10 20 30 40 50 60 70 80 2JSX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CHAPERONE 17-JUL-07 2JSX
TITLE SOLUTION STRUCTURE OF THE E. COLI TAT PROOFREADING TITLE 2 CHAPERONE PROTEIN NAPD
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN NAPD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: NAPD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE70
KEYWDS NAPD, TAT, PROOFREADING, PROTEIN, NMR, CYTOPLASM, CHAPERONE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.A.E.M.SPRONK,G.W.VUISTER,F.SARGENT
REVDAT 3 24-FEB-09 2JSX 1 VERSN REVDAT 2 16-OCT-07 2JSX 1 JRNL REVDAT 1 21-AUG-07 2JSX 0
JRNL AUTH J.MAILLARD,C.A.E.M.SPRONK,G.BUCHANAN,V.LYALL, JRNL AUTH 2 D.J.RICHARDSON,T.PALMER,G.W.VUISTER,F.SARGENT JRNL TITL STRUCTURAL DIVERSITY IN TWIN-ARGININE SIGNAL JRNL TITL 2 PEPTIDE-BINDING PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 15641 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17901208 JRNL DOI 10.1073/PNAS.0703967104
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH, WHATIF, YASARA REMARK 3 AUTHORS : CD SCHWIETERS, JJ KUSZEWSKI, N TJANDRA AND GM REMARK 3 CLORE (X-PLOR_NIH), G VRIEND (WHATIF), E. REMARK 3 KRIEGER, YASARA BIOSCIENCES (YASARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISTANCE RESTRAINTS WERE DERIVED REMARK 3 USING ATNOSCANDID AUTOMATED NOE ASSIGNMENT PROCEDURES. REMARK 3 RESTRAINTS WERE LOOSENED WITH 0.2ANGSTROM UPPER BOUND REMARK 3 CORRECTION AND USED TO CALCULATE 100 STRUCTURES USING REMARK 3 SIMULATED ANNEALING IN XPLOR-NIH, FOLLOWED BY REFINEMENT IN REMARK 3 EXPLICIT SOLVENT.
REMARK 4 REMARK 4 2JSX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB100249.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% REMARK 210 15N] NAPD, MM , MM , MM , 95% REMARK 210 H2O/5% D2O; 0.5 MM [U-100% REMARK 210 15N] NAPD, MM , MM , MM , 95% REMARK 210 H2O/5% D2O; 0.5 MM [U-10% 13C; REMARK 210 U-100% 15N] NAPD, MM , MM , MM REMARK 210 , 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 3D HNCACB, 3D REMARK 210 CBCA(CO)NH, 3D HBHA(CBCACO)NH, REMARK 210 3D HN(CA)HA, 3D 1H-15N NOESY, REMARK 210 3D 1H-13C NOESY, 3D 1H-13C REMARK 210 NOESY (AROMATIC, 3D (H)CCH- REMARK 210 TOCSY, 3D H(C)CH-TOCSY, 2D 1H- REMARK 210 13C HSQC CONSTANT TIME REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, ATNOSCANDID, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RESTRAINT ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 82 -51.67 69.82 REMARK 500 2 THR A 3 -47.21 74.70 REMARK 500 2 GLU A 51 -74.14 -66.18 REMARK 500 2 GLU A 80 -164.62 61.31 REMARK 500 2 GLU A 84 -73.30 -65.18 REMARK 500 2 PRO A 87 36.98 -78.69 REMARK 500 2 HIS A 94 92.83 76.50 REMARK 500 3 ASN A 4 87.41 63.70 REMARK 500 3 GLN A 79 90.21 66.18 REMARK 500 3 GLU A 80 -22.10 -158.46 REMARK 500 3 GLU A 84 -151.32 61.78 REMARK 500 3 HIS A 91 115.17 73.88 REMARK 500 4 THR A 3 50.95 -148.47 REMARK 500 4 GLN A 82 -178.80 62.87 REMARK 500 4 GLU A 85 94.61 67.66 REMARK 500 5 THR A 3 80.13 51.09 REMARK 500 5 ALA A 35 -64.37 -101.03 REMARK 500 5 GLN A 79 46.55 -94.27 REMARK 500 5 GLN A 82 161.63 69.83 REMARK 500 5 HIS A 94 110.90 74.70 REMARK 500 6 LEU A 70 -60.36 -94.16 REMARK 500 6 VAL A 75 73.45 -105.84 REMARK 500 6 TYR A 76 78.96 160.75 REMARK 500 6 GLN A 82 -158.11 60.90 REMARK 500 7 GLU A 80 -51.41 -133.08 REMARK 500 8 ASN A 4 77.75 -100.84 REMARK 500 8 ALA A 35 -74.10 -101.09 REMARK 500 8 TYR A 76 -88.61 65.04 REMARK 500 8 HIS A 77 98.53 -161.32 REMARK 500 8 GLU A 80 96.88 67.28 REMARK 500 9 TYR A 76 -72.28 -150.88 REMARK 500 9 ARG A 88 -82.40 -80.71 REMARK 500 10 PRO A 30 97.88 -69.40 REMARK 500 10 GLU A 51 -73.08 -68.99 REMARK 500 11 HIS A 2 -63.20 -90.23 REMARK 500 11 THR A 3 151.12 59.16 REMARK 500 11 ASN A 4 132.49 74.34 REMARK 500 11 LEU A 70 -60.62 -102.74 REMARK 500 12 GLN A 79 93.22 -69.86 REMARK 500 12 GLN A 82 -77.94 67.33 REMARK 500 12 GLU A 84 107.32 66.37 REMARK 500 12 PRO A 87 -75.32 -72.15 REMARK 500 12 SER A 89 144.76 75.25 REMARK 500 13 HIS A 2 145.31 74.01 REMARK 500 13 TYR A 76 -47.16 -130.84 REMARK 500 13 HIS A 77 -168.37 65.48 REMARK 500 13 GLN A 79 0.08 -67.53 REMARK 500 13 GLN A 82 48.24 -87.83 REMARK 500 13 HIS A 91 79.57 66.18 REMARK 500 13 HIS A 93 -39.76 167.37 REMARK 500 14 ALA A 35 -68.02 -120.26 REMARK 500 14 TYR A 76 -57.27 -178.69 REMARK 500 14 GLN A 79 -77.18 -125.08 REMARK 500 14 GLU A 80 -176.53 57.82 REMARK 500 14 ARG A 88 85.23 61.68 REMARK 500 14 HIS A 92 148.21 -172.68 REMARK 500 15 GLU A 51 -73.17 -80.16 REMARK 500 15 LEU A 70 -60.99 -102.19 REMARK 500 15 TYR A 76 125.00 -172.46 REMARK 500 15 GLU A 85 -60.17 -121.74 REMARK 500 15 SER A 89 -71.25 -140.05 REMARK 500 15 HIS A 91 -54.41 -153.69 REMARK 500 16 PRO A 30 101.73 -59.98 REMARK 500 16 LEU A 70 -60.40 -99.18 REMARK 500 16 ARG A 88 151.35 70.46 REMARK 500 16 HIS A 93 -170.95 65.22 REMARK 500 17 THR A 3 -66.00 -92.50 REMARK 500 17 GLU A 67 -35.18 -38.71 REMARK 500 17 GLU A 85 -67.92 -124.95 REMARK 500 17 HIS A 94 106.79 71.86 REMARK 500 18 HIS A 2 -70.43 -125.33 REMARK 500 18 TRP A 5 169.89 177.27 REMARK 500 18 PRO A 30 99.89 -61.08 REMARK 500 18 GLN A 79 -67.33 -90.55 REMARK 500 18 HIS A 91 76.42 -105.11 REMARK 500 18 HIS A 94 -71.87 69.47 REMARK 500 19 TYR A 76 -39.49 -160.63 REMARK 500 19 HIS A 77 159.33 75.76 REMARK 500 19 GLU A 80 -54.63 -130.46 REMARK 500 19 HIS A 90 102.39 73.46 REMARK 500 20 ALA A 35 -66.93 -99.61 REMARK 500 20 GLN A 82 -174.04 61.65 REMARK 500 20 HIS A 90 -152.89 177.30 REMARK 500 20 HIS A 92 174.46 74.99 REMARK 500 20 HIS A 93 -66.81 -96.08 REMARK 500 20 HIS A 94 13.88 -162.91 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15381 RELATED DB: BMRB
DBREF 2JSX A 1 87 UNP P0A9I5 NAPD_ECOLI 1 87
SEQADV 2JSX ARG A 88 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX SER A 89 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 90 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 91 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 92 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 93 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 94 UNP P0A9I5 EXPRESSION TAG SEQADV 2JSX HIS A 95 UNP P0A9I5 EXPRESSION TAG
SEQRES 1 A 95 MET HIS THR ASN TRP GLN VAL CYS SER LEU VAL VAL GLN SEQRES 2 A 95 ALA LYS SER GLU ARG ILE SER ASP ILE SER THR GLN LEU SEQRES 3 A 95 ASN ALA PHE PRO GLY CYS GLU VAL ALA VAL SER ASP ALA SEQRES 4 A 95 PRO SER GLY GLN LEU ILE VAL VAL VAL GLU ALA GLU ASP SEQRES 5 A 95 SER GLU THR LEU ILE GLN THR ILE GLU SER VAL ARG ASN SEQRES 6 A 95 VAL GLU GLY VAL LEU ALA VAL SER LEU VAL TYR HIS GLN SEQRES 7 A 95 GLN GLU GLU GLN GLY GLU GLU THR PRO ARG SER HIS HIS SEQRES 8 A 95 HIS HIS HIS HIS
HELIX 1 1 ARG A 18 ASN A 27 1 10 HELIX 2 2 ASP A 52 ARG A 64 1 13
SHEET 1 A 4 CYS A 32 ASP A 38 0 SHEET 2 A 4 GLN A 43 ALA A 50 -1 O ILE A 45 N VAL A 36 SHEET 3 A 4 GLN A 6 ALA A 14 -1 N VAL A 12 O LEU A 44 SHEET 4 A 4 VAL A 69 LEU A 74 -1 O ALA A 71 N GLN A 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000