10 20 30 40 50 60 70 80 2JVX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 28-SEP-07 2JVX
TITLE SOLUTION STRUCTURE OF HUMAN NEMO ZINC FINGER
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NF-KAPPA-B ESSENTIAL MODULATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN; COMPND 5 SYNONYM: NEMO, NF-KAPPA-B ESSENTIAL MODIFIER, INHIBITOR OF COMPND 6 NUCLEAR FACTOR KAPPA-B KINASE SUBUNIT GAMMA, IKB KINASE COMPND 7 SUBUNIT GAMMA, I-KAPPA-B KINASE GAMMA, IKK-GAMMA, IKKG, COMPND 8 IKB KINASE-ASSOCIATED PROTEIN 1, IKKAP1, FIP-3; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHETIC PEPTIDE, TERMINI-BLOCKED BY N- SOURCE 4 ACETYL AND C-AMIDE GROUPS
KEYWDS CCHC CLASSICAL ZINC FINGER, NEMO ZINC FINGER, BETA-BETA- KEYWDS 2 ALPHA FOLD, COILED COIL, CYTOPLASM, DISEASE MUTATION, KEYWDS 3 ECTODERMAL DYSPLASIA, HOST-VIRUS INTERACTION, NUCLEUS, KEYWDS 4 TRANSCRIPTION, TRANSCRIPTION REGULATION, METAL BINDING KEYWDS 5 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR F.CORDIER,E.VINOLO,M.VERON,M.DELEPIERRE,F.AGOU
REVDAT 3 24-FEB-09 2JVX 1 VERSN REVDAT 2 08-APR-08 2JVX 1 JRNL REVDAT 1 18-MAR-08 2JVX 0
JRNL AUTH F.CORDIER,E.VINOLO,M.VERON,M.DELEPIERRE,F.AGOU JRNL TITL SOLUTION STRUCTURE OF NEMO ZINC FINGER AND IMPACT JRNL TITL 2 OF AN ANHIDROTIC ECTODERMAL DYSPLASIA WITH JRNL TITL 3 IMMUNODEFICIENCY-RELATED POINT MUTATION. JRNL REF J.MOL.BIOL. V. 377 1419 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18313693 JRNL DOI 10.1016/J.JMB.2008.01.048
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE, J.P. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS DETERMINED USING REMARK 3 NOES AND DIHEDRAL ANGLES DATA. TETRAHEDRAL GEOMETRY OF THE REMARK 3 ZINC COORDINATION WAS ASSUMED. OF THE 200 CALCULATED REMARK 3 CONFORMERS, THE 80 CONFORMERS WITH THE LOWEST TOTAL ENERGY REMARK 3 WERE REFINED IN WATER. THE 10 REFINED CONFORMERS OF LOWEST REMARK 3 ENERGY REPRESENT THE FINAL ENSEMBLE.
REMARK 4 REMARK 4 2JVX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-07. REMARK 100 THE RCSB ID CODE IS RCSB100357.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM NEMO ZF, 2 MM ZNS04, 2 REMARK 210 MM TCEP, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY, 2D 1H-1H REMARK 210 TOCSY, 2D PURGED-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 2.2, REMARK 210 NMRVIEW 5.03, ARIA 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 7 35.23 -77.13 REMARK 500 2 PRO A 7 43.75 -77.81 REMARK 500 2 LYS A 8 -40.96 -149.10 REMARK 500 3 ASP A 3 76.51 49.29 REMARK 500 3 LYS A 8 -74.48 -124.85 REMARK 500 4 PRO A 7 28.60 -73.18 REMARK 500 4 LYS A 8 -33.10 -141.98 REMARK 500 5 ASP A 3 -67.61 -104.01 REMARK 500 5 ILE A 27 -77.45 73.89 REMARK 500 6 ASP A 3 -160.94 66.29 REMARK 500 6 ILE A 27 -87.23 69.35 REMARK 500 7 SER A 2 162.77 68.58 REMARK 500 7 PRO A 7 42.49 -78.90 REMARK 500 7 LYS A 8 -39.48 -148.64 REMARK 500 7 ILE A 27 -72.30 -63.71 REMARK 500 8 ASP A 3 -169.64 -116.10 REMARK 500 8 PRO A 7 25.72 -74.95 REMARK 500 9 ASP A 3 -169.81 62.85 REMARK 500 9 LYS A 8 -78.45 -118.54 REMARK 500 10 SER A 2 -70.95 -134.70 REMARK 500 10 PRO A 7 32.21 -76.49 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 29 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 6 SG REMARK 620 2 CYS A 9 SG 109.3 REMARK 620 3 HIS A 22 NE2 108.0 103.1 REMARK 620 4 CYS A 26 SG 110.5 111.2 114.4 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 29
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JVY RELATED DB: PDB REMARK 900 RELATED ID: 15499 RELATED DB: BMRB
DBREF 2JVX A 3 28 UNP Q9Y6K9 NEMO_HUMAN 394 419
SEQADV 2JVX SER A 1 UNP Q9Y6K9 INSERTION SEQADV 2JVX SER A 2 UNP Q9Y6K9 INSERTION
SEQRES 1 A 28 SER SER ASP PHE CYS CYS PRO LYS CYS GLN TYR GLN ALA SEQRES 2 A 28 PRO ASP MET ASP THR LEU GLN ILE HIS VAL MET GLU CYS SEQRES 3 A 28 ILE GLU
HET ZN A 29 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 ASP A 15 CYS A 26 1 12
SHEET 1 A 2 PHE A 4 CYS A 5 0 SHEET 2 A 2 GLN A 12 ALA A 13 -1 O ALA A 13 N PHE A 4
LINK SG CYS A 6 ZN ZN A 29 1555 1555 2.30 LINK SG CYS A 9 ZN ZN A 29 1555 1555 2.32 LINK NE2 HIS A 22 ZN ZN A 29 1555 1555 2.08 LINK SG CYS A 26 ZN ZN A 29 1555 1555 2.34
SITE 1 AC1 6 CYS A 6 LYS A 8 CYS A 9 TYR A 11 SITE 2 AC1 6 HIS A 22 CYS A 26
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000