2JR7 - Header Asymmetric Unit

HEADER METAL BINDING PROTEIN 21-JUN-07 2JR7

TITLE SOLUTION STRUCTURE OF HUMAN DESR1

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DPH3 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CSL-TYPE ZINC FINGER-CONTAINING PROTEIN 2, DELGEF- COMPND 5 INTERACTING PROTEIN 1, DELGIP1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPH3, DESR1, ZCSL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET22B (+)

KEYWDS DESR1, CSL ZINC FINGER, METAL BINDING PROTEIN

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR F.WU,J.WU,Y.SHI

REVDAT 2 24-FEB-09 2JR7 1 VERSN REVDAT 1 25-MAR-08 2JR7 0

JRNL AUTH F.WU,J.ZHANG,J.SUN,H.HUANG,P.JI,W.CHU,M.YU,F.YANG, JRNL AUTH 2 Z.WU,J.WU,Y.SHI JRNL TITL SOLUTION STRUCTURE OF HUMAN DESR1, A CSL JRNL TITL 2 ZINC-BINDING PROTEIN JRNL REF PROTEINS V. 71 514 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18214955 JRNL DOI 10.1002/PROT.21915

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2JR7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB100187.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 20 MM TRIS, 50 MM REMARK 210 SODIUM CHLORIDE, 14 MM BETA- REMARK 210 MERCAPTOETHANOL, 90% H2O/10% REMARK 210 D2O; 1.5 MM [U-99% 13C; U-99% REMARK 210 15N] PROTEIN, 20 MM TRIS, 50 REMARK 210 MM SODIUM CHLORIDE, 14 MM BETA REMARK 210 -MERCAPTOETHANOL, 99.99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY, 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, NMRPIPE 2.2, SPARKY REMARK 210 3, CSI 1.0, MOLMOL 2K.2, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 85 REMARK 465 HIS A 86 REMARK 465 HIS A 87 REMARK 465 HIS A 88 REMARK 465 HIS A 89

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -50.26 -132.30 REMARK 500 1 PHE A 4 175.54 60.23 REMARK 500 1 HIS A 5 -63.51 -91.01 REMARK 500 1 ASP A 6 137.28 -170.51 REMARK 500 1 SER A 19 32.75 -149.11 REMARK 500 1 GLU A 20 73.49 50.25 REMARK 500 1 GLU A 43 79.22 -67.85 REMARK 500 1 ASP A 44 39.39 -96.34 REMARK 500 1 SER A 50 -68.03 -109.84 REMARK 500 1 PRO A 71 174.83 -59.90 REMARK 500 1 ALA A 75 -179.72 62.35 REMARK 500 1 LYS A 81 35.11 -141.86 REMARK 500 2 ALA A 2 -58.60 -127.52 REMARK 500 2 SER A 19 27.73 -142.87 REMARK 500 2 ASP A 44 35.83 -89.66 REMARK 500 2 GLU A 68 31.81 -99.81 REMARK 500 2 VAL A 70 141.88 67.55 REMARK 500 2 ALA A 75 160.27 67.58 REMARK 500 2 LEU A 79 34.70 -150.79 REMARK 500 2 LYS A 81 85.44 59.73 REMARK 500 3 SER A 19 28.23 -148.83 REMARK 500 3 GLU A 20 82.28 53.74 REMARK 500 3 ASP A 44 41.92 -97.33 REMARK 500 3 SER A 50 -75.39 -83.02 REMARK 500 3 PRO A 73 172.38 -58.94 REMARK 500 3 LEU A 79 128.57 -172.85 REMARK 500 4 ALA A 2 -70.43 -131.47 REMARK 500 4 VAL A 3 26.36 -146.51 REMARK 500 4 SER A 19 32.39 -151.44 REMARK 500 4 GLU A 20 70.49 51.65 REMARK 500 4 ASN A 31 131.50 73.37 REMARK 500 4 GLU A 43 80.22 -68.02 REMARK 500 4 ASP A 44 38.72 -95.05 REMARK 500 4 PRO A 49 36.62 -84.60 REMARK 500 4 SER A 50 -64.11 -155.51 REMARK 500 4 SER A 66 28.36 -141.36 REMARK 500 4 PRO A 71 172.30 -57.85 REMARK 500 4 ALA A 75 100.72 66.59 REMARK 500 4 ASN A 76 38.71 -95.00 REMARK 500 4 LEU A 79 63.67 -154.84 REMARK 500 4 LYS A 81 92.54 60.71 REMARK 500 5 ASP A 30 -167.25 -79.35 REMARK 500 5 ASP A 44 41.78 -97.66 REMARK 500 5 LEU A 79 40.59 -163.35 REMARK 500 5 LYS A 81 25.79 -145.70 REMARK 500 5 LEU A 82 152.36 69.00 REMARK 500 6 ALA A 2 -66.00 -168.96 REMARK 500 6 PHE A 4 -179.95 60.35 REMARK 500 6 HIS A 5 -61.63 -97.28 REMARK 500 6 ASP A 44 41.79 -97.44 REMARK 500 6 ALA A 72 158.10 72.25 REMARK 500 6 SER A 74 -59.28 -147.63 REMARK 500 6 ASN A 76 37.29 -145.49 REMARK 500 6 GLU A 78 94.07 -69.01 REMARK 500 6 LEU A 79 -146.86 -122.67 REMARK 500 6 LYS A 81 79.02 61.06 REMARK 500 6 GLU A 83 -64.69 73.21 REMARK 500 7 HIS A 5 -65.75 -94.52 REMARK 500 7 SER A 19 28.45 -143.10 REMARK 500 7 ASP A 30 -168.21 -77.30 REMARK 500 7 GLU A 43 80.76 -68.80 REMARK 500 7 ASP A 44 41.90 -98.49 REMARK 500 7 SER A 50 -73.85 -83.21 REMARK 500 7 PHE A 64 -72.20 -72.40 REMARK 500 7 PRO A 71 86.93 -56.11 REMARK 500 7 ALA A 72 148.20 -174.71 REMARK 500 7 SER A 74 -54.95 -163.99 REMARK 500 7 LEU A 79 31.14 -150.17 REMARK 500 7 LYS A 81 101.75 -170.85 REMARK 500 8 ALA A 2 -72.21 -126.86 REMARK 500 8 VAL A 3 76.43 -151.54 REMARK 500 8 HIS A 5 -64.43 -92.81 REMARK 500 8 SER A 19 34.77 -152.93 REMARK 500 8 GLU A 20 77.03 52.11 REMARK 500 8 GLU A 43 80.47 -69.74 REMARK 500 8 ASP A 44 40.14 -96.71 REMARK 500 8 SER A 50 -65.51 -109.58 REMARK 500 8 LYS A 77 74.50 -166.96 REMARK 500 9 SER A 19 28.95 -148.93 REMARK 500 9 GLU A 43 80.60 -68.22 REMARK 500 9 ASP A 44 38.88 -96.70 REMARK 500 9 SER A 50 -73.76 -81.11 REMARK 500 9 SER A 66 74.90 61.06 REMARK 500 9 ALA A 72 153.17 72.85 REMARK 500 9 ALA A 75 37.28 -156.00 REMARK 500 9 LEU A 82 150.31 70.28 REMARK 500 9 GLU A 83 -62.26 -158.61 REMARK 500 10 SER A 19 29.91 -145.27 REMARK 500 10 GLU A 20 70.30 51.96 REMARK 500 10 ASP A 30 -169.59 -78.56 REMARK 500 10 GLU A 43 81.13 -67.61 REMARK 500 10 ASP A 44 39.43 -95.64 REMARK 500 10 PRO A 49 45.95 -80.34 REMARK 500 10 SER A 50 -67.93 -157.77 REMARK 500 10 SER A 66 79.13 -164.58 REMARK 500 10 PRO A 71 175.81 -59.14 REMARK 500 10 PRO A 73 98.21 -68.89 REMARK 500 10 GLU A 78 37.94 -140.85 REMARK 500 10 GLU A 83 -52.02 -132.31 REMARK 500 11 SER A 19 33.61 -152.00 REMARK 500 11 GLU A 20 74.32 52.53 REMARK 500 11 CYS A 28 -47.57 -157.16 REMARK 500 11 ASP A 44 39.95 -96.60 REMARK 500 11 SER A 50 -56.83 -164.64 REMARK 500 11 SER A 52 41.87 71.95 REMARK 500 11 SER A 66 43.83 -168.47 REMARK 500 11 PRO A 73 88.00 -56.16 REMARK 500 11 SER A 74 100.48 63.38 REMARK 500 11 ASN A 76 -179.33 64.93 REMARK 500 12 ALA A 2 -66.67 -134.09 REMARK 500 12 SER A 19 25.47 -146.51 REMARK 500 12 ASN A 31 122.01 73.89 REMARK 500 12 GLU A 43 81.80 -67.63 REMARK 500 12 ASP A 44 38.65 -96.64 REMARK 500 12 SER A 50 -68.75 -120.36 REMARK 500 12 SER A 66 42.66 -95.47 REMARK 500 12 LEU A 79 130.11 -175.91 REMARK 500 13 SER A 19 30.84 -146.65 REMARK 500 13 GLU A 20 71.75 52.32 REMARK 500 13 ASP A 30 -163.25 -77.59 REMARK 500 13 GLU A 43 79.17 -68.05 REMARK 500 13 ASP A 44 39.37 -95.02 REMARK 500 13 SER A 50 -65.92 -102.81 REMARK 500 13 GLU A 68 78.56 -105.73 REMARK 500 13 ALA A 72 159.33 71.38 REMARK 500 13 LYS A 77 113.25 -160.37 REMARK 500 13 LEU A 79 129.17 -173.44 REMARK 500 14 PHE A 4 178.67 59.45 REMARK 500 14 HIS A 5 -62.54 -96.77 REMARK 500 14 GLU A 43 80.19 -69.46 REMARK 500 14 ASP A 44 40.32 -95.37 REMARK 500 14 SER A 50 -65.28 -106.69 REMARK 500 14 SER A 66 84.44 -157.34 REMARK 500 14 PRO A 71 171.61 -56.86 REMARK 500 14 ALA A 75 -70.40 71.83 REMARK 500 14 LEU A 79 33.03 -151.54 REMARK 500 14 LYS A 81 73.36 -108.51 REMARK 500 15 GLU A 43 79.20 -68.68 REMARK 500 15 ASP A 44 39.47 -94.07 REMARK 500 15 SER A 50 -67.03 -104.01 REMARK 500 15 SER A 66 40.90 -108.77 REMARK 500 15 GLU A 68 79.62 -116.02 REMARK 500 15 PRO A 71 -178.00 -61.03 REMARK 500 15 SER A 74 -73.15 65.69 REMARK 500 15 LYS A 77 121.27 -174.43 REMARK 500 15 LEU A 82 106.48 65.25 REMARK 500 16 SER A 19 28.06 -143.93 REMARK 500 16 ASP A 44 35.88 -91.95 REMARK 500 16 PRO A 49 40.77 -82.48 REMARK 500 16 SER A 50 -59.09 -150.61 REMARK 500 16 SER A 66 93.36 -172.25 REMARK 500 16 GLU A 68 31.89 -97.16 REMARK 500 16 ALA A 72 157.99 74.52 REMARK 500 16 LYS A 77 104.76 66.55 REMARK 500 16 LEU A 79 44.19 -154.48 REMARK 500 16 LYS A 81 78.28 64.77 REMARK 500 16 GLU A 83 168.08 62.65 REMARK 500 17 ALA A 2 93.95 -168.76 REMARK 500 17 SER A 19 29.93 -147.62 REMARK 500 17 GLU A 43 80.63 -68.09 REMARK 500 17 ASP A 44 40.09 -96.54 REMARK 500 17 SER A 66 39.68 -154.00 REMARK 500 17 GLU A 68 37.63 -99.20 REMARK 500 17 LYS A 77 147.22 -171.56 REMARK 500 17 LEU A 79 128.93 -173.18 REMARK 500 18 VAL A 3 82.29 60.50 REMARK 500 18 SER A 19 28.24 -151.09 REMARK 500 18 ASP A 44 36.82 -92.18 REMARK 500 18 SER A 50 -74.34 -82.45 REMARK 500 18 PHE A 64 -72.93 -72.39 REMARK 500 18 PRO A 71 176.71 -58.16 REMARK 500 18 SER A 74 39.64 -163.00 REMARK 500 18 ALA A 75 -72.71 -132.12 REMARK 500 18 ASN A 76 104.47 62.23 REMARK 500 19 PHE A 4 174.31 62.40 REMARK 500 19 SER A 19 28.44 -142.33 REMARK 500 19 GLU A 20 70.37 50.48 REMARK 500 19 GLU A 43 80.24 -66.43 REMARK 500 19 ASP A 44 39.94 -96.66 REMARK 500 19 SER A 50 -75.11 -83.41 REMARK 500 19 SER A 52 41.24 70.35 REMARK 500 19 GLU A 68 33.25 -99.80 REMARK 500 19 PRO A 71 175.50 -57.87 REMARK 500 19 LYS A 81 88.51 62.53 REMARK 500 20 ALA A 2 -171.58 -67.80 REMARK 500 20 PHE A 4 -176.05 57.42 REMARK 500 20 GLU A 43 81.41 -68.59 REMARK 500 20 ASP A 44 41.29 -97.24 REMARK 500 20 SER A 50 -71.84 -99.43 REMARK 500 20 SER A 74 108.13 -164.77 REMARK 500 20 GLU A 78 66.26 63.84 REMARK 500 20 LEU A 79 33.96 -164.25 REMARK 500 REMARK 500 REMARK: NULL

REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 85 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 26 SG REMARK 620 2 CYS A 28 SG 109.0 REMARK 620 3 CYS A 48 SG 110.0 110.8 REMARK 620 4 CYS A 51 SG 108.8 109.1 109.1 REMARK 620 N 1 2 3

REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 85

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15377 RELATED DB: BMRB

DBREF 2JR7 A 1 81 UNP Q96FX2 DPH3_HUMAN 1 81

SEQADV 2JR7 SER A 66 UNP Q96FX2 CYS 66 ENGINEERED SEQADV 2JR7 LEU A 82 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 GLU A 83 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 84 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 85 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 86 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 87 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 88 UNP Q96FX2 EXPRESSION TAG SEQADV 2JR7 HIS A 89 UNP Q96FX2 EXPRESSION TAG

SEQRES 1 A 89 MET ALA VAL PHE HIS ASP GLU VAL GLU ILE GLU ASP PHE SEQRES 2 A 89 GLN TYR ASP GLU ASP SER GLU THR TYR PHE TYR PRO CYS SEQRES 3 A 89 PRO CYS GLY ASP ASN PHE SER ILE THR LYS GLU ASP LEU SEQRES 4 A 89 GLU ASN GLY GLU ASP VAL ALA THR CYS PRO SER CYS SER SEQRES 5 A 89 LEU ILE ILE LYS VAL ILE TYR ASP LYS ASP GLN PHE VAL SEQRES 6 A 89 SER GLY GLU THR VAL PRO ALA PRO SER ALA ASN LYS GLU SEQRES 7 A 89 LEU VAL LYS LEU GLU HIS HIS HIS HIS HIS HIS

HET ZN A 85 1

HETNAM ZN ZINC ION

FORMUL 2 ZN ZN 2+

HELIX 1 1 LYS A 36 GLY A 42 1 7 HELIX 2 2 ASP A 60 VAL A 65 1 6

SHEET 1 A 3 GLU A 7 GLU A 9 0 SHEET 2 A 3 ILE A 54 ILE A 58 1 O LYS A 56 N VAL A 8 SHEET 3 A 3 VAL A 45 THR A 47 -1 N ALA A 46 O ILE A 55 SHEET 1 B 3 GLN A 14 TYR A 15 0 SHEET 2 B 3 THR A 21 PRO A 25 -1 O PHE A 23 N GLN A 14 SHEET 3 B 3 ASN A 31 THR A 35 -1 O ILE A 34 N TYR A 22

LINK SG CYS A 26 ZN ZN A 85 1555 1555 2.42 LINK SG CYS A 28 ZN ZN A 85 1555 1555 2.40 LINK SG CYS A 48 ZN ZN A 85 1555 1555 2.40 LINK SG CYS A 51 ZN ZN A 85 1555 1555 2.42

SITE 1 AC1 4 CYS A 26 CYS A 28 CYS A 48 CYS A 51

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000