10 20 30 40 50 60 70 80 2JTR - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 06-AUG-07 2JTR
TITLE RHODANESE PERSULFIDE FROM E. COLI
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHAGE SHOCK PROTEIN E; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.1; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 GENE: PSPE; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET21A
KEYWDS SOLUTION STRUCTURE RHODANESE PERSULFIDE, STRESS RESPONSE, KEYWDS 2 TRANSFERASE
EXPDTA SOLUTION NMR
NUMMDL 21
MDLTYP MINIMIZED AVERAGE
AUTHOR C.JIN,H.LI
REVDAT 2 24-FEB-09 2JTR 1 VERSN REVDAT 1 17-JUN-08 2JTR 0
JRNL AUTH H.LI,F.YANG,X.KANG,B.XIA,C.JIN JRNL TITL SOLUTION STRUCTURES AND BACKBONE DYNAMICS OF JRNL TITL 2 ESCHERICHIA COLI RHODANESE PSPE IN ITS SULFUR-FREE JRNL TITL 3 AND PERSULFIDE-INTERMEDIATE FORMS: IMPLICATIONS JRNL TITL 4 FOR THE CATALYTIC MECHANISM OF RHODANESE. JRNL REF BIOCHEMISTRY V. 47 4377 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18355042 JRNL DOI 10.1021/BI800039N
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 7 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JTR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB100279.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 0.04 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] RHODANESE REMARK 210 PERSULFIDE, 20 MM SODIUM REMARK 210 THIOSULFATE, 20 MM TRIS, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY, 2D 1H-15N HSQC, 3D REMARK 210 CBCA(CO)NH, 3D C(CO)NH, 3D REMARK 210 HNCO, 3D HNCA, 3D HNCACB, 3D REMARK 210 HBHA(CO)NH, 3D HN(CO)CA, 3D REMARK 210 H(CCO)NH, 3D HCCH-TOCSY, 3D 1H REMARK 210 -15N TOCSY, 3D HCCH-COSY, 3D REMARK 210 HCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, DYANA, MOLMOL, REMARK 210 NMRPIPE, NMRVIEW, SANE, TALOS, REMARK 210 NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 17 ARG A 8 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 16 134.43 -178.88 REMARK 500 1 ARG A 32 -25.11 -148.68 REMARK 500 1 ALA A 50 5.67 85.50 REMARK 500 3 GLU A 16 138.20 -172.63 REMARK 500 3 CYS A 48 -154.29 -150.39 REMARK 500 3 ALA A 50 -23.22 -141.74 REMARK 500 4 GLU A 16 147.82 -175.79 REMARK 500 4 ALA A 50 18.20 48.69 REMARK 500 5 GLU A 16 135.75 167.06 REMARK 500 5 CYS A 48 -155.75 -154.11 REMARK 500 5 ALA A 50 -37.08 -139.86 REMARK 500 6 GLU A 16 141.87 176.78 REMARK 500 6 ALA A 50 17.70 52.68 REMARK 500 7 GLU A 16 147.31 156.26 REMARK 500 7 ALA A 50 15.76 54.56 REMARK 500 8 ARG A 32 -13.75 -142.55 REMARK 500 9 GLU A 16 135.18 -179.96 REMARK 500 9 CYS A 48 -147.31 -148.75 REMARK 500 9 ALA A 50 -22.37 -146.25 REMARK 500 9 HIS A 68 36.60 -140.80 REMARK 500 9 ASP A 77 -32.35 -131.12 REMARK 500 10 PRO A 25 156.86 -48.37 REMARK 500 10 CYS A 48 -140.70 -158.09 REMARK 500 12 GLU A 16 133.51 176.23 REMARK 500 12 ALA A 50 23.52 -141.18 REMARK 500 13 GLN A 14 2.62 -69.86 REMARK 500 13 ARG A 32 -30.41 -137.58 REMARK 500 13 CYS A 48 -160.46 -169.00 REMARK 500 13 ALA A 50 13.83 53.45 REMARK 500 14 PRO A 25 151.46 -49.51 REMARK 500 14 ASN A 41 -34.67 -142.78 REMARK 500 14 CYS A 48 -154.26 -159.82 REMARK 500 14 ALA A 50 17.68 55.12 REMARK 500 14 HIS A 68 33.67 -77.50 REMARK 500 15 GLU A 16 137.90 -176.37 REMARK 500 15 PRO A 25 153.94 -49.83 REMARK 500 15 ARG A 32 -14.91 -141.14 REMARK 500 15 CYS A 48 -166.37 -162.21 REMARK 500 15 ALA A 50 17.12 56.41 REMARK 500 16 GLU A 16 135.99 -174.49 REMARK 500 16 ARG A 32 -21.70 -141.92 REMARK 500 16 ALA A 50 17.49 48.01 REMARK 500 18 ALA A 50 16.26 52.20 REMARK 500 19 ARG A 32 -37.40 -133.63 REMARK 500 19 ALA A 50 16.90 52.56 REMARK 500 20 CYS A 48 -153.02 -151.97 REMARK 500 20 ALA A 50 -18.88 -140.32 REMARK 500 21 PRO A 25 153.05 -49.80 REMARK 500 21 CYS A 48 -159.32 -156.33 REMARK 500 21 ALA A 50 35.09 -142.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 8 0.10 SIDE_CHAIN REMARK 500 1 ARG A 52 0.12 SIDE_CHAIN REMARK 500 3 ARG A 8 0.10 SIDE_CHAIN REMARK 500 6 ARG A 8 0.09 SIDE_CHAIN REMARK 500 8 TYR A 47 0.09 SIDE_CHAIN REMARK 500 11 ARG A 8 0.18 SIDE_CHAIN REMARK 500 15 ARG A 8 0.11 SIDE_CHAIN REMARK 500 18 TYR A 47 0.06 SIDE_CHAIN REMARK 500 21 ARG A 8 0.12 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JTQ RELATED DB: PDB REMARK 900 RELATED ID: 2JTS RELATED DB: PDB
DBREF 2JTR A 1 85 UNP P23857 PSPE_ECOLI 20 104
SEQRES 1 A 85 ALA GLU HIS TRP ILE ASP VAL ARG VAL PRO GLU GLN TYR SEQRES 2 A 85 GLN GLN GLU HIS VAL GLN GLY ALA ILE ASN ILE PRO LEU SEQRES 3 A 85 LYS GLU VAL LYS GLU ARG ILE ALA THR ALA VAL PRO ASP SEQRES 4 A 85 LYS ASN ASP THR VAL LYS VAL TYR CYS ASN ALA GLY ARG SEQRES 5 A 85 GLN SER GLY GLN ALA LYS GLU ILE LEU SER GLU MET GLY SEQRES 6 A 85 TYR THR HIS VAL GLU ASN ALA GLY GLY LEU LYS ASP ILE SEQRES 7 A 85 ALA MET PRO LYS VAL LYS GLY
HELIX 1 1 VAL A 9 GLN A 14 1 6 HELIX 2 2 PRO A 25 LYS A 30 1 6 HELIX 3 3 ARG A 32 VAL A 37 1 6 HELIX 4 4 GLY A 51 GLY A 65 1 15
SHEET 1 A 4 ILE A 22 ASN A 23 0 SHEET 2 A 4 GLU A 2 ASP A 6 1 N ASP A 6 O ILE A 22 SHEET 3 A 4 THR A 43 CYS A 48 1 O LYS A 45 N HIS A 3 SHEET 4 A 4 VAL A 69 GLY A 74 1 O GLU A 70 N VAL A 46 SHEET 1 B 2 HIS A 17 VAL A 18 0 SHEET 2 B 2 LYS A 82 VAL A 83 -1 O VAL A 83 N HIS A 17
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000