10 20 30 40 50 60 70 80 2JSN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN TRANSPORT 10-JUL-07 2JSN
TITLE SOLUTION STRUCTURE OF THE ATYPICAL PDZ-LIKE DOMAIN OF TITLE 2 SYNBINDIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 19-106; COMPND 5 SYNONYM: SYNBINDIN, TRS23 HOMOLOG, HEMATOPOIETIC COMPND 6 STEM/PROGENITOR CELL PROTEIN 172; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRAPPC4, SBDN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28
KEYWDS PROTEIN INTERACTION, PROTEIN TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Y.FENG,S.FAN,W.GONG,B.XIA
REVDAT 2 17-FEB-09 2JSN 1 VERSN JRNL REVDAT 1 15-JUL-08 2JSN 0
JRNL AUTH S.FAN,Y.FENG,Z.WEI,B.XIA,W.GONG JRNL TITL SOLUTION STRUCTURE OF SYNBINDIN ATYPICAL PDZ JRNL TITL 2 DOMAIN AND INTERACTION WITH SYNDECAN-2 JRNL REF PROTEIN AND PEPTIDE LETTERS V. 16 189 2009 JRNL REFN ISSN 0929-8665 JRNL PMID 19200043
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SANE, AMBER REMARK 3 AUTHORS : DUGGAN, LEGGE, DYSON & WRIGHT (SANE), CASE, REMARK 3 DARDEN, CHEATHAM, III, SIMMERLING, WANG, DUKE, REMARK 3 LUO, AND KOLL (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JSN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB100239.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-1.5 MM [U-13C; U-15N] APD, REMARK 210 50 MM POTASSIUM PHOSPHATE, REMARK 210 0.01 % DSS, 0.01 % SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D CBCA(CO)NH, 3D REMARK 210 HNCACB, 3D HNCO, 3D HCCH- REMARK 210 TOCSY, 3D HBHA(CO)NH, 2D REMARK 210 CB(CGCD)HD, 3D HN(CA)CO, 3D 1H REMARK 210 -15N TOCSY, 3D 1H-15N NOESY, REMARK 210 3D 1H-13C NOESY, 3D HCCH-COSY, REMARK 210 3D CCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, NMRPIPE, NMRVIEW, REMARK 210 CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 3 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 9 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 11 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 18 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 19 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 20 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 14 150.69 -49.21 REMARK 500 1 ASP A 45 -38.82 -152.30 REMARK 500 1 ILE A 47 31.95 -70.29 REMARK 500 1 ARG A 48 -42.24 -136.77 REMARK 500 1 LEU A 54 -35.17 -130.12 REMARK 500 1 ASN A 57 24.20 42.92 REMARK 500 2 HIS A 5 17.56 54.17 REMARK 500 2 PRO A 14 -0.67 -59.59 REMARK 500 2 ARG A 15 -9.53 -56.81 REMARK 500 2 LEU A 26 -75.54 48.04 REMARK 500 2 ASP A 27 -28.34 -166.65 REMARK 500 2 ARG A 64 25.49 -149.42 REMARK 500 2 SER A 95 36.64 -78.67 REMARK 500 3 HIS A 4 -37.39 65.79 REMARK 500 3 LEU A 26 -91.39 37.70 REMARK 500 3 ASP A 27 -38.79 -160.58 REMARK 500 3 ARG A 44 168.49 62.28 REMARK 500 3 ASN A 57 27.55 40.15 REMARK 500 4 ASN A 57 28.84 49.60 REMARK 500 5 ASP A 10 -21.82 -146.97 REMARK 500 5 GLU A 35 6.86 59.36 REMARK 500 5 ARG A 44 -33.54 64.31 REMARK 500 5 ASN A 57 34.58 36.83 REMARK 500 5 ARG A 64 23.16 -145.23 REMARK 500 6 HIS A 4 -46.02 66.87 REMARK 500 6 ALA A 18 166.64 72.82 REMARK 500 6 LEU A 26 -123.59 44.52 REMARK 500 6 ASP A 27 43.85 -153.55 REMARK 500 6 ILE A 47 54.89 -141.83 REMARK 500 6 PRO A 91 -170.35 -55.24 REMARK 500 7 TYR A 12 -13.97 -158.36 REMARK 500 7 ARG A 15 112.07 56.82 REMARK 500 7 LEU A 28 13.90 -160.17 REMARK 500 7 SER A 95 10.16 -158.16 REMARK 500 8 ASP A 10 -31.87 -146.22 REMARK 500 8 TYR A 12 -47.05 -144.63 REMARK 500 8 GLU A 19 -155.80 47.98 REMARK 500 8 ILE A 47 -38.12 -153.04 REMARK 500 9 HIS A 6 90.10 -68.29 REMARK 500 9 HIS A 8 12.57 -66.78 REMARK 500 9 ASP A 10 -6.22 -58.99 REMARK 500 9 ALA A 13 -25.35 -143.00 REMARK 500 9 ILE A 47 -25.84 -146.31 REMARK 500 9 ASN A 57 26.25 41.69 REMARK 500 10 HIS A 3 35.51 -74.92 REMARK 500 10 HIS A 7 46.55 -83.00 REMARK 500 10 HIS A 8 -53.13 -153.54 REMARK 500 10 ASP A 10 -33.84 -134.45 REMARK 500 10 TYR A 12 101.80 64.05 REMARK 500 10 ARG A 15 46.28 -148.69 REMARK 500 10 GLU A 35 15.55 55.53 REMARK 500 11 HIS A 6 172.11 67.11 REMARK 500 11 ALA A 16 -37.92 -139.85 REMARK 500 11 GLU A 35 16.10 55.69 REMARK 500 11 ASP A 45 -37.99 -153.20 REMARK 500 12 PRO A 14 -6.01 -56.41 REMARK 500 12 ASN A 57 29.13 49.93 REMARK 500 13 HIS A 8 -32.86 -157.00 REMARK 500 13 ARG A 15 41.65 -109.14 REMARK 500 13 ARG A 44 -47.13 67.09 REMARK 500 13 LEU A 54 -41.50 -132.62 REMARK 500 14 ALA A 16 19.74 -145.46 REMARK 500 14 ILE A 47 33.85 -70.59 REMARK 500 14 ASN A 57 28.20 49.56 REMARK 500 15 HIS A 4 -168.57 54.91 REMARK 500 15 ASP A 10 -16.65 54.81 REMARK 500 15 GLU A 35 16.43 56.50 REMARK 500 15 ARG A 36 -169.70 -126.38 REMARK 500 15 ASP A 45 -25.15 64.44 REMARK 500 15 THR A 94 27.82 -141.43 REMARK 500 16 LEU A 26 -58.02 -161.54 REMARK 500 16 LEU A 28 31.56 -145.32 REMARK 500 16 GLN A 43 38.08 -157.38 REMARK 500 16 ILE A 47 26.53 -144.25 REMARK 500 16 LEU A 93 -36.58 64.14 REMARK 500 17 HIS A 4 33.77 -80.09 REMARK 500 17 ALA A 13 -38.51 -148.23 REMARK 500 17 ARG A 15 45.09 -82.99 REMARK 500 17 ARG A 48 20.27 -75.33 REMARK 500 17 ASN A 57 21.58 47.27 REMARK 500 17 PRO A 91 157.34 -49.94 REMARK 500 18 ARG A 92 -174.65 55.90 REMARK 500 19 ALA A 16 -42.55 -152.47 REMARK 500 19 GLU A 35 17.57 55.23 REMARK 500 19 ASP A 45 -26.40 62.74 REMARK 500 19 PRO A 91 160.64 -48.49 REMARK 500 20 ALA A 13 -21.92 -145.83 REMARK 500 20 ALA A 16 -82.53 -166.15 REMARK 500 20 GLU A 17 51.62 35.84 REMARK 500 20 GLU A 35 0.43 59.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 15 0.11 SIDE_CHAIN REMARK 500 6 ARG A 90 0.09 SIDE_CHAIN REMARK 500 7 ARG A 36 0.08 SIDE_CHAIN REMARK 500 12 ARG A 36 0.12 SIDE_CHAIN REMARK 500 15 ARG A 92 0.08 SIDE_CHAIN REMARK 500 20 ARG A 64 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15370 RELATED DB: BMRB
DBREF 2JSN A 9 96 UNP Q9Y296 TPPC4_HUMAN 19 106
SEQADV 2JSN MET A 1 UNP Q9Y296 EXPRESSION TAG SEQADV 2JSN GLY A 2 UNP Q9Y296 EXPRESSION TAG SEQADV 2JSN HIS A 3 UNP Q9Y296 EXPRESSION TAG SEQADV 2JSN HIS A 4 UNP Q9Y296 EXPRESSION TAG SEQADV 2JSN HIS A 5 UNP Q9Y296 EXPRESSION TAG SEQADV 2JSN HIS A 6 UNP Q9Y296 EXPRESSION TAG SEQADV 2JSN HIS A 7 UNP Q9Y296 EXPRESSION TAG SEQADV 2JSN HIS A 8 UNP Q9Y296 EXPRESSION TAG
SEQRES 1 A 96 MET GLY HIS HIS HIS HIS HIS HIS LEU ASP SER TYR ALA SEQRES 2 A 96 PRO ARG ALA GLU ALA GLU LYS THR PHE SER TYR PRO LEU SEQRES 3 A 96 ASP LEU LEU LEU LYS LEU HIS ASP GLU ARG VAL LEU VAL SEQRES 4 A 96 ALA PHE GLY GLN ARG ASP GLY ILE ARG VAL GLY HIS ALA SEQRES 5 A 96 VAL LEU ALA ILE ASN GLY MET ASP VAL ASN GLY ARG TYR SEQRES 6 A 96 THR ALA ASP GLY LYS GLU VAL LEU GLU TYR LEU GLY ASN SEQRES 7 A 96 PRO ALA ASN TYR PRO VAL SER ILE ARG PHE GLY ARG PRO SEQRES 8 A 96 ARG LEU THR SER ASN
HELIX 1 1 GLU A 71 ASN A 78 1 8 HELIX 2 2 PRO A 79 TYR A 82 5 4
SHEET 1 A 4 LYS A 20 PHE A 22 0 SHEET 2 A 4 VAL A 84 GLY A 89 -1 O ILE A 86 N LYS A 20 SHEET 3 A 4 ALA A 52 ILE A 56 -1 N ALA A 52 O GLY A 89 SHEET 4 A 4 MET A 59 ASP A 60 -1 O MET A 59 N ILE A 56 SHEET 1 B 2 LEU A 29 HIS A 33 0 SHEET 2 B 2 ARG A 36 PHE A 41 -1 O LEU A 38 N LYS A 31
CISPEP 1 TYR A 24 PRO A 25 1 -10.07 CISPEP 2 TYR A 24 PRO A 25 2 -5.06 CISPEP 3 TYR A 24 PRO A 25 3 -0.68 CISPEP 4 TYR A 24 PRO A 25 4 -9.61 CISPEP 5 TYR A 24 PRO A 25 5 -6.65 CISPEP 6 TYR A 24 PRO A 25 6 -7.87 CISPEP 7 TYR A 24 PRO A 25 7 -10.42 CISPEP 8 TYR A 24 PRO A 25 8 -10.16 CISPEP 9 TYR A 24 PRO A 25 9 -5.19 CISPEP 10 TYR A 24 PRO A 25 10 -8.81 CISPEP 11 TYR A 24 PRO A 25 11 -6.83 CISPEP 12 TYR A 24 PRO A 25 12 6.36 CISPEP 13 TYR A 24 PRO A 25 13 -10.30 CISPEP 14 TYR A 24 PRO A 25 14 5.10 CISPEP 15 TYR A 24 PRO A 25 15 -10.24 CISPEP 16 TYR A 24 PRO A 25 16 -10.13 CISPEP 17 TYR A 24 PRO A 25 17 -5.40 CISPEP 18 TYR A 24 PRO A 25 18 -10.44 CISPEP 19 TYR A 24 PRO A 25 19 -10.30 CISPEP 20 TYR A 24 PRO A 25 20 -7.51
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000