10 20 30 40 50 60 70 80 2JQO - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS 06-JUN-07 2JQO
TITLE NMR SOLUTION STRUCTURE OF BACILLUS SUBTILIS YOBA 21-120: TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR547
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YOBA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 21-120; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YOBA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21
KEYWDS PROTEIN, OB-FOLD, BETA BARREL, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.R.CORT,T.A.RAMELOT,C.X.CHEN,M.JANG,K.CUNNINGHAM,L.MA, AUTHOR 2 R.XIAO,J.LIU,M.C.BARAN,T.B.ACTON,B.ROST,G.T.MONTELIONE, AUTHOR 3 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 3 24-FEB-09 2JQO 1 VERSN REVDAT 2 02-OCT-07 2JQO 1 AUTHOR REVDAT 1 03-JUL-07 2JQO 0
JRNL AUTH J.R.CORT JRNL TITL NMR SOLUTION STRUCTURE OF BACILLUS SUBTILIS YOBA JRNL TITL 2 21-120: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 3 TARGET SR547 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JQO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB100168.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75 MM [U-100% 13C; U-100% REMARK 210 15N] ENTITY, 10 MM REMARK 210 DITHIOTHREITOL, 5 MM CALCIUM REMARK 210 CHLORIDE, 100 MM SODIUM REMARK 210 CHLORIDE, 20 MM AMMONIUM REMARK 210 ACETATE, 0.02 % SODIUM AZIDE, REMARK 210 95% H2O/5% D2O; 0.79 MM [U- REMARK 210 100% N15]; 13C FROM 5% 13C- REMARK 210 GLUCOSE IN GROWTH MEDIUM REMARK 210 ENTITY, 10 MM DITHIOTHREITOL, REMARK 210 5 MM CALCIUM CHLORIDE, 100 MM REMARK 210 SODIUM CHLORIDE, 20 MM REMARK 210 AMMONIUM ACETATE, 0.02 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; REMARK 210 0.75 MM [U-100% 13C; U-100% REMARK 210 15N] ENTITY, 10 MM REMARK 210 DITHIOTHREITOL, 5 MM CALCIUM REMARK 210 CHLORIDE, 100 MM SODIUM REMARK 210 CHLORIDE, 20 MM AMMONIUM REMARK 210 ACETATE, 0.02 % SODIUM AZIDE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D CBCA(CO)NH, 3D REMARK 210 HNCACB, 3D HBHA(CO)NH, 3D HCCH REMARK 210 -TOCSY, 3D HNHA, 3D HNCO, 3D REMARK 210 CCH-TOCSY, 3D 1H-15N NOESY, 3D REMARK 210 1H-13C NOESY, 4D 1H-13C-13C-1H REMARK 210 HMQC-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE, SPARKY, FELIX, REMARK 210 PSVS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY, FEWEST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 FAVORABLE NON-BONDED PARAMETERS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 7 107.26 -174.69 REMARK 500 1 ASP A 24 -146.44 -115.83 REMARK 500 1 ASN A 56 28.86 -143.57 REMARK 500 1 ASN A 67 37.72 -145.30 REMARK 500 1 THR A 68 5.01 -69.86 REMARK 500 1 HIS A 82 -50.02 -155.95 REMARK 500 1 ASN A 88 93.59 60.73 REMARK 500 2 ASN A 2 75.45 -116.86 REMARK 500 2 PHE A 53 46.09 -99.03 REMARK 500 2 ASN A 67 41.04 -85.55 REMARK 500 2 HIS A 82 -42.01 -144.79 REMARK 500 2 ASN A 88 90.46 51.83 REMARK 500 3 ASN A 2 77.86 60.14 REMARK 500 3 GLU A 5 -163.18 64.29 REMARK 500 3 PHE A 53 41.34 -91.32 REMARK 500 3 LEU A 62 31.57 -88.43 REMARK 500 3 THR A 68 32.52 -79.80 REMARK 500 3 HIS A 82 -45.06 -140.99 REMARK 500 3 GLU A 86 59.49 -90.52 REMARK 500 3 ASN A 88 102.06 68.69 REMARK 500 4 ASP A 9 -87.35 -99.28 REMARK 500 4 ASN A 25 -55.08 75.08 REMARK 500 4 THR A 34 17.11 -146.97 REMARK 500 4 ALA A 36 96.43 61.58 REMARK 500 4 PHE A 53 40.17 -97.40 REMARK 500 4 ASN A 88 92.17 61.09 REMARK 500 4 LEU A 101 96.59 68.92 REMARK 500 4 HIS A 104 81.13 57.68 REMARK 500 5 ASN A 4 75.83 57.79 REMARK 500 5 THR A 11 96.97 -65.03 REMARK 500 5 ASP A 24 -69.87 -123.05 REMARK 500 5 ASN A 25 -75.24 -166.09 REMARK 500 5 ASP A 33 -162.73 -163.58 REMARK 500 5 THR A 34 23.07 82.15 REMARK 500 5 ALA A 36 134.36 70.63 REMARK 500 5 PHE A 53 44.65 -98.81 REMARK 500 5 ASN A 88 90.96 57.98 REMARK 500 5 HIS A 107 -76.65 -118.36 REMARK 500 6 ASN A 88 89.99 60.31 REMARK 500 7 ASP A 9 95.39 -69.25 REMARK 500 7 GLU A 10 -50.61 -163.01 REMARK 500 7 ASP A 24 -73.69 -88.42 REMARK 500 7 ASN A 25 -64.13 171.73 REMARK 500 7 ALA A 36 107.45 64.34 REMARK 500 7 PHE A 53 55.58 -118.58 REMARK 500 7 THR A 68 35.30 -97.29 REMARK 500 7 HIS A 82 -37.70 -152.37 REMARK 500 7 ASN A 88 100.08 42.92 REMARK 500 7 GLU A 102 -175.80 -67.35 REMARK 500 7 HIS A 107 -87.36 -160.71 REMARK 500 8 ASP A 24 -66.77 -92.77 REMARK 500 8 ASN A 25 -51.45 160.90 REMARK 500 8 THR A 34 90.69 -63.88 REMARK 500 8 PHE A 53 46.86 -108.65 REMARK 500 8 ASN A 55 -5.52 69.19 REMARK 500 8 LEU A 62 43.13 -87.55 REMARK 500 8 ASN A 88 102.08 59.37 REMARK 500 9 GLN A 6 -66.25 -171.34 REMARK 500 9 ASN A 7 41.89 -91.38 REMARK 500 9 ASP A 9 -164.03 -112.89 REMARK 500 9 ASP A 33 93.24 65.22 REMARK 500 9 ALA A 36 102.98 65.43 REMARK 500 9 PHE A 53 44.08 -106.04 REMARK 500 9 ASN A 55 -40.96 76.37 REMARK 500 9 ASN A 88 101.72 66.30 REMARK 500 9 HIS A 106 -90.71 -121.36 REMARK 500 9 HIS A 107 -51.85 -147.99 REMARK 500 10 ASN A 7 92.58 60.25 REMARK 500 10 VAL A 21 -63.19 -107.23 REMARK 500 10 ASP A 24 -158.08 -106.27 REMARK 500 10 ASP A 33 75.49 54.05 REMARK 500 10 ALA A 36 112.57 70.98 REMARK 500 10 ASN A 67 81.58 -157.77 REMARK 500 10 ASN A 88 95.06 66.68 REMARK 500 11 LYS A 3 -164.67 -111.62 REMARK 500 11 GLN A 6 -72.06 -105.25 REMARK 500 11 ASN A 7 -48.95 174.64 REMARK 500 11 HIS A 82 -60.84 -130.34 REMARK 500 11 GLU A 86 42.52 -92.60 REMARK 500 11 ASN A 88 102.38 64.39 REMARK 500 12 PHE A 53 55.39 -113.59 REMARK 500 12 ASN A 67 47.99 -81.01 REMARK 500 12 GLU A 86 56.50 -110.02 REMARK 500 12 ASN A 88 99.78 63.87 REMARK 500 13 ASP A 24 -155.72 -123.14 REMARK 500 13 ASP A 33 -162.43 60.82 REMARK 500 13 LYS A 35 -174.62 62.96 REMARK 500 13 PHE A 53 40.07 -102.55 REMARK 500 13 ASN A 67 83.77 -153.94 REMARK 500 13 HIS A 82 -35.80 -147.27 REMARK 500 13 ASN A 88 99.51 65.65 REMARK 500 14 ASN A 7 108.17 -55.92 REMARK 500 14 ASP A 24 -70.41 -83.78 REMARK 500 14 ASN A 25 -60.59 -154.68 REMARK 500 14 ASP A 33 101.77 64.28 REMARK 500 14 ALA A 36 102.84 65.25 REMARK 500 14 THR A 68 37.73 -80.43 REMARK 500 14 HIS A 82 -35.33 -164.57 REMARK 500 14 ASN A 88 96.18 62.01 REMARK 500 14 LEU A 101 93.33 -66.49 REMARK 500 14 HIS A 104 -58.54 -128.67 REMARK 500 14 HIS A 105 -166.40 61.21 REMARK 500 15 ASP A 33 86.91 55.50 REMARK 500 15 THR A 34 31.63 -148.44 REMARK 500 15 ALA A 36 150.90 62.44 REMARK 500 15 PHE A 53 46.39 -95.35 REMARK 500 15 ASN A 67 33.50 -89.81 REMARK 500 16 ASN A 56 34.44 -154.49 REMARK 500 16 ASP A 66 -37.98 76.08 REMARK 500 16 ASN A 88 101.11 60.18 REMARK 500 17 ASN A 2 -165.68 -114.52 REMARK 500 17 ASN A 25 -55.59 75.63 REMARK 500 17 PHE A 53 47.12 -100.58 REMARK 500 17 THR A 83 148.22 -172.29 REMARK 500 17 GLU A 86 47.47 -84.25 REMARK 500 17 ASN A 88 93.95 55.57 REMARK 500 18 GLU A 10 -71.46 -107.30 REMARK 500 18 ASN A 25 -60.08 163.72 REMARK 500 18 PHE A 53 49.64 -96.23 REMARK 500 18 THR A 68 44.13 -86.45 REMARK 500 18 GLU A 75 -168.01 -119.08 REMARK 500 18 ASN A 88 92.72 58.12 REMARK 500 18 LYS A 96 147.60 -172.27 REMARK 500 18 GLU A 102 -78.74 -141.83 REMARK 500 19 ASN A 2 176.06 67.37 REMARK 500 19 LYS A 3 -53.55 -175.76 REMARK 500 19 ASP A 9 -37.00 -172.15 REMARK 500 19 ASP A 24 -80.68 -104.26 REMARK 500 19 ASN A 25 -66.57 -144.40 REMARK 500 19 PRO A 37 -71.63 -54.77 REMARK 500 19 PHE A 53 37.09 -96.10 REMARK 500 19 ASN A 67 37.43 -97.57 REMARK 500 19 ASN A 88 97.30 63.43 REMARK 500 20 ASP A 24 -165.19 -111.82 REMARK 500 20 ASN A 55 -7.47 73.84 REMARK 500 20 ASN A 67 43.99 -80.70 REMARK 500 20 HIS A 82 -38.72 -142.54 REMARK 500 20 ASN A 88 99.09 60.77 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15288 RELATED DB: BMRB REMARK 900 RELATED ID: SR547 RELATED DB: TARGETDB
DBREF 2JQO A 2 100 UNP O31835 YOBA_BACSU 22 120
SEQADV 2JQO MET A 1 UNP O31835 EXPRESSION TAG SEQADV 2JQO LEU A 101 UNP O31835 EXPRESSION TAG SEQADV 2JQO GLU A 102 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 103 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 104 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 105 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 106 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 107 UNP O31835 EXPRESSION TAG SEQADV 2JQO HIS A 108 UNP O31835 EXPRESSION TAG
SEQRES 1 A 108 MET ASN LYS ASN GLU GLN ASN GLY ASP GLU THR LYS MET SEQRES 2 A 108 GLN SER LEU VAL GLY TYR VAL VAL LEU LYS ASP ASN GLU SEQRES 3 A 108 ARG ALA ILE LEU ILE THR ASP THR LYS ALA PRO GLY LYS SEQRES 4 A 108 GLU ASP TYR ASN LEU SER GLU GLY GLN LEU MET ASN LYS SEQRES 5 A 108 PHE LYS ASN ASN ILE VAL ILE VAL GLY LEU SER GLU ILE SEQRES 6 A 108 ASP ASN THR ASP ASP LEU LYS ARG GLY GLU LYS ILE LYS SEQRES 7 A 108 VAL TRP PHE HIS THR ARG LYS GLU SER ASN PRO PRO SER SEQRES 8 A 108 ALA THR ILE GLN LYS TYR GLU LEU LEU LEU GLU HIS HIS SEQRES 9 A 108 HIS HIS HIS HIS
HELIX 1 1 GLU A 40 LEU A 44 5 5 HELIX 2 2 SER A 45 PHE A 53 1 9 HELIX 3 3 ASN A 67 LEU A 71 5 5
SHEET 1 A 6 GLN A 14 LYS A 23 0 SHEET 2 A 6 ARG A 27 ILE A 31 -1 O ILE A 29 N LEU A 22 SHEET 3 A 6 ILE A 57 GLY A 61 -1 O VAL A 58 N LEU A 30 SHEET 4 A 6 SER A 91 LEU A 99 1 O ALA A 92 N GLY A 61 SHEET 5 A 6 GLU A 75 LYS A 85 -1 N LYS A 78 O GLU A 98 SHEET 6 A 6 GLN A 14 LYS A 23 -1 N GLY A 18 O ILE A 77
CISPEP 1 ASN A 88 PRO A 89 1 -1.47 CISPEP 2 ASN A 88 PRO A 89 2 7.80 CISPEP 3 ASN A 88 PRO A 89 3 -0.68 CISPEP 4 ASN A 88 PRO A 89 4 -0.87 CISPEP 5 ASN A 88 PRO A 89 5 1.81 CISPEP 6 ASN A 88 PRO A 89 6 2.39 CISPEP 7 ASN A 88 PRO A 89 7 3.08 CISPEP 8 ASN A 88 PRO A 89 8 0.35 CISPEP 9 ASN A 88 PRO A 89 9 2.29 CISPEP 10 ASN A 88 PRO A 89 10 -0.16 CISPEP 11 ASN A 88 PRO A 89 11 2.18 CISPEP 12 ASN A 88 PRO A 89 12 1.60 CISPEP 13 ASN A 88 PRO A 89 13 3.41 CISPEP 14 ASN A 88 PRO A 89 14 1.36 CISPEP 15 ASN A 88 PRO A 89 15 -0.05 CISPEP 16 ASN A 88 PRO A 89 16 -0.34 CISPEP 17 ASN A 88 PRO A 89 17 3.67 CISPEP 18 ASN A 88 PRO A 89 18 2.91 CISPEP 19 ASN A 88 PRO A 89 19 1.26 CISPEP 20 ASN A 88 PRO A 89 20 1.96
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000