10 20 30 40 50 60 70 80 2JRV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 29-JUN-07 2JRV
TITLE THE THIRD DIMENSIONAL STRUCTURE OF MAB198-BOUND PEP.1 FOR TITLE 2 AUTOIMMUNE MYASTHENIA GRAVIS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE PEP.1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SOLID PHASE PEPTIDE SYNTHESIS
KEYWDS ACETYLCHOLINE RECEPTOR, PHAGE DISPLAY, IMMUNE SYSTEM
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.H.JUNG,H.J.YI,S.K.LEE,J.Y.LEE,H.J.JUNG,S.T.YANG,Y.-J.EU, AUTHOR 2 S.-H.IM,J.I.KIM
REVDAT 2 24-FEB-09 2JRV 1 VERSN REVDAT 1 01-JUL-08 2JRV 0
JRNL AUTH H.H.JUNG,H.J.YI,S.K.LEE,J.Y.LEE,H.J.JUNG,S.T.YANG, JRNL AUTH 2 Y.-J.EU,S.-H.IM,J.I.KIM JRNL TITL STRUCTURAL ANALYSIS OF IMMUNOTHERAPEUTIC PEPTIDES JRNL TITL 2 FOR AUTOIMMUNE MYASTHENIA GRAVIS JRNL REF BIOCHEMISTRY V. 46 14987 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 18052043 JRNL DOI 10.1021/BI701298B
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JRV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB100211.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM PROTEIN; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY, 2D 1H-1H REMARK 210 COSY, 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR, ANSIG 3.3 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 2 -12.85 -172.72 REMARK 500 1 GLU A 6 59.87 -60.10 REMARK 500 1 ASN A 7 38.38 -161.15 REMARK 500 1 TYR A 8 -75.50 -161.37 REMARK 500 1 PHE A 9 -149.20 -79.41 REMARK 500 2 MET A 2 -45.18 69.29 REMARK 500 2 ASN A 7 44.63 -161.11 REMARK 500 2 TYR A 8 -75.74 -160.11 REMARK 500 2 PHE A 9 -155.82 -84.56 REMARK 500 3 ASN A 7 48.99 -161.30 REMARK 500 3 TYR A 8 -56.30 -154.87 REMARK 500 3 PHE A 9 -149.37 -103.60 REMARK 500 4 MET A 2 47.72 -70.09 REMARK 500 4 ASN A 7 47.17 -161.05 REMARK 500 4 TYR A 8 -47.93 -160.20 REMARK 500 4 PHE A 9 -162.90 -106.29 REMARK 500 4 GLU A 11 45.01 -86.30 REMARK 500 4 PRO A 13 38.44 -95.05 REMARK 500 5 MET A 2 114.27 56.86 REMARK 500 5 GLU A 6 61.14 18.87 REMARK 500 5 ASN A 7 39.11 -160.03 REMARK 500 5 TYR A 8 -53.92 -161.34 REMARK 500 6 MET A 2 -30.29 -133.32 REMARK 500 6 GLU A 6 69.03 -68.37 REMARK 500 6 ASN A 7 43.07 -157.77 REMARK 500 6 TYR A 8 -75.44 -161.00 REMARK 500 6 PHE A 9 -161.74 -107.97 REMARK 500 6 ARG A 12 -52.64 -161.56 REMARK 500 6 PRO A 13 49.23 -87.55 REMARK 500 7 MET A 2 -116.53 -131.88 REMARK 500 7 GLU A 6 56.78 32.79 REMARK 500 7 ASN A 7 36.78 -161.02 REMARK 500 7 TYR A 8 -89.99 -161.80 REMARK 500 7 PHE A 9 -146.12 -79.45 REMARK 500 8 MET A 2 69.86 -155.23 REMARK 500 8 GLU A 6 69.56 -56.43 REMARK 500 8 ASN A 7 46.91 -161.98 REMARK 500 8 TYR A 8 -86.30 -160.86 REMARK 500 8 PHE A 9 -153.42 -79.01 REMARK 500 8 PRO A 13 75.06 -67.89 REMARK 500 9 MET A 2 -167.15 -61.41 REMARK 500 9 THR A 3 -166.98 -120.84 REMARK 500 9 GLU A 6 62.88 21.92 REMARK 500 9 ASN A 7 44.20 -161.50 REMARK 500 9 TYR A 8 -96.66 -160.63 REMARK 500 9 PHE A 9 -148.21 -79.85 REMARK 500 9 GLU A 11 49.06 -77.18 REMARK 500 10 MET A 2 -90.75 -121.56 REMARK 500 10 GLU A 6 45.71 33.14 REMARK 500 10 ASN A 7 40.92 -161.77 REMARK 500 10 TYR A 8 -72.54 -160.50 REMARK 500 10 PHE A 9 -150.41 -78.95 REMARK 500 10 PRO A 13 71.53 -69.67 REMARK 500 11 MET A 2 -149.62 43.56 REMARK 500 11 GLU A 6 49.67 -65.94 REMARK 500 11 ASN A 7 45.29 -161.19 REMARK 500 11 TYR A 8 -76.75 -160.45 REMARK 500 11 PHE A 9 -149.23 -79.56 REMARK 500 12 MET A 2 -150.65 -90.24 REMARK 500 12 GLU A 6 68.25 -60.50 REMARK 500 12 ASN A 7 49.63 -161.17 REMARK 500 12 TYR A 8 -74.78 -157.53 REMARK 500 12 PHE A 9 -147.83 -79.18 REMARK 500 12 PRO A 13 62.09 -66.44 REMARK 500 13 MET A 2 -73.00 -63.71 REMARK 500 13 GLU A 6 55.13 -60.90 REMARK 500 13 ASN A 7 51.79 -161.42 REMARK 500 13 TYR A 8 -38.50 -160.34 REMARK 500 13 PHE A 9 -155.50 -122.81 REMARK 500 13 GLU A 11 48.49 -78.20 REMARK 500 13 TYR A 14 55.11 -160.59 REMARK 500 14 MET A 2 -170.86 -55.10 REMARK 500 14 PRO A 5 -158.50 -76.41 REMARK 500 14 GLU A 6 57.95 -60.64 REMARK 500 14 ASN A 7 35.72 -161.33 REMARK 500 14 TYR A 8 -85.03 -160.83 REMARK 500 14 GLU A 11 42.99 -78.61 REMARK 500 15 GLU A 6 62.51 -66.55 REMARK 500 15 ASN A 7 61.26 -160.18 REMARK 500 15 TYR A 8 -80.80 -156.84 REMARK 500 15 PHE A 9 -153.51 -93.59 REMARK 500 15 GLU A 11 37.12 -80.98 REMARK 500 15 ARG A 12 -57.21 -125.76 REMARK 500 15 PRO A 13 37.75 -81.50 REMARK 500 16 GLU A 6 60.59 -60.59 REMARK 500 16 ASN A 7 51.50 -161.52 REMARK 500 16 TYR A 8 -56.61 -149.21 REMARK 500 16 PHE A 9 -156.38 -107.29 REMARK 500 16 GLU A 11 29.96 -78.89 REMARK 500 16 ARG A 12 -54.17 -162.44 REMARK 500 16 PRO A 13 37.78 -83.71 REMARK 500 17 GLU A 6 49.71 -61.40 REMARK 500 17 ASN A 7 37.62 -141.02 REMARK 500 17 TYR A 8 -47.15 -161.47 REMARK 500 17 ARG A 12 -59.05 -160.40 REMARK 500 17 PRO A 13 36.67 -67.71 REMARK 500 18 MET A 2 -79.80 -159.26 REMARK 500 18 GLU A 6 63.68 33.06 REMARK 500 18 ASN A 7 31.14 -155.88 REMARK 500 18 TYR A 8 -61.67 -161.53 REMARK 500 18 PHE A 9 -158.46 -131.01 REMARK 500 18 GLU A 11 40.28 -78.13 REMARK 500 19 MET A 2 114.88 54.25 REMARK 500 19 GLU A 6 68.20 -56.71 REMARK 500 19 ASN A 7 34.01 -159.76 REMARK 500 19 TYR A 8 -42.51 -160.92 REMARK 500 19 GLU A 11 44.94 -86.15 REMARK 500 19 ARG A 12 -91.42 -135.01 REMARK 500 19 PRO A 13 40.96 -78.85 REMARK 500 20 MET A 2 -155.30 -149.99 REMARK 500 20 GLU A 6 52.37 30.98 REMARK 500 20 ASN A 7 45.68 -160.45 REMARK 500 20 TYR A 8 -41.27 -153.63 REMARK 500 20 GLU A 11 38.61 -78.35 REMARK 500 20 PRO A 13 58.96 -68.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 12 0.25 SIDE_CHAIN REMARK 500 2 ARG A 12 0.14 SIDE_CHAIN REMARK 500 3 ARG A 12 0.31 SIDE_CHAIN REMARK 500 4 ARG A 12 0.28 SIDE_CHAIN REMARK 500 5 ARG A 12 0.32 SIDE_CHAIN REMARK 500 6 ARG A 12 0.16 SIDE_CHAIN REMARK 500 7 ARG A 12 0.31 SIDE_CHAIN REMARK 500 8 ARG A 12 0.15 SIDE_CHAIN REMARK 500 9 ARG A 12 0.31 SIDE_CHAIN REMARK 500 10 ARG A 12 0.30 SIDE_CHAIN REMARK 500 11 ARG A 12 0.26 SIDE_CHAIN REMARK 500 12 ARG A 12 0.27 SIDE_CHAIN REMARK 500 13 ARG A 12 0.26 SIDE_CHAIN REMARK 500 14 ARG A 12 0.22 SIDE_CHAIN REMARK 500 15 ARG A 12 0.28 SIDE_CHAIN REMARK 500 16 ARG A 12 0.31 SIDE_CHAIN REMARK 500 17 ARG A 12 0.15 SIDE_CHAIN REMARK 500 18 ARG A 12 0.27 SIDE_CHAIN REMARK 500 19 ARG A 12 0.16 SIDE_CHAIN REMARK 500 20 ARG A 12 0.30 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JRW RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CYCLIC EXTENDED PEP.1
DBREF 2JRV A 1 15 PDB 2JRV 2JRV 1 15
SEQRES 1 A 15 PRO MET THR LEU PRO GLU ASN TYR PHE SER GLU ARG PRO SEQRES 2 A 15 TYR HIS
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000