2JRZ - Header Asymmetric Unit

HEADER OXIDOREDUCTASE 29-JUN-07 2JRZ

TITLE SOLUTION STRUCTURE OF THE BRIGHT/ARID DOMAIN FROM THE HUMAN TITLE 2 JARID1C PROTEIN.

COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEMETHYLASE JARID1C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRIGHT, ARID DOMAIN; COMPND 5 SYNONYM: JUMONJI/ARID DOMAIN-CONTAINING PROTEIN 1C, PROTEIN COMPND 6 SMCX, PROTEIN XE169; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JARID1C, DXS1272E, SMCX, XE169; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4

KEYWDS JARID1C, BRIGHT/ARID DOMAIN, HELICAL, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, OXIDOREDUCTASE

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR C.KOEHLER,S.BISHOP,E.F.DOWLER,A.DIEHL,P.SCHMIEDER,M.LEIDERT, AUTHOR 2 M.SUNDSTROM,C.H.ARROWSMITH,J.WIEGELT,A.EDWARDS,H.OSCHKINAT, AUTHOR 3 L.J.BALL,STRUCTURAL GENOMICS CONSORTIUM (SGC)

REVDAT 4 18-AUG-09 2JRZ 1 JRNL REVDAT 3 24-FEB-09 2JRZ 1 VERSN REVDAT 2 11-SEP-07 2JRZ 1 AUTHOR REVDAT 1 10-JUL-07 2JRZ 0

JRNL AUTH C.KOEHLER,S.BISHOP,E.F.DOWLER,P.SCHMIEDER,A.DIEHL, JRNL AUTH 2 H.OSCHKINAT,L.J.BALL JRNL TITL BACKBONE AND SIDECHAIN 1H, 13C AND 15N RESONANCE JRNL TITL 2 ASSIGNMENTS OF THE BRIGHT/ARID DOMAIN FROM THE JRNL TITL 3 HUMAN JARID1C (SMCX) PROTEIN. JRNL REF BIOMOL.NMR ASSIGN. V. 2 9 2008 JRNL REFN ISSN 1874-2718 JRNL PMID 19636912 JRNL DOI 10.1007/S12104-007-9071-7

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.14 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2JRZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB100215.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] JARID1C, 50 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 5 MM DTT, 90% H2O/10% REMARK 210 D2O; 1 MM [U-13C; U-15N] REMARK 210 JARID1C, 50 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 5 MM DTT, 100% D2O; 1 MM [U- REMARK 210 100% 15N] JARID1C, 50 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 5 MM DTT, 100% D2O; 1 MM [U- REMARK 210 13C; U-15N] JARID1C, 50 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 0.02 % SODIUM AZIDE, REMARK 210 5 MM DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D CBCANH; 2D REMARK 210 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCACO; 3D REMARK 210 HBHA(CO)NH; 3D H(CCCO)NH- REMARK 210 TOCSY; (H)CC(CO)NH-TOCSY; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6 AND 3.1, SPARKY REMARK 210 3.10, CYANA 2,0, X-PLOR_NIH REMARK 210 2.14, CNS, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 10 5.62 50.89 REMARK 500 1 PRO A 33 -170.87 -66.45 REMARK 500 1 LEU A 40 90.91 -68.69 REMARK 500 1 LYS A 77 17.84 48.15 REMARK 500 1 LEU A 103 119.45 -169.56 REMARK 500 1 ARG A 108 -63.11 -93.68 REMARK 500 2 ARG A 10 4.04 58.60 REMARK 500 2 GLN A 26 41.30 -79.75 REMARK 500 2 ILE A 90 -50.61 -121.17 REMARK 500 2 TYR A 97 -70.39 -64.52 REMARK 500 2 LEU A 103 118.76 -176.83 REMARK 500 3 ARG A 10 6.46 55.88 REMARK 500 3 ARG A 37 9.73 80.77 REMARK 500 3 LYS A 77 15.48 58.96 REMARK 500 3 LEU A 103 137.73 -176.34 REMARK 500 3 PHE A 110 -73.14 -39.39 REMARK 500 3 LYS A 115 79.95 -113.20 REMARK 500 4 ASN A 72 4.31 81.36 REMARK 500 4 TYR A 97 -70.63 -61.95 REMARK 500 4 LEU A 103 134.94 -174.82 REMARK 500 4 PRO A 109 -16.95 -48.69 REMARK 500 4 LYS A 115 -79.72 -81.58 REMARK 500 4 ASP A 116 -49.33 163.30 REMARK 500 5 ARG A 10 4.84 59.28 REMARK 500 5 LEU A 40 91.01 -67.34 REMARK 500 5 LYS A 77 17.18 48.43 REMARK 500 5 ASN A 102 -60.68 -99.29 REMARK 500 5 PRO A 109 24.04 -73.13 REMARK 500 6 ARG A 10 6.14 59.03 REMARK 500 6 PRO A 33 -171.33 -64.02 REMARK 500 6 LEU A 40 93.03 -67.85 REMARK 500 6 ASN A 72 9.71 82.85 REMARK 500 6 LYS A 77 -23.90 69.84 REMARK 500 6 ILE A 90 -56.23 -123.52 REMARK 500 6 ASN A 102 -61.37 -91.36 REMARK 500 6 LEU A 103 130.76 -172.74 REMARK 500 6 ASP A 116 -56.56 74.37 REMARK 500 7 ARG A 10 4.71 57.39 REMARK 500 7 ARG A 37 16.36 81.23 REMARK 500 7 ILE A 90 -54.08 -123.96 REMARK 500 7 LEU A 103 122.93 -175.56 REMARK 500 7 PRO A 109 -36.59 -37.63 REMARK 500 8 ARG A 10 5.28 57.42 REMARK 500 8 LEU A 40 90.71 -68.83 REMARK 500 8 PRO A 75 -161.28 -71.75 REMARK 500 8 LEU A 103 119.91 -167.08 REMARK 500 8 ASP A 116 106.39 72.47 REMARK 500 9 ALA A 7 -62.71 -28.11 REMARK 500 9 ARG A 10 3.73 58.81 REMARK 500 9 ARG A 37 -2.21 75.63 REMARK 500 9 LEU A 40 98.91 -69.64 REMARK 500 9 ASN A 72 30.23 72.75 REMARK 500 9 LYS A 77 -0.77 65.78 REMARK 500 9 TYR A 97 -70.49 -53.46 REMARK 500 9 ASP A 116 -77.79 -60.49 REMARK 500 10 ARG A 10 5.63 59.37 REMARK 500 10 PRO A 75 -176.97 -60.11 REMARK 500 10 ILE A 90 -55.01 -123.10 REMARK 500 10 TYR A 97 -70.17 -66.15 REMARK 500 10 ASN A 102 -61.11 -98.99 REMARK 500 10 LEU A 103 124.42 -174.53 REMARK 500 11 ASN A 102 -60.54 -100.35 REMARK 500 11 LEU A 103 118.70 -160.86 REMARK 500 11 LYS A 115 77.12 -115.56 REMARK 500 12 LEU A 40 91.69 -67.05 REMARK 500 12 LYS A 77 13.28 49.94 REMARK 500 12 LEU A 103 129.44 -170.27 REMARK 500 12 ASP A 116 -55.47 75.79 REMARK 500 13 PRO A 75 171.13 -57.98 REMARK 500 13 LYS A 77 -25.19 72.92 REMARK 500 13 ASN A 102 -62.13 -97.33 REMARK 500 13 LEU A 103 119.17 -173.60 REMARK 500 14 ARG A 10 6.12 55.89 REMARK 500 14 GLN A 26 30.03 -76.94 REMARK 500 14 PRO A 33 -178.66 -67.23 REMARK 500 14 LEU A 40 99.38 -67.97 REMARK 500 14 LEU A 103 119.73 -162.31 REMARK 500 14 ASP A 116 -61.09 73.45 REMARK 500 15 ARG A 37 2.83 81.42 REMARK 500 15 ASN A 102 -61.87 -99.89 REMARK 500 15 PRO A 109 -32.00 -39.52 REMARK 500 16 ARG A 10 4.99 59.56 REMARK 500 16 LEU A 30 93.62 -65.79 REMARK 500 16 LEU A 40 97.94 -69.54 REMARK 500 16 ASN A 102 -61.80 -99.53 REMARK 500 16 LEU A 103 133.81 -176.57 REMARK 500 17 ALA A 7 -72.44 -63.08 REMARK 500 17 ARG A 10 3.61 59.34 REMARK 500 17 GLN A 26 32.69 -82.65 REMARK 500 17 LEU A 30 96.75 -68.17 REMARK 500 17 ARG A 37 11.28 80.25 REMARK 500 17 LEU A 40 96.41 -68.56 REMARK 500 17 TYR A 43 -71.64 -56.15 REMARK 500 17 ASN A 72 30.45 70.00 REMARK 500 17 ILE A 90 -51.95 -121.27 REMARK 500 17 ASN A 102 -61.43 -100.34 REMARK 500 17 LYS A 115 61.44 -105.82 REMARK 500 18 PRO A 75 -152.27 -66.71 REMARK 500 18 ASN A 102 -62.09 -100.36 REMARK 500 18 LEU A 103 142.59 -179.29 REMARK 500 18 PRO A 109 -7.51 -59.24 REMARK 500 18 ASP A 116 102.82 62.31 REMARK 500 19 ALA A 7 -72.07 -67.06 REMARK 500 19 GLN A 26 41.45 -79.76 REMARK 500 19 LEU A 40 94.62 -67.29 REMARK 500 19 PRO A 75 -77.72 -52.10 REMARK 500 19 LYS A 77 -2.31 68.08 REMARK 500 20 PRO A 33 -174.54 -68.65 REMARK 500 20 LEU A 40 90.25 -68.86 REMARK 500 20 PRO A 75 -163.33 -66.56 REMARK 500 20 LYS A 77 17.25 49.90 REMARK 500 20 PRO A 109 7.49 -65.22 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15348 RELATED DB: BMRB

REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 AUTHOR STATED THAT Q175 IN UNP ENTRY P41229 IS REMARK 999 NOT PRESENT IN THIS PROTEIN, AND THE PROTEIN REMARK 999 IS AN ISOFORM OF P41229.

DBREF 2JRZ A 3 117 UNP P41229 JAD1C_HUMAN 73 188

SEQADV 2JRZ SER A 1 UNP P41229 CLONING ARTIFACT SEQADV 2JRZ MET A 2 UNP P41229 CLONING ARTIFACT SEQADV 2JRZ A UNP P41229 GLN 175 SEE REMARK 999

SEQRES 1 A 117 SER MET ASN GLU LEU GLU ALA GLN THR ARG VAL LYS LEU SEQRES 2 A 117 ASN TYR LEU ASP GLN ILE ALA LYS PHE TRP GLU ILE GLN SEQRES 3 A 117 GLY SER SER LEU LYS ILE PRO ASN VAL GLU ARG ARG ILE SEQRES 4 A 117 LEU ASP LEU TYR SER LEU SER LYS ILE VAL VAL GLU GLU SEQRES 5 A 117 GLY GLY TYR GLU ALA ILE CYS LYS ASP ARG ARG TRP ALA SEQRES 6 A 117 ARG VAL ALA GLN ARG LEU ASN TYR PRO PRO GLY LYS ASN SEQRES 7 A 117 ILE GLY SER LEU LEU ARG SER HIS TYR GLU ARG ILE VAL SEQRES 8 A 117 TYR PRO TYR GLU MET TYR GLN SER GLY ALA ASN LEU VAL SEQRES 9 A 117 CYS ASN THR ARG PRO PHE ASP ASN GLU GLU LYS ASP LYS

HELIX 1 1 MET A 2 ALA A 7 1 6 HELIX 2 2 VAL A 11 ILE A 25 1 15 HELIX 3 3 ASP A 41 GLY A 53 1 13 HELIX 4 4 GLY A 54 ASP A 61 1 8 HELIX 5 5 ARG A 63 LEU A 71 1 9 HELIX 6 6 ASN A 78 ILE A 90 1 13 HELIX 7 7 VAL A 91 LEU A 103 1 13 HELIX 8 8 PRO A 109 LYS A 115 1 7

SHEET 1 A 2 ASN A 34 VAL A 35 0 SHEET 2 A 2 ARG A 38 ILE A 39 -1 O ARG A 38 N VAL A 35

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000