARK 500 7 PRO A 22 174.52 -52.67 REMARK 500 7 SER B 20 -63.07 -109.07 REMARK 500 7 PRO B 22 174.06 -52.41 REMARK 500 8 PRO A 22 173.90 -54.49 REMARK 500 8 PRO B 22 173.59 -54.38 REMARK 500 9 SER A 20 -61.83 -163.03 REMARK 500 9 PRO A 22 175.53 -52.37 REMARK 500 9 SER B 20 -61.90 -162.48 REMARK 500 9 PRO B 22 175.75 -52.42 REMARK 500 10 PRO A 22 174.92 -50.27 REMARK 500 10 PRO B 22 175.14 -51.11 REMARK 500 11 PRO A 22 173.24 -53.63 REMARK 500 11 PRO B 22 172.55 -53.44 REMARK 500 12 SER A 20 -48.02 -136.06 REMARK 500 12 PRO A 22 176.52 -52.90 REMARK 500 12 SER B 20 -48.14 -135.62 REMARK 500 12 PRO B 22 176.29 -52.55 REMARK 500 13 VAL A 21 140.23 -35.06 REMARK 500 13 PRO A 22 -171.71 -46.47 REMARK 500 13 VAL B 21 140.47 -34.93 REMARK 500 13 PRO B 22 -171.88 -46.25 REMARK 500 14 PRO A 22 -176.11 -47.85 REMARK 500 14 PRO B 22 -176.15 -47.52 REMARK 500 15 PRO A 22 173.30 -51.64 REMARK 500 15 PRO B 22 173.49 -51.79 REMARK 500 16 PRO A 22 173.14 -54.86 REMARK 500 16 PRO B 22 173.29 -54.83 REMARK 500 17 PRO A 22 174.89 -53.14 REMARK 500 17 PRO B 22 174.72 -53.14 REMARK 500 18 SER A 20 -57.91 -153.50 REMARK 500 18 PRO A 22 176.64 -55.45 REMARK 500 18 SER B 20 -57.86 -153.10 REMARK 500 18 PRO B 22 176.52 -55.18 REMARK 500 19 PRO A 22 -171.98 -48.39 REMARK 500 19 PRO B 22 -171.97 -48.28 REMARK 500 20 PRO A 22 -164.59 -50.97 REMARK 500 20 PRO B 22 -164.72 -50.64 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JWL RELATED DB: PDB

DBREF 2JWK A 21 92 UNP P43769 TOLR_HAEIN 59 130 DBREF 2JWK B 21 92 UNP P43769 TOLR_HAEIN 59 130

SEQADV 2JWK GLY A 19 UNP P43769 EXPRESSION TAG SEQADV 2JWK SER A 20 UNP P43769 EXPRESSION TAG SEQADV 2JWK GLY B 19 UNP P43769 EXPRESSION TAG SEQADV 2JWK SER B 20 UNP P43769 EXPRESSION TAG

SEQRES 1 A 74 GLY SER VAL PRO VAL ILE LEU GLU VAL ALA GLY ILE GLY SEQRES 2 A 74 LYS TYR ALA ILE SER ILE GLY GLY GLU ARG GLN GLU GLY SEQRES 3 A 74 LEU THR GLU GLU MET VAL THR GLN LEU SER ARG GLN GLU SEQRES 4 A 74 PHE ASP LYS ASP ASN ASN THR LEU PHE LEU VAL GLY GLY SEQRES 5 A 74 ALA LYS GLU VAL PRO TYR GLU GLU VAL ILE LYS ALA LEU SEQRES 6 A 74 ASN LEU LEU HIS LEU ALA GLY ILE LYS SEQRES 1 B 74 GLY SER VAL PRO VAL ILE LEU GLU VAL ALA GLY ILE GLY SEQRES 2 B 74 LYS TYR ALA ILE SER ILE GLY GLY GLU ARG GLN GLU GLY SEQRES 3 B 74 LEU THR GLU GLU MET VAL THR GLN LEU SER ARG GLN GLU SEQRES 4 B 74 PHE ASP LYS ASP ASN ASN THR LEU PHE LEU VAL GLY GLY SEQRES 5 B 74 ALA LYS GLU VAL PRO TYR GLU GLU VAL ILE LYS ALA LEU SEQRES 6 B 74 ASN LEU LEU HIS LEU ALA GLY ILE LYS

HELIX 1 1 THR A 46 ASP A 61 1 16 HELIX 2 2 PRO A 75 ALA A 89 1 15 HELIX 3 3 THR B 46 ASP B 61 1 16 HELIX 4 4 PRO B 75 ALA B 89 1 15

SHEET 1 A 8 GLU A 40 LEU A 45 0 SHEET 2 A 8 TYR A 33 ILE A 37 -1 N ILE A 37 O GLU A 40 SHEET 3 A 8 VAL A 23 VAL A 27 -1 N GLU A 26 O ALA A 34 SHEET 4 A 8 PHE A 66 GLY A 70 1 O GLY A 69 N VAL A 27 SHEET 5 A 8 PHE B 66 GLY B 70 -1 O VAL B 68 N VAL A 68 SHEET 6 A 8 VAL B 23 VAL B 27 1 N VAL B 27 O GLY B 69 SHEET 7 A 8 TYR B 33 ILE B 37 -1 O ALA B 34 N GLU B 26 SHEET 8 A 8 GLU B 40 LEU B 45 -1 O GLU B 40 N ILE B 37

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000