10 20 30 40 50 60 70 80 2JST - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DE NOVO PROTEIN 12-JUL-07 2JST
TITLE FOUR-ALPHA-HELIX BUNDLE WITH DESIGNED ANESTHETIC BINDING TITLE 2 POCKETS II: HALOTHANE EFFECTS ON STRUCTURE AND DYNAMICS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOUR-ALPHA-HELIX BUNDLE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS FOUR-ALPHA-HELIX BUNDLE, ANESTHETIC BINDING, ALPHA HELIX, KEYWDS 2 HOMO DIMER, DE NOVO PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.CUI,V.BONDARENKO,D.MA,C.CANLAS,N.R.BRANDON,J.S.JOHANSSON, AUTHOR 2 P.TANG,Y.XU
REVDAT 2 24-FEB-09 2JST 1 VERSN REVDAT 1 27-MAY-08 2JST 0
JRNL AUTH T.CUI,V.BONDARENKO,D.MA,C.CANLAS,N.R.BRANDON, JRNL AUTH 2 J.S.JOHANSSON,Y.XU,P.TANG JRNL TITL FOUR-ALPHA-HELIX BUNDLE WITH DESIGNED ANESTHETIC JRNL TITL 2 BINDING POCKETS. PART II: HALOTHANE EFFECTS ON JRNL TITL 3 STRUCTURE AND DYNAMICS JRNL REF BIOPHYS.J. V. 94 4464 2008 JRNL REFN ISSN 0006-3495 JRNL PMID 18310239 JRNL DOI 10.1529/BIOPHYSJ.107.117853
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JST COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB100245.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] 4HB, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-1H REMARK 210 NOESY, 3D CBCA(CO)NH, 3D REMARK 210 HNCACB, 3D HNCO, 3D HN(CO)CA, REMARK 210 3D 1H-15N NOESY, 3D HCCH-COSY, REMARK 210 R1, R2, HETERONUCLEAR NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 700 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, NMRPIPE 2.4 REV REMARK 210 2006.095.11.35, SPARKY 3.110, REMARK 210 CYANA 2.1, AUTOASSIGN 2.2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 -74.58 -73.03 REMARK 500 1 LYS A 3 -37.76 -179.33 REMARK 500 1 LEU A 59 -77.50 -85.13 REMARK 500 1 LYS B 2 -74.56 -72.94 REMARK 500 1 LYS B 3 -37.69 -179.38 REMARK 500 1 LEU B 59 -77.55 -85.10 REMARK 500 2 LYS A 3 -64.20 -153.04 REMARK 500 2 LEU A 59 -61.46 -94.86 REMARK 500 2 LYS B 3 -64.53 -152.97 REMARK 500 2 LEU B 59 -60.93 -95.11 REMARK 500 3 LEU A 59 -76.99 -92.60 REMARK 500 3 LEU B 59 -77.05 -92.06 REMARK 500 4 LYS A 3 -74.13 -139.19 REMARK 500 4 LYS A 60 -89.24 -122.95 REMARK 500 4 LYS A 61 34.59 174.24 REMARK 500 4 LYS B 3 -74.21 -139.12 REMARK 500 4 LYS B 60 -89.21 -122.91 REMARK 500 4 LYS B 61 34.46 174.23 REMARK 500 5 LYS A 3 25.14 -150.50 REMARK 500 5 LEU A 4 -66.52 -146.26 REMARK 500 5 LYS A 60 -74.92 -122.77 REMARK 500 5 LYS A 61 122.89 -179.28 REMARK 500 5 LYS B 3 24.66 -150.92 REMARK 500 5 LEU B 4 -66.34 -146.20 REMARK 500 5 LYS B 60 -77.29 -120.95 REMARK 500 5 LYS B 61 123.26 -179.51 REMARK 500 6 LYS A 3 -55.58 -153.46 REMARK 500 6 LYS B 3 -56.41 -152.46 REMARK 500 7 LYS A 2 162.26 63.15 REMARK 500 7 LYS A 3 -42.54 -141.51 REMARK 500 7 LEU A 59 -76.72 -82.98 REMARK 500 7 LYS B 2 162.21 63.09 REMARK 500 7 LYS B 3 -42.35 -141.67 REMARK 500 7 LEU B 59 -76.61 -83.04 REMARK 500 8 LYS A 3 -39.65 -178.40 REMARK 500 8 LYS A 60 -75.28 -102.57 REMARK 500 8 LYS A 61 -34.40 -179.79 REMARK 500 8 LYS B 3 -39.76 -178.36 REMARK 500 8 LYS B 60 -75.98 -111.77 REMARK 500 8 LYS B 61 -33.81 179.04 REMARK 500 9 LYS A 3 49.48 -157.17 REMARK 500 9 LEU A 59 -73.65 -85.43 REMARK 500 9 LYS B 3 50.86 -158.01 REMARK 500 10 LYS A 3 -38.48 -179.33 REMARK 500 10 LYS A 60 -81.20 -124.45 REMARK 500 10 LYS A 61 -57.56 177.03 REMARK 500 10 LYS B 3 -38.29 -179.27 REMARK 500 10 LYS B 61 -69.21 -179.56 REMARK 500 11 LYS A 3 -70.37 -143.52 REMARK 500 11 LYS B 3 -70.84 -142.45 REMARK 500 11 LEU B 59 -74.99 -88.50 REMARK 500 12 LYS A 3 -40.72 -140.57 REMARK 500 12 LEU A 59 -77.54 -87.77 REMARK 500 12 LYS B 2 149.11 -173.23 REMARK 500 12 LYS B 3 -50.68 -171.65 REMARK 500 12 LEU B 59 -77.57 -87.97 REMARK 500 12 LYS B 61 69.07 -119.95 REMARK 500 13 LYS A 3 -52.32 180.00 REMARK 500 13 LEU A 4 -31.85 176.81 REMARK 500 13 LEU A 59 -78.80 -99.80 REMARK 500 13 LYS B 3 -52.42 -179.82 REMARK 500 13 LEU B 4 -32.05 176.98 REMARK 500 13 LEU B 59 -78.73 -100.06 REMARK 500 14 LEU A 4 -31.70 -176.45 REMARK 500 14 LEU A 59 -64.01 -100.87 REMARK 500 14 LYS A 61 -60.03 179.61 REMARK 500 14 LEU B 4 -31.76 -176.49 REMARK 500 14 LEU B 59 -64.43 -100.63 REMARK 500 14 LYS B 61 -60.28 179.61 REMARK 500 15 LYS A 2 -74.40 -114.27 REMARK 500 15 LYS A 3 -74.89 -145.06 REMARK 500 15 LEU A 59 -73.64 -84.03 REMARK 500 15 LYS B 2 -74.40 -114.24 REMARK 500 15 LYS B 3 -74.58 -146.06 REMARK 500 15 LEU B 59 -73.36 -83.93 REMARK 500 16 LYS A 3 -74.42 -137.32 REMARK 500 16 LYS B 3 -74.55 -137.55 REMARK 500 17 LYS A 3 -52.17 -179.37 REMARK 500 17 LEU A 4 -31.77 176.91 REMARK 500 17 LYS A 60 -79.09 -116.17 REMARK 500 17 LYS A 61 -35.63 178.01 REMARK 500 17 LYS B 3 -52.17 -179.39 REMARK 500 17 LEU B 4 -31.57 176.77 REMARK 500 17 LYS B 60 -79.28 -115.93 REMARK 500 17 LYS B 61 -34.57 178.00 REMARK 500 18 LYS A 2 179.00 59.37 REMARK 500 18 LYS A 3 -37.02 -173.86 REMARK 500 18 LEU A 59 -68.62 -93.38 REMARK 500 18 LYS A 60 -81.99 -119.70 REMARK 500 18 LYS A 61 -68.92 179.18 REMARK 500 18 LYS B 2 179.31 59.59 REMARK 500 18 LYS B 3 -37.11 -173.83 REMARK 500 18 LEU B 59 -67.69 -93.04 REMARK 500 18 LYS B 60 -81.49 -119.27 REMARK 500 18 LYS B 61 -69.84 178.49 REMARK 500 19 LYS A 2 158.25 63.90 REMARK 500 19 LYS A 3 -34.84 -179.65 REMARK 500 19 LYS A 60 -169.50 51.33 REMARK 500 19 LYS B 2 160.40 63.39 REMARK 500 19 LYS B 3 -37.22 -178.45 REMARK 500 19 LYS B 61 -38.46 -166.84 REMARK 500 20 LYS A 3 -39.99 -173.73 REMARK 500 20 LEU A 59 -77.19 -121.51 REMARK 500 20 LYS A 60 -174.47 70.30 REMARK 500 20 LYS B 3 -40.14 -173.95 REMARK 500 20 LEU B 59 -77.17 -121.30 REMARK 500 20 LYS B 60 -174.50 70.35 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HLT A 101
DBREF 2JST A 1 62 PDB 2JST 2JST 1 62 DBREF 2JST B 1 62 PDB 2JST 2JST 1 62
SEQRES 1 A 62 MET LYS LYS LEU ARG GLU GLU ALA ALA LYS LEU PHE GLU SEQRES 2 A 62 GLU TRP LYS LYS LEU ALA GLU GLU ALA ALA LYS LEU LEU SEQRES 3 A 62 GLU GLY GLY GLY GLY GLY GLY GLY GLY GLU LEU MET LYS SEQRES 4 A 62 LEU CYS GLU GLU ALA ALA LYS LYS ALA GLU GLU LEU PHE SEQRES 5 A 62 LYS LEU ALA GLU GLU ARG LEU LYS LYS LEU SEQRES 1 B 62 MET LYS LYS LEU ARG GLU GLU ALA ALA LYS LEU PHE GLU SEQRES 2 B 62 GLU TRP LYS LYS LEU ALA GLU GLU ALA ALA LYS LEU LEU SEQRES 3 B 62 GLU GLY GLY GLY GLY GLY GLY GLY GLY GLU LEU MET LYS SEQRES 4 B 62 LEU CYS GLU GLU ALA ALA LYS LYS ALA GLU GLU LEU PHE SEQRES 5 B 62 LYS LEU ALA GLU GLU ARG LEU LYS LYS LEU
HET HLT A 101 8
HETNAM HLT 2-BROMO-2-CHLORO-1,1,1-TRIFLUOROETHANE
FORMUL 3 HLT C2 H BR CL F3
HELIX 1 1 ARG A 5 GLU A 27 1 23 HELIX 2 2 GLY A 34 LYS A 60 1 27 HELIX 3 3 ARG B 5 GLU B 27 1 23 HELIX 4 4 GLY B 34 LYS B 60 1 27
SITE 1 AC1 7 GLU A 14 TRP A 15 LEU A 18 PHE B 12 SITE 2 AC1 7 GLU B 14 TRP B 15 LYS B 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000