10 20 30 40 50 60 70 80 2JPS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 23-MAY-07 2JPS
TITLE NAB2 N-TERMINAL DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-120; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NAB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET30A
KEYWDS PROTEIN, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 45
AUTHOR R.GRANT,N.J.MARSHALL,J.YANG,M.FASKEN,S.KELLY,M.T.HARREMAN, AUTHOR 2 D.NEUHAUS,A.H.CORBETT,M.STEWART
REVDAT 2 24-FEB-09 2JPS 1 VERSN REVDAT 1 18-MAR-08 2JPS 0
JRNL AUTH R.P.GRANT,N.J.MARSHALL,J.C.YANG,M.B.FASKEN, JRNL AUTH 2 S.M.KELLY,M.T.HARREMAN,D.NEUHAUS,A.H.CORBETT, JRNL AUTH 3 M.STEWART JRNL TITL STRUCTURE OF THE N-TERMINAL MLP1-BINDING DOMAIN OF JRNL TITL 2 THE SACCHAROMYCES CEREVISIAE MRNA-BINDING PROTEIN, JRNL TITL 3 NAB2 JRNL REF J.MOL.BIOL. V. 376 1048 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18190927 JRNL DOI 10.1016/J.JMB.2007.11.087
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JPS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB100136.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 160 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-98% 13C; U-98% 15N] REMARK 210 NAB2_NTD, 25 MM SODIUM REMARK 210 PHOSPHATE, 10 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% [U-2H] REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 2D 1H-13C HSQC CT, 2D 1H REMARK 210 -1H NOESY, 2D 1H-1H NOESY 15N REMARK 210 FILTERED IN F2, 3D HNCACB, 3D REMARK 210 CBCA(CO)NH, 3D HNHAHB, 3D REMARK 210 HBHA(CO)NH, 3D HCCH-TOCSY, 3D REMARK 210 HCCH-COSY, 3D 1H-15N NOESY, 3D REMARK 210 1H-13C NOESY ALIPHATIC, 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, DMX, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 45 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 56 75.05 -108.95 REMARK 500 2 PHE A 56 75.23 -110.28 REMARK 500 2 ASP A 103 69.37 -117.40 REMARK 500 2 ILE A 104 79.78 53.32 REMARK 500 3 GLU A 26 -170.19 53.42 REMARK 500 3 PHE A 56 75.31 -108.74 REMARK 500 3 ASP A 103 79.98 -119.20 REMARK 500 3 ILE A 104 59.83 -141.07 REMARK 500 4 GLU A 26 162.57 58.79 REMARK 500 4 PHE A 56 74.84 -107.79 REMARK 500 4 ILE A 104 -58.61 -122.28 REMARK 500 5 SER A 2 47.52 -142.86 REMARK 500 5 GLN A 3 74.29 53.09 REMARK 500 5 PHE A 56 74.86 -110.70 REMARK 500 5 ASP A 103 -59.45 -142.42 REMARK 500 6 PHE A 56 72.40 -107.70 REMARK 500 6 ILE A 104 -58.77 -122.21 REMARK 500 7 SER A 2 -166.79 -117.26 REMARK 500 7 GLU A 26 177.05 54.14 REMARK 500 7 PHE A 56 72.98 -107.07 REMARK 500 7 ILE A 104 76.80 -116.06 REMARK 500 8 GLN A 3 51.06 -140.09 REMARK 500 8 GLU A 26 168.84 56.15 REMARK 500 8 PHE A 56 73.29 -105.96 REMARK 500 8 SER A 102 79.17 52.79 REMARK 500 8 ILE A 104 79.19 53.38 REMARK 500 9 PHE A 56 74.78 -107.90 REMARK 500 9 ASP A 103 -169.95 -121.71 REMARK 500 10 PHE A 56 75.15 -105.74 REMARK 500 10 GLN A 101 43.05 -109.40 REMARK 500 10 SER A 102 -51.36 -175.16 REMARK 500 11 GLU A 26 179.77 52.87 REMARK 500 11 PHE A 56 76.05 -107.34 REMARK 500 12 GLN A 3 44.71 -140.80 REMARK 500 12 PHE A 56 76.46 -109.83 REMARK 500 12 SER A 102 73.82 52.68 REMARK 500 12 ILE A 104 -59.09 -124.11 REMARK 500 13 SER A 2 -169.28 -118.81 REMARK 500 13 PHE A 56 74.04 -108.61 REMARK 500 14 PHE A 56 74.08 -107.80 REMARK 500 15 ASN A 25 -164.40 -113.62 REMARK 500 15 GLU A 26 -170.80 54.15 REMARK 500 15 PHE A 56 74.59 -111.32 REMARK 500 15 ASP A 103 -165.63 -120.45 REMARK 500 16 SER A 2 -58.74 -144.56 REMARK 500 16 PHE A 56 74.74 -105.87 REMARK 500 17 PHE A 56 73.04 -108.05 REMARK 500 17 GLN A 101 40.89 -107.03 REMARK 500 17 SER A 102 46.15 -172.19 REMARK 500 17 ASP A 103 -169.88 -128.53 REMARK 500 18 PHE A 56 77.00 -105.60 REMARK 500 19 PHE A 24 67.08 -114.17 REMARK 500 19 GLU A 26 149.92 61.81 REMARK 500 19 PHE A 56 74.45 -109.42 REMARK 500 20 PHE A 56 75.07 -110.34 REMARK 500 21 ASN A 25 -168.31 -111.69 REMARK 500 21 GLU A 26 -175.10 53.58 REMARK 500 21 PHE A 56 72.69 -104.79 REMARK 500 22 GLN A 3 70.91 52.96 REMARK 500 22 PHE A 56 72.64 -105.41 REMARK 500 22 ILE A 104 91.12 53.33 REMARK 500 23 GLN A 3 74.76 -117.18 REMARK 500 23 PHE A 24 73.05 -116.30 REMARK 500 23 GLU A 26 147.96 61.94 REMARK 500 23 PHE A 56 72.06 -106.70 REMARK 500 24 PHE A 24 59.36 -114.77 REMARK 500 24 PHE A 56 76.24 -105.68 REMARK 500 24 ASP A 103 42.28 -145.04 REMARK 500 25 PHE A 56 76.55 -107.84 REMARK 500 25 ASP A 103 -56.93 -121.07 REMARK 500 26 ASN A 25 -163.92 -113.59 REMARK 500 26 GLU A 26 -166.80 55.48 REMARK 500 26 PHE A 56 74.73 -109.36 REMARK 500 27 PHE A 56 74.53 -108.67 REMARK 500 27 SER A 102 77.18 52.79 REMARK 500 28 GLN A 3 73.25 -116.87 REMARK 500 28 PHE A 56 75.31 -107.45 REMARK 500 28 SER A 102 -49.44 -178.94 REMARK 500 28 ILE A 104 -58.51 -121.20 REMARK 500 29 GLN A 3 78.04 52.62 REMARK 500 29 PHE A 24 61.38 -113.81 REMARK 500 29 PHE A 56 76.19 -108.75 REMARK 500 29 GLN A 101 72.61 52.54 REMARK 500 29 SER A 102 82.29 52.39 REMARK 500 29 ASP A 103 -59.55 -137.36 REMARK 500 30 GLN A 3 76.70 -116.10 REMARK 500 30 ASN A 25 48.03 -106.05 REMARK 500 30 PHE A 56 72.37 -105.53 REMARK 500 30 GLN A 101 93.08 52.48 REMARK 500 30 SER A 102 82.46 52.66 REMARK 500 30 ILE A 104 76.51 53.46 REMARK 500 31 PHE A 56 71.13 -108.45 REMARK 500 31 SER A 102 78.85 52.13 REMARK 500 32 SER A 2 -62.84 -141.23 REMARK 500 32 PHE A 56 76.69 -106.44 REMARK 500 32 GLN A 101 93.16 52.47 REMARK 500 32 SER A 102 74.46 52.64 REMARK 500 32 ILE A 104 64.43 -156.88 REMARK 500 33 GLN A 3 73.28 52.66 REMARK 500 33 PHE A 24 57.80 -114.15 REMARK 500 33 PHE A 56 74.62 -110.61 REMARK 500 34 VAL A 45 -62.10 64.34 REMARK 500 34 PHE A 56 74.62 -109.26 REMARK 500 34 GLN A 80 -59.82 -132.19 REMARK 500 35 ILE A 21 109.65 -54.08 REMARK 500 35 ASN A 25 40.08 -107.97 REMARK 500 35 PHE A 56 72.06 -105.91 REMARK 500 36 PHE A 56 76.92 -108.87 REMARK 500 36 GLN A 80 55.12 -150.92 REMARK 500 36 GLU A 82 -163.52 -167.75 REMARK 500 37 SER A 2 -59.22 -125.42 REMARK 500 37 GLU A 26 166.06 57.80 REMARK 500 37 PHE A 56 76.16 -106.43 REMARK 500 37 ILE A 104 47.96 -140.09 REMARK 500 38 PHE A 56 76.81 -104.13 REMARK 500 39 PHE A 24 69.88 -118.05 REMARK 500 39 PHE A 56 76.29 -113.39 REMARK 500 39 GLN A 101 100.12 54.47 REMARK 500 40 PHE A 56 76.26 -110.12 REMARK 500 41 GLU A 26 172.20 55.89 REMARK 500 41 PHE A 56 75.50 -110.07 REMARK 500 42 PHE A 56 79.48 -106.32 REMARK 500 43 SER A 2 -167.18 -123.05 REMARK 500 43 GLN A 3 75.08 -118.33 REMARK 500 43 ASP A 27 96.40 52.84 REMARK 500 43 ILE A 28 -60.61 -133.83 REMARK 500 43 PHE A 56 76.27 -104.62 REMARK 500 43 GLN A 101 156.64 60.33 REMARK 500 43 ASP A 103 41.88 -140.63 REMARK 500 44 PHE A 56 76.63 -108.22 REMARK 500 45 PHE A 56 72.99 -109.57 REMARK 500 45 GLN A 80 52.37 -144.55 REMARK 500 45 GLU A 82 -163.37 -168.26 REMARK 500 45 SER A 102 81.50 53.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 61 0.23 SIDE_CHAIN REMARK 500 1 ARG A 92 0.23 SIDE_CHAIN REMARK 500 2 ARG A 61 0.26 SIDE_CHAIN REMARK 500 2 ARG A 92 0.28 SIDE_CHAIN REMARK 500 3 ARG A 61 0.24 SIDE_CHAIN REMARK 500 3 ARG A 92 0.32 SIDE_CHAIN REMARK 500 4 ARG A 61 0.30 SIDE_CHAIN REMARK 500 4 ARG A 92 0.28 SIDE_CHAIN REMARK 500 5 ARG A 61 0.28 SIDE_CHAIN REMARK 500 5 ARG A 92 0.29 SIDE_CHAIN REMARK 500 6 ARG A 61 0.24 SIDE_CHAIN REMARK 500 6 ARG A 92 0.28 SIDE_CHAIN REMARK 500 7 ARG A 61 0.24 SIDE_CHAIN REMARK 500 7 ARG A 92 0.23 SIDE_CHAIN REMARK 500 8 ARG A 61 0.32 SIDE_CHAIN REMARK 500 8 ARG A 92 0.31 SIDE_CHAIN REMARK 500 9 ARG A 61 0.30 SIDE_CHAIN REMARK 500 9 ARG A 92 0.25 SIDE_CHAIN REMARK 500 10 ARG A 61 0.21 SIDE_CHAIN REMARK 500 10 ARG A 92 0.23 SIDE_CHAIN REMARK 500 11 ARG A 61 0.25 SIDE_CHAIN REMARK 500 11 ARG A 92 0.27 SIDE_CHAIN REMARK 500 12 ARG A 61 0.25 SIDE_CHAIN REMARK 500 12 ARG A 92 0.31 SIDE_CHAIN REMARK 500 13 ARG A 61 0.25 SIDE_CHAIN REMARK 500 13 ARG A 92 0.23 SIDE_CHAIN REMARK 500 14 ARG A 61 0.28 SIDE_CHAIN REMARK 500 14 ARG A 92 0.24 SIDE_CHAIN REMARK 500 15 ARG A 61 0.32 SIDE_CHAIN REMARK 500 15 ARG A 92 0.32 SIDE_CHAIN REMARK 500 16 ARG A 61 0.26 SIDE_CHAIN REMARK 500 16 ARG A 92 0.31 SIDE_CHAIN REMARK 500 17 ARG A 61 0.26 SIDE_CHAIN REMARK 500 17 ARG A 92 0.30 SIDE_CHAIN REMARK 500 18 ARG A 61 0.32 SIDE_CHAIN REMARK 500 18 ARG A 92 0.23 SIDE_CHAIN REMARK 500 19 ARG A 61 0.22 SIDE_CHAIN REMARK 500 19 ARG A 92 0.29 SIDE_CHAIN REMARK 500 20 ARG A 61 0.25 SIDE_CHAIN REMARK 500 20 ARG A 92 0.27 SIDE_CHAIN REMARK 500 21 ARG A 61 0.23 SIDE_CHAIN REMARK 500 21 ARG A 92 0.29 SIDE_CHAIN REMARK 500 22 ARG A 61 0.31 SIDE_CHAIN REMARK 500 22 ARG A 92 0.30 SIDE_CHAIN REMARK 500 23 ARG A 61 0.32 SIDE_CHAIN REMARK 500 23 ARG A 92 0.31 SIDE_CHAIN REMARK 500 24 ARG A 61 0.29 SIDE_CHAIN REMARK 500 24 ARG A 92 0.26 SIDE_CHAIN REMARK 500 25 ARG A 61 0.25 SIDE_CHAIN REMARK 500 25 ARG A 92 0.27 SIDE_CHAIN REMARK 500 26 ARG A 61 0.32 SIDE_CHAIN REMARK 500 26 ARG A 92 0.31 SIDE_CHAIN REMARK 500 27 ARG A 61 0.23 SIDE_CHAIN REMARK 500 27 ARG A 92 0.30 SIDE_CHAIN REMARK 500 28 ARG A 61 0.27 SIDE_CHAIN REMARK 500 28 ARG A 92 0.24 SIDE_CHAIN REMARK 500 29 ARG A 61 0.25 SIDE_CHAIN REMARK 500 29 ARG A 92 0.27 SIDE_CHAIN REMARK 500 30 ARG A 61 0.32 SIDE_CHAIN REMARK 500 30 ARG A 92 0.23 SIDE_CHAIN REMARK 500 31 ARG A 61 0.31 SIDE_CHAIN REMARK 500 31 ARG A 92 0.32 SIDE_CHAIN REMARK 500 32 ARG A 61 0.22 SIDE_CHAIN REMARK 500 32 ARG A 92 0.32 SIDE_CHAIN REMARK 500 33 ARG A 61 0.24 SIDE_CHAIN REMARK 500 33 ARG A 92 0.21 SIDE_CHAIN REMARK 500 34 ARG A 61 0.23 SIDE_CHAIN REMARK 500 34 ARG A 92 0.28 SIDE_CHAIN REMARK 500 35 ARG A 61 0.27 SIDE_CHAIN REMARK 500 35 ARG A 92 0.32 SIDE_CHAIN REMARK 500 36 ARG A 61 0.27 SIDE_CHAIN REMARK 500 36 ARG A 92 0.31 SIDE_CHAIN REMARK 500 37 ARG A 61 0.31 SIDE_CHAIN REMARK 500 37 ARG A 92 0.26 SIDE_CHAIN REMARK 500 38 ARG A 61 0.28 SIDE_CHAIN REMARK 500 38 ARG A 92 0.31 SIDE_CHAIN REMARK 500 39 ARG A 61 0.25 SIDE_CHAIN REMARK 500 39 ARG A 92 0.31 SIDE_CHAIN REMARK 500 40 ARG A 61 0.28 SIDE_CHAIN REMARK 500 40 ARG A 92 0.28 SIDE_CHAIN REMARK 500 41 ARG A 61 0.31 SIDE_CHAIN REMARK 500 41 ARG A 92 0.26 SIDE_CHAIN REMARK 500 42 ARG A 61 0.23 SIDE_CHAIN REMARK 500 42 ARG A 92 0.32 SIDE_CHAIN REMARK 500 43 ARG A 61 0.32 SIDE_CHAIN REMARK 500 43 ARG A 92 0.23 SIDE_CHAIN REMARK 500 44 ARG A 61 0.32 SIDE_CHAIN REMARK 500 44 ARG A 92 0.31 SIDE_CHAIN REMARK 500 45 ARG A 61 0.22 SIDE_CHAIN REMARK 500 45 ARG A 92 0.29 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15263 RELATED DB: BMRB
DBREF 2JPS A 1 105 UNP P32505 NAB2_YEAST 1 105
SEQRES 1 A 105 MET SER GLN GLU GLN TYR THR GLU ASN LEU LYS VAL ILE SEQRES 2 A 105 VAL ALA GLU LYS LEU ALA GLY ILE PRO ASN PHE ASN GLU SEQRES 3 A 105 ASP ILE LYS TYR VAL ALA GLU TYR ILE VAL LEU LEU ILE SEQRES 4 A 105 VAL ASN GLY GLY THR VAL GLU SER VAL VAL ASP GLU LEU SEQRES 5 A 105 ALA SER LEU PHE ASP SER VAL SER ARG ASP THR LEU ALA SEQRES 6 A 105 ASN VAL VAL GLN THR ALA PHE PHE ALA LEU GLU ALA LEU SEQRES 7 A 105 GLN GLN GLY GLU SER ALA GLU ASN ILE VAL SER LYS ILE SEQRES 8 A 105 ARG MET MET ASN ALA GLN SER LEU GLY GLN SER ASP ILE SEQRES 9 A 105 ALA
HELIX 1 1 GLN A 3 ILE A 21 1 19 HELIX 2 2 ILE A 28 GLY A 42 1 15 HELIX 3 3 THR A 44 PHE A 56 1 13 HELIX 4 4 SER A 60 GLY A 81 1 22 HELIX 5 5 ALA A 84 LEU A 99 1 16
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000