10 20 30 40 50 60 70 80 2JV5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 12-SEP-07 2JV5
TITLE NOGO54
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETICULON-4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1055-1108; COMPND 5 SYNONYM: NEURITE OUTGROWTH INHIBITOR, NOGO PROTEIN, FOOCEN, COMPND 6 NEUROENDOCRINE-SPECIFIC PROTEIN, NSP, NEUROENDOCRINE- COMPND 7 SPECIFIC PROTEIN C HOMOLOG, RTN-X, RETICULON-5; COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RTN4, KIAA0886, NOGO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32A
KEYWDS NOGO54, ALTERNATIVE SPLICING, ENDOPLASMIC RETICULUM, KEYWDS 2 MEMBRANE, PHOSPHORYLATION, TRANSMEMBRANE, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.LI,J.SONG
REVDAT 2 24-FEB-09 2JV5 1 VERSN REVDAT 1 16-SEP-08 2JV5 0
JRNL AUTH M.LI,J.SONG JRNL TITL STRUCTURE-BASED DESIGN OF BUFFER-SOLUBLE NOGO54: A JRNL TITL 2 MOLECULAR MIMIC OF NOGO-66 TO INHIBIT CNS NEURON JRNL TITL 3 REGENERATION JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JV5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB100329.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1MM [U-100% 15N] NOGO REMARK 210 PROTEIN; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 3D 1H-15N REMARK 210 NOESY, 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 3 -58.56 68.63 REMARK 500 1 VAL A 6 -169.11 -77.60 REMARK 500 1 HIS A 17 154.14 -42.10 REMARK 500 1 PRO A 18 -84.75 -75.00 REMARK 500 1 PHE A 19 -48.22 179.70 REMARK 500 1 HIS A 44 133.39 153.18 REMARK 500 1 VAL A 45 -60.63 -168.06 REMARK 500 2 ILE A 2 -85.40 -40.20 REMARK 500 2 TYR A 3 -35.45 179.26 REMARK 500 2 HIS A 17 153.65 62.34 REMARK 500 2 PRO A 18 -83.54 -75.01 REMARK 500 2 PHE A 19 -49.58 178.99 REMARK 500 2 HIS A 44 -91.02 -138.41 REMARK 500 3 TYR A 3 -29.24 166.22 REMARK 500 3 VAL A 6 -152.90 -131.25 REMARK 500 3 HIS A 17 -51.40 160.69 REMARK 500 3 LEU A 42 -88.95 -39.57 REMARK 500 3 HIS A 44 102.93 79.65 REMARK 500 3 VAL A 45 -46.81 -141.45 REMARK 500 4 TYR A 3 -51.46 75.73 REMARK 500 4 VAL A 6 168.63 -48.60 REMARK 500 4 TYR A 37 -27.42 -38.89 REMARK 500 4 HIS A 44 -80.12 -119.88 REMARK 500 5 ILE A 2 -145.23 36.09 REMARK 500 5 TYR A 3 -35.46 166.90 REMARK 500 5 VAL A 6 -158.13 -114.29 REMARK 500 5 LEU A 42 -73.16 -75.72 REMARK 500 5 HIS A 44 113.09 72.47 REMARK 500 5 VAL A 45 30.13 -165.61 REMARK 500 5 ASN A 46 -33.89 179.79 REMARK 500 6 ILE A 2 -178.08 -58.90 REMARK 500 6 TYR A 3 -44.40 -148.35 REMARK 500 6 VAL A 6 167.50 71.39 REMARK 500 6 HIS A 17 -59.41 -178.44 REMARK 500 6 LEU A 42 -83.72 -53.86 REMARK 500 7 TYR A 3 20.86 -152.28 REMARK 500 7 HIS A 17 159.79 -49.61 REMARK 500 7 LEU A 42 -85.15 -56.71 REMARK 500 7 HIS A 44 63.63 90.33 REMARK 500 7 ASN A 46 -30.22 -39.93 REMARK 500 8 ILE A 2 -70.65 -92.61 REMARK 500 8 TYR A 3 -51.23 73.82 REMARK 500 8 LYS A 4 -32.65 -37.44 REMARK 500 8 VAL A 6 -139.28 75.52 REMARK 500 8 HIS A 17 -56.65 165.63 REMARK 500 8 PRO A 18 -162.69 -74.94 REMARK 500 8 PHE A 19 -37.61 -175.75 REMARK 500 8 HIS A 44 60.99 -107.82 REMARK 500 8 VAL A 45 -45.23 170.44 REMARK 500 9 VAL A 6 -164.76 -58.05 REMARK 500 9 HIS A 17 -60.03 -177.39 REMARK 500 9 LEU A 42 -78.76 -41.62 REMARK 500 9 HIS A 44 105.57 86.22 REMARK 500 9 VAL A 45 -54.31 -153.00 REMARK 500 10 TYR A 3 -60.55 68.72 REMARK 500 10 VAL A 6 -90.00 -41.19 REMARK 500 10 ILE A 7 -34.42 74.50 REMARK 500 10 HIS A 17 -57.64 175.92 REMARK 500 10 HIS A 44 118.00 155.69 REMARK 500 10 VAL A 45 -55.90 -177.64 REMARK 500 11 TYR A 3 -54.88 73.66 REMARK 500 11 ILE A 7 -50.14 73.22 REMARK 500 11 HIS A 17 -48.24 156.34 REMARK 500 11 PRO A 18 -98.10 -74.95 REMARK 500 11 LEU A 42 -86.72 -42.59 REMARK 500 11 HIS A 44 115.30 85.54 REMARK 500 11 VAL A 45 -59.61 -163.35 REMARK 500 12 ILE A 2 -158.69 -66.57 REMARK 500 12 TYR A 3 -32.80 173.87 REMARK 500 12 VAL A 6 -169.03 44.28 REMARK 500 12 HIS A 17 104.89 -42.72 REMARK 500 12 PHE A 19 -50.89 -170.68 REMARK 500 12 LEU A 42 -79.24 -44.86 REMARK 500 12 HIS A 44 48.84 88.92 REMARK 500 13 ILE A 2 -80.54 -94.54 REMARK 500 13 TYR A 3 38.77 172.40 REMARK 500 13 LYS A 4 18.83 -145.57 REMARK 500 13 HIS A 17 74.46 -162.46 REMARK 500 13 HIS A 44 72.29 70.79 REMARK 500 14 TYR A 3 -56.24 71.45 REMARK 500 14 ILE A 7 -31.01 -39.74 REMARK 500 14 HIS A 17 105.75 -48.82 REMARK 500 14 PRO A 18 -82.04 -75.03 REMARK 500 14 PHE A 19 -44.06 -150.89 REMARK 500 14 LEU A 42 -86.77 -46.35 REMARK 500 14 HIS A 44 103.62 87.36 REMARK 500 14 VAL A 45 -61.56 -151.04 REMARK 500 15 ILE A 2 -89.14 -45.01 REMARK 500 15 TYR A 3 14.65 58.08 REMARK 500 15 VAL A 6 141.41 -33.88 REMARK 500 15 HIS A 17 78.64 44.88 REMARK 500 15 PRO A 18 -161.62 -74.94 REMARK 500 15 LEU A 42 -31.98 -38.02 REMARK 500 15 HIS A 44 105.97 167.32 REMARK 500 15 VAL A 45 -49.00 -152.09 REMARK 500 16 TYR A 3 32.32 -93.77 REMARK 500 16 VAL A 6 -150.03 35.10 REMARK 500 16 HIS A 17 156.20 59.20 REMARK 500 16 PHE A 19 -55.04 179.30 REMARK 500 16 HIS A 44 -102.14 -139.17 REMARK 500 17 ILE A 2 -54.21 -126.71 REMARK 500 17 ILE A 7 -30.12 -39.92 REMARK 500 17 HIS A 17 -58.36 177.77 REMARK 500 17 HIS A 44 122.78 159.12 REMARK 500 17 VAL A 45 -37.67 -177.93 REMARK 500 18 ILE A 2 -83.82 63.17 REMARK 500 18 TYR A 3 34.46 179.08 REMARK 500 18 LYS A 4 -33.29 170.27 REMARK 500 18 ILE A 7 -45.71 77.87 REMARK 500 18 HIS A 17 80.46 46.63 REMARK 500 18 PHE A 19 -55.10 -172.58 REMARK 500 18 HIS A 44 65.01 -156.65 REMARK 500 18 VAL A 45 -44.95 173.83 REMARK 500 19 LYS A 4 36.05 -176.82 REMARK 500 19 VAL A 6 -157.76 -58.74 REMARK 500 19 PRO A 18 -89.71 -74.99 REMARK 500 19 PHE A 19 -43.91 -173.23 REMARK 500 19 HIS A 44 108.99 -177.18 REMARK 500 19 VAL A 45 -43.32 161.76 REMARK 500 20 ILE A 2 -58.61 70.76 REMARK 500 20 VAL A 6 -152.15 35.88 REMARK 500 20 ALA A 9 -29.50 -39.13 REMARK 500 20 HIS A 17 77.71 39.02 REMARK 500 20 PRO A 18 -162.69 -74.88 REMARK 500 20 PHE A 19 -55.28 -138.56 REMARK 500 20 LEU A 42 -83.73 -55.21 REMARK 500 20 HIS A 44 68.73 66.05 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2JV5 A 1 54 UNP Q9NQC3 RTN4_HUMAN 1055 1108
SEQRES 1 A 54 ARG ILE TYR LYS GLY VAL ILE GLN ALA ILE GLN LYS SER SEQRES 2 A 54 ASP GLU GLY HIS PRO PHE ARG ALA TYR LEU GLU SER GLU SEQRES 3 A 54 VAL ALA ILE SER GLU GLU LEU VAL GLN LYS TYR SER ASN SEQRES 4 A 54 SER ALA LEU GLY HIS VAL ASN CYS THR ILE LYS GLU LEU SEQRES 5 A 54 ARG ARG
HELIX 1 1 ILE A 7 ASP A 14 5 8 HELIX 2 2 PHE A 19 GLU A 24 1 6 HELIX 3 3 GLU A 24 TYR A 37 1 14 HELIX 4 4 SER A 38 LEU A 42 5 5 HELIX 5 5 ASN A 46 ARG A 54 1 9
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000