10 20 30 40 50 60 70 80 2JTF - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 30-JUL-07 2JTF
TITLE SOLUTION STRUCTURE OF THE PHF20L1 MBT DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 20-LIKE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-74; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: PHF20L1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX6-P1
KEYWDS HISTONE BINDING, MBT DOMAIN, SOLUTION NMR, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.BROCKMANN,A.N.IBERG,K.REHBEIN,A.DIEHL,M.T.BEDFORD, AUTHOR 2 H.OSCHKINAT
REVDAT 2 24-FEB-09 2JTF 1 VERSN REVDAT 1 19-AUG-08 2JTF 0
JRNL AUTH C.BROCKMANN,A.N.IBERG,K.REHBEIN,A.DIEHL, JRNL AUTH 2 M.T.BEDFORD,H.OSCHKINAT JRNL TITL STRUCTURAL ANALYSIS OF HISTONE H4K20 METHYLLYSINE JRNL TITL 2 RECOGNITION BY THE MBT DOMAIN OF PHF20L1 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.13 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IN EXPLICIT WATER
REMARK 4 REMARK 4 2JTF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-07. REMARK 100 THE RCSB ID CODE IS RCSB100267.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.89 MM [U-100% 13C; U-100% REMARK 210 15N] PHF20L1, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; REMARK 210 0.89 MM [U-100% 13C; U-100% REMARK 210 15N] PHF20L1, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D CBCA(CO)NH, 3D REMARK 210 HNCACB, 3D 1H-15N NOESY, 3D 1H REMARK 210 -13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.6, SPARKY, ANALYSIS REMARK 210 1.0.12, X-PLOR_NIH 2.13 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 ARG A -6 REMARK 465 ARG A -5 REMARK 465 ALA A -4 REMARK 465 SER A -3 REMARK 465 VAL A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 PRO A 6 REMARK 465 PRO A 71 REMARK 465 ALA A 72 REMARK 465 LEU A 73 REMARK 465 ARG A 74
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 11 109.19 -57.81 REMARK 500 1 ASP A 23 -165.50 152.93 REMARK 500 1 TYR A 24 -52.97 61.70 REMARK 500 1 GLN A 26 34.80 70.30 REMARK 500 1 TRP A 50 118.20 -166.69 REMARK 500 1 ARG A 53 -178.37 66.69 REMARK 500 1 TYR A 54 -5.61 -143.28 REMARK 500 1 ASP A 61 29.16 47.97 REMARK 500 1 ASN A 63 -69.06 -158.77 REMARK 500 1 PRO A 67 -169.41 -66.14 REMARK 500 2 ILE A 11 101.00 -54.36 REMARK 500 2 GLN A 26 35.11 73.44 REMARK 500 2 GLU A 48 -71.95 -84.51 REMARK 500 2 SER A 51 -74.74 -47.50 REMARK 500 2 ARG A 53 -68.19 66.82 REMARK 500 2 ASN A 63 -71.75 -142.22 REMARK 500 2 GLU A 69 11.82 -69.07 REMARK 500 3 ILE A 11 106.80 -46.01 REMARK 500 3 GLN A 26 56.29 72.85 REMARK 500 3 GLU A 48 -27.54 67.60 REMARK 500 3 SER A 51 21.10 -141.76 REMARK 500 3 TYR A 54 -158.44 54.84 REMARK 500 3 SER A 62 -80.38 -87.72 REMARK 500 3 ASN A 63 19.52 -148.57 REMARK 500 3 ARG A 64 -29.00 -168.59 REMARK 500 4 ARG A 8 -40.70 -166.43 REMARK 500 4 PRO A 9 -138.44 -97.58 REMARK 500 4 ILE A 11 105.97 -41.15 REMARK 500 4 GLN A 26 39.89 72.01 REMARK 500 4 ARG A 49 84.94 42.49 REMARK 500 4 SER A 51 -82.12 70.09 REMARK 500 4 ASN A 63 -38.68 -173.97 REMARK 500 4 PRO A 67 -171.54 -67.49 REMARK 500 5 ILE A 11 105.73 -47.21 REMARK 500 5 TYR A 24 -57.30 56.16 REMARK 500 5 GLN A 26 35.26 71.99 REMARK 500 5 ARG A 49 -82.00 -134.86 REMARK 500 5 TRP A 50 -162.19 52.87 REMARK 500 5 HIS A 52 -80.60 67.68 REMARK 500 5 ASP A 55 102.57 66.57 REMARK 500 5 ASN A 63 -50.28 -135.23 REMARK 500 5 GLU A 69 96.85 -44.99 REMARK 500 6 ILE A 11 100.99 -46.37 REMARK 500 6 GLN A 26 59.64 71.00 REMARK 500 6 SER A 51 87.44 174.71 REMARK 500 6 ASP A 55 -159.70 56.71 REMARK 500 6 TYR A 59 43.00 -69.28 REMARK 500 6 TRP A 60 -47.33 71.37 REMARK 500 6 ASP A 61 81.70 -163.49 REMARK 500 6 ASN A 63 -74.53 -165.70 REMARK 500 7 ILE A 11 104.31 -42.86 REMARK 500 7 TYR A 24 -69.33 48.51 REMARK 500 7 GLU A 48 -75.75 -140.81 REMARK 500 7 TRP A 50 -62.62 -149.57 REMARK 500 7 HIS A 52 -52.78 -157.52 REMARK 500 7 ARG A 53 104.95 -175.95 REMARK 500 7 TRP A 60 107.18 -50.61 REMARK 500 7 ASN A 63 -78.17 -139.36 REMARK 500 8 ARG A 8 93.97 79.79 REMARK 500 8 ILE A 11 98.57 -69.62 REMARK 500 8 GLN A 26 58.92 72.13 REMARK 500 8 ASP A 37 64.35 -101.63 REMARK 500 8 HIS A 52 -72.36 74.44 REMARK 500 8 TYR A 54 -70.98 66.15 REMARK 500 8 ASP A 61 15.27 -140.97 REMARK 500 8 ASN A 63 -53.51 67.58 REMARK 500 8 ARG A 64 16.71 -165.07 REMARK 500 8 GLU A 69 10.80 -161.67 REMARK 500 9 ARG A 8 89.62 61.31 REMARK 500 9 PRO A 9 47.67 -90.20 REMARK 500 9 ILE A 11 106.89 -56.27 REMARK 500 9 PHE A 13 49.30 -79.84 REMARK 500 9 TYR A 24 -42.96 24.95 REMARK 500 9 ARG A 49 95.53 73.88 REMARK 500 9 HIS A 52 -68.16 -177.59 REMARK 500 9 ASP A 55 78.40 -114.30 REMARK 500 9 ASN A 63 -71.89 -160.09 REMARK 500 9 ARG A 64 28.96 -147.87 REMARK 500 9 PRO A 67 -162.05 -73.91 REMARK 500 9 GLU A 69 106.57 -57.99 REMARK 500 10 ILE A 11 101.87 -47.95 REMARK 500 10 SER A 31 -166.01 -100.01 REMARK 500 10 PHE A 47 -70.85 -73.89 REMARK 500 10 GLU A 48 -60.17 163.29 REMARK 500 10 ARG A 49 119.54 -169.67 REMARK 500 10 TRP A 50 -57.96 -137.08 REMARK 500 10 SER A 51 58.43 -157.67 REMARK 500 10 HIS A 52 -176.53 72.18 REMARK 500 10 ARG A 53 71.25 59.55 REMARK 500 10 ASN A 63 -32.73 -170.20 REMARK 500 11 ILE A 11 102.31 -46.87 REMARK 500 11 TYR A 24 4.15 -65.31 REMARK 500 11 GLN A 26 43.29 73.28 REMARK 500 11 ARG A 49 95.56 66.56 REMARK 500 11 SER A 51 -83.67 61.81 REMARK 500 11 ASN A 63 -73.28 -131.29 REMARK 500 11 ARG A 64 40.35 -104.10 REMARK 500 11 PRO A 67 -142.45 -73.33 REMARK 500 11 GLU A 69 24.73 48.34 REMARK 500 12 PRO A 9 -158.24 -101.76 REMARK 500 12 ILE A 11 103.48 -54.17 REMARK 500 12 GLN A 26 50.19 72.02 REMARK 500 12 ARG A 49 82.16 52.74 REMARK 500 12 SER A 51 -159.89 64.42 REMARK 500 12 HIS A 52 -80.09 69.17 REMARK 500 12 TRP A 60 107.94 -51.98 REMARK 500 12 ASN A 63 -39.14 62.78 REMARK 500 12 GLU A 69 42.10 -87.22 REMARK 500 13 ARG A 8 81.54 59.95 REMARK 500 13 PRO A 9 44.23 -76.92 REMARK 500 13 ILE A 11 97.23 -43.89 REMARK 500 13 GLN A 26 48.21 72.33 REMARK 500 13 ARG A 49 105.26 60.97 REMARK 500 13 HIS A 52 70.48 -109.18 REMARK 500 13 ARG A 53 -77.70 63.43 REMARK 500 13 TYR A 54 -41.82 -171.90 REMARK 500 13 TRP A 60 -141.56 -77.00 REMARK 500 13 ASN A 63 -54.09 -168.11 REMARK 500 13 GLU A 69 -60.10 54.51 REMARK 500 14 ARG A 8 76.80 51.30 REMARK 500 14 GLN A 26 60.48 74.48 REMARK 500 14 ARG A 49 134.07 166.37 REMARK 500 14 TRP A 50 -164.73 -168.36 REMARK 500 14 ARG A 53 -79.76 -167.53 REMARK 500 14 TYR A 54 -48.19 -159.20 REMARK 500 14 ASN A 63 -32.04 -137.89 REMARK 500 14 LEU A 68 -65.70 68.74 REMARK 500 14 GLU A 69 -18.95 166.97 REMARK 500 15 ASP A 23 -162.34 152.14 REMARK 500 15 TYR A 24 -68.90 58.67 REMARK 500 15 HIS A 52 -41.58 168.77 REMARK 500 15 ARG A 53 125.82 -175.18 REMARK 500 15 ASP A 55 93.59 71.12 REMARK 500 15 TRP A 60 -72.02 -43.98 REMARK 500 15 ASP A 61 77.70 -119.89 REMARK 500 15 ASN A 63 -20.57 165.13 REMARK 500 15 PRO A 67 -167.17 -69.05 REMARK 500 16 ARG A 8 87.28 65.40 REMARK 500 16 ILE A 11 84.41 -67.65 REMARK 500 16 GLN A 26 42.91 71.59 REMARK 500 16 LYS A 35 150.22 177.51 REMARK 500 16 ARG A 49 106.17 59.86 REMARK 500 16 SER A 51 -90.88 68.64 REMARK 500 16 ASP A 61 82.24 -150.79 REMARK 500 16 ASN A 63 -27.21 174.97 REMARK 500 16 GLU A 69 48.41 37.97 REMARK 500 17 ILE A 11 102.87 -54.12 REMARK 500 17 TYR A 24 -9.06 -57.70 REMARK 500 17 GLN A 26 48.51 71.88 REMARK 500 17 HIS A 52 -71.17 -81.92 REMARK 500 17 ARG A 53 20.55 -146.37 REMARK 500 17 TYR A 54 -54.87 64.35 REMARK 500 17 ILE A 58 -146.21 -132.21 REMARK 500 17 TYR A 59 -156.82 -135.48 REMARK 500 17 TRP A 60 -153.04 -80.54 REMARK 500 17 ASN A 63 -67.89 -164.91 REMARK 500 17 ARG A 64 50.84 -155.86 REMARK 500 17 PRO A 67 -168.12 -77.36 REMARK 500 18 PRO A 9 96.41 -66.33 REMARK 500 18 ILE A 11 103.68 -48.82 REMARK 500 18 TYR A 24 -21.39 -24.92 REMARK 500 18 GLN A 26 36.03 74.28 REMARK 500 18 HIS A 52 -92.83 176.96 REMARK 500 18 TYR A 54 -24.84 73.90 REMARK 500 18 ASN A 63 -38.37 -159.61 REMARK 500 18 ARG A 64 27.33 -153.63 REMARK 500 19 PHE A 13 45.32 -75.95 REMARK 500 19 ASP A 23 -171.28 166.37 REMARK 500 19 TYR A 24 -60.54 54.60 REMARK 500 19 ARG A 49 30.43 -152.29 REMARK 500 19 HIS A 52 -76.27 -72.28 REMARK 500 19 TYR A 54 -49.18 67.25 REMARK 500 19 TRP A 60 99.28 -69.42 REMARK 500 19 ASN A 63 -34.12 -141.65 REMARK 500 20 TYR A 24 5.33 -62.94 REMARK 500 20 GLN A 26 58.44 83.80 REMARK 500 20 GLU A 48 49.70 -83.61 REMARK 500 20 ARG A 49 112.34 73.08 REMARK 500 20 TRP A 50 -165.85 -112.12 REMARK 500 20 SER A 51 99.17 -52.14 REMARK 500 20 ASN A 63 -52.35 -155.57 REMARK 500 20 ARG A 64 36.29 -142.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 64 0.10 SIDE_CHAIN REMARK 500 7 ARG A 70 0.07 SIDE_CHAIN REMARK 500 15 ARG A 32 0.07 SIDE_CHAIN REMARK 500 15 ARG A 53 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
DBREF 2JTF A 1 74 UNP Q96BT0 Q96BT0_HUMAN 1 74
SEQADV 2JTF GLY A -8 UNP Q96BT0 EXPRESSION TAG SEQADV 2JTF SER A -7 UNP Q96BT0 EXPRESSION TAG SEQADV 2JTF ARG A -6 UNP Q96BT0 EXPRESSION TAG SEQADV 2JTF ARG A -5 UNP Q96BT0 EXPRESSION TAG SEQADV 2JTF ALA A -4 UNP Q96BT0 EXPRESSION TAG SEQADV 2JTF SER A -3 UNP Q96BT0 EXPRESSION TAG SEQADV 2JTF VAL A -2 UNP Q96BT0 EXPRESSION TAG SEQADV 2JTF GLY A -1 UNP Q96BT0 EXPRESSION TAG SEQADV 2JTF SER A 0 UNP Q96BT0 EXPRESSION TAG
SEQRES 1 A 83 GLY SER ARG ARG ALA SER VAL GLY SER MET SER LYS LYS SEQRES 2 A 83 PRO PRO ASN ARG PRO GLY ILE THR PHE GLU ILE GLY ALA SEQRES 3 A 83 ARG LEU GLU ALA LEU ASP TYR LEU GLN LYS TRP TYR PRO SEQRES 4 A 83 SER ARG ILE GLU LYS ILE ASP TYR GLU GLU GLY LYS MET SEQRES 5 A 83 LEU VAL HIS PHE GLU ARG TRP SER HIS ARG TYR ASP GLU SEQRES 6 A 83 TRP ILE TYR TRP ASP SER ASN ARG LEU ARG PRO LEU GLU SEQRES 7 A 83 ARG PRO ALA LEU ARG
SHEET 1 A 5 ASP A 55 TYR A 59 0 SHEET 2 A 5 LYS A 42 HIS A 46 -1 N VAL A 45 O GLU A 56 SHEET 3 A 5 LYS A 27 ASP A 37 -1 N GLU A 34 O LEU A 44 SHEET 4 A 5 ARG A 18 ASP A 23 -1 N LEU A 19 O SER A 31 SHEET 5 A 5 LEU A 65 ARG A 66 -1 O ARG A 66 N GLU A 20
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000