10 20 30 40 50 60 70 80 2JPA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION/DNA 01-MAY-07 2JPA
TITLE STRUCTURE OF THE WILMS TUMOR SUPPRESSOR PROTEIN ZINC FINGER TITLE 2 DOMAIN BOUND TO DNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: WILMS TUMOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 174-291; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*DCP*DGP*DCP*DGP*DGP*DGP*DGP*DGP*DCP*DGP*DTP*DCP*DTP*DG) COMPND 9 -3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*DCP*DAP*DGP*DAP*DCP*DGP*DCP*DCP*DCP*DCP*DCP*DGP*DCP*DG) COMPND 15 -3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21D; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES
KEYWDS DNA BINDING, NUCLEIC ACID RECOGNITION, X-RAY, NMR, RESIDUAL KEYWDS 2 DIPOLAR COUPLING, ZINC FINGER, METAL-BINDING, KEYWDS 3 TRANSCRIPTION/DNA COMPLEX
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.STOLL,B.M.LEE,E.W.DEBLER,J.H.LAITY,I.A.WILSON,H.J.DYSON, AUTHOR 2 P.E.WRIGHT
REVDAT 2 24-FEB-09 2JPA 1 VERSN REVDAT 1 30-OCT-07 2JPA 0
JRNL AUTH R.STOLL,B.M.LEE,E.W.DEBLER,J.H.LAITY,I.A.WILSON, JRNL AUTH 2 H.J.DYSON,P.E.WRIGHT JRNL TITL STRUCTURE OF THE WILMS TUMOR SUPPRESSOR PROTEIN JRNL TITL 2 ZINC FINGER DOMAIN BOUND TO DNA JRNL REF J.MOL.BIOL. V. 372 1227 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17716689 JRNL DOI 10.1016/J.JMB.2007.07.017
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JPA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-07. REMARK 100 THE RCSB ID CODE IS RCSB100118.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : FILTER-EDIT NOESY, IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AMBER REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DT B 134 C5' DT B 134 C4' 0.042 REMARK 500 1 DG B 137 C5' DG B 137 C4' 0.058 REMARK 500 2 DG B 130 C5' DG B 130 C4' 0.047 REMARK 500 2 DT B 134 C5' DT B 134 C4' 0.054 REMARK 500 2 DT B 136 O4' DT B 136 C4' -0.065 REMARK 500 3 DT B 134 P DT B 134 O5' 0.066 REMARK 500 3 DT B 134 N1 DT B 134 C2 0.051 REMARK 500 4 DT B 134 O4' DT B 134 C1' -0.081 REMARK 500 4 DT B 134 O4' DT B 134 C4' -0.076 REMARK 500 4 DT B 134 N1 DT B 134 C2 0.061 REMARK 500 4 DT B 136 O4' DT B 136 C1' -0.078 REMARK 500 4 DT B 136 O4' DT B 136 C4' -0.069 REMARK 500 4 DT B 136 C5 DT B 136 C7 0.087 REMARK 500 4 DG C 140 P DG C 140 O5' 0.061 REMARK 500 5 DG B 127 C5' DG B 127 C4' 0.054 REMARK 500 5 DG B 128 C5' DG B 128 C4' 0.058 REMARK 500 5 DT B 136 C5' DT B 136 C4' 0.047 REMARK 500 5 DC C 147 C5' DC C 147 C4' 0.055 REMARK 500 6 DG B 127 P DG B 127 O5' 0.076 REMARK 500 6 DG B 128 O4' DG B 128 C4' -0.068 REMARK 500 6 DG B 129 C5' DG B 129 C4' 0.048 REMARK 500 6 DG B 129 N1 DG B 129 C2 -0.052 REMARK 500 6 DG B 131 C5' DG B 131 C4' 0.053 REMARK 500 6 DT B 134 O3' DT B 134 C3' -0.056 REMARK 500 7 DC B 132 C5' DC B 132 C4' 0.044 REMARK 500 7 DT B 136 C5 DT B 136 C7 0.042 REMARK 500 7 DG C 143 C4' DG C 143 C3' 0.064 REMARK 500 7 DC C 144 P DC C 144 O5' -0.061 REMARK 500 7 DC C 144 O3' DC C 144 C3' -0.043 REMARK 500 8 DG B 133 C5' DG B 133 C4' 0.051 REMARK 500 8 DG B 133 O3' DG B 133 C3' -0.041 REMARK 500 8 DT B 134 C5' DT B 134 C4' 0.044 REMARK 500 8 DT B 134 C5 DT B 134 C6 0.048 REMARK 500 8 DC B 135 C5' DC B 135 C4' 0.061 REMARK 500 8 DT B 136 O3' DT B 136 C3' -0.049 REMARK 500 8 DT B 136 C5 DT B 136 C7 0.052 REMARK 500 9 DG B 131 O3' DG B 131 C3' -0.037 REMARK 500 9 DG B 133 C5' DG B 133 C4' 0.079 REMARK 500 9 DT B 134 C5' DT B 134 C4' 0.045 REMARK 500 9 DT B 136 C5' DT B 136 C4' 0.063 REMARK 500 9 DT B 136 O4' DT B 136 C4' -0.092 REMARK 500 9 DG B 137 N9 DG B 137 C4 0.065 REMARK 500 9 DC C 147 C5' DC C 147 C4' 0.042 REMARK 500 10 DG B 133 C5' DG B 133 C4' 0.063 REMARK 500 11 DG B 131 C5' DG B 131 C4' 0.043 REMARK 500 11 DT B 134 C5' DT B 134 C4' 0.063 REMARK 500 11 DC B 135 C4 DC B 135 N4 -0.060 REMARK 500 11 DG C 140 C5' DG C 140 C4' 0.051 REMARK 500 12 DG B 129 P DG B 129 O5' 0.067 REMARK 500 12 DG B 133 O3' DG B 133 C3' -0.038 REMARK 500 REMARK 500 THIS ENTRY HAS 75 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC B 132 O4' - C4' - C3' ANGL. DEV. = 4.0 DEGREES REMARK 500 1 DC B 135 O4' - C4' - C3' ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DC C 144 O4' - C4' - C3' ANGL. DEV. = 4.6 DEGREES REMARK 500 1 DC C 147 O4' - C4' - C3' ANGL. DEV. = 3.7 DEGREES REMARK 500 1 DC C 150 O4' - C4' - C3' ANGL. DEV. = 4.9 DEGREES REMARK 500 1 DG C 151 O4' - C4' - C3' ANGL. DEV. = 4.7 DEGREES REMARK 500 1 DG C 151 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 1 HIS A 23 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 1 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 1 ARG A 60 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 ARG A 114 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 DC B 126 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 2 DG B 128 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 2 DG B 131 O4' - C1' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 2 DT B 134 O4' - C4' - C3' ANGL. DEV. = 4.2 DEGREES REMARK 500 2 DT B 134 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 2 DT B 136 O4' - C4' - C3' ANGL. DEV. = 7.6 DEGREES REMARK 500 2 DG B 137 O4' - C1' - C2' ANGL. DEV. = 4.1 DEGREES REMARK 500 2 DA C 141 O4' - C4' - C3' ANGL. DEV. = 3.7 DEGREES REMARK 500 2 DC C 144 O4' - C4' - C3' ANGL. DEV. = 4.3 DEGREES REMARK 500 2 DC C 148 O4' - C4' - C3' ANGL. DEV. = 4.2 DEGREES REMARK 500 2 HIS A 23 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 2 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 VAL A 113 CA - CB - CG2 ANGL. DEV. = 12.4 DEGREES REMARK 500 3 DT B 134 C5' - C4' - O4' ANGL. DEV. = 7.6 DEGREES REMARK 500 3 DG B 137 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 3 DA C 139 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES REMARK 500 3 DC C 148 O4' - C4' - C3' ANGL. DEV. = 4.0 DEGREES REMARK 500 3 DC C 148 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 3 HIS A 23 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 3 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 3 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 ARG A 50 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 3 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 ARG A 98 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 4 DC B 126 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 4 DG B 130 O4' - C4' - C3' ANGL. DEV. = 5.2 DEGREES REMARK 500 4 DG B 131 O4' - C4' - C3' ANGL. DEV. = 4.4 DEGREES REMARK 500 4 DT B 134 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 4 DC B 135 O5' - C5' - C4' ANGL. DEV. = -5.9 DEGREES REMARK 500 4 DC B 135 C5' - C4' - O4' ANGL. DEV. = 6.7 DEGREES REMARK 500 4 DT B 136 O4' - C4' - C3' ANGL. DEV. = 3.8 DEGREES REMARK 500 4 DT B 136 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 329 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 17.22 -163.13 REMARK 500 1 CYS A 14 -75.89 -124.89 REMARK 500 1 GLU A 45 29.84 -160.87 REMARK 500 1 THR A 71 -65.25 -93.46 REMARK 500 1 PRO A 100 7.35 -68.48 REMARK 500 1 SER A 101 74.40 -174.88 REMARK 500 1 CYS A 102 -80.70 -164.48 REMARK 500 2 CYS A 14 -73.65 -126.50 REMARK 500 2 LYS A 35 65.60 -119.51 REMARK 500 2 LYS A 42 -45.09 75.79 REMARK 500 2 CYS A 44 -76.86 -148.50 REMARK 500 2 LYS A 65 77.88 -115.84 REMARK 500 2 CYS A 72 -104.28 -103.84 REMARK 500 2 GLN A 73 11.04 -164.59 REMARK 500 2 PRO A 100 20.34 -68.03 REMARK 500 2 SER A 101 25.59 -164.39 REMARK 500 2 GLN A 103 36.16 -163.82 REMARK 500 3 THR A 71 -68.23 -90.74 REMARK 500 3 CYS A 102 -84.02 -167.77 REMARK 500 4 CYS A 14 -81.36 -115.40 REMARK 500 4 CYS A 44 -74.07 -131.20 REMARK 500 4 THR A 71 -74.74 -96.80 REMARK 500 4 PRO A 100 26.93 -73.30 REMARK 500 4 SER A 101 24.73 -162.17 REMARK 500 4 GLN A 103 27.29 -166.53 REMARK 500 5 GLU A 45 28.51 -157.29 REMARK 500 5 CYS A 72 -104.38 -108.32 REMARK 500 5 GLN A 73 6.39 -163.00 REMARK 500 5 PRO A 100 33.36 -74.68 REMARK 500 5 SER A 101 7.94 -164.47 REMARK 500 5 GLN A 103 22.70 -164.93 REMARK 500 6 CYS A 14 -80.89 -133.09 REMARK 500 6 CYS A 44 -77.37 -104.68 REMARK 500 6 THR A 71 -75.00 -99.80 REMARK 500 6 GLN A 103 21.86 -164.60 REMARK 500 7 SER A 2 12.67 -158.45 REMARK 500 7 GLU A 45 28.80 -153.10 REMARK 500 7 THR A 71 -73.53 -93.34 REMARK 500 7 CYS A 102 -80.21 -168.25 REMARK 500 8 SER A 2 11.83 -154.97 REMARK 500 8 CYS A 14 -81.37 -79.39 REMARK 500 8 GLU A 34 -50.19 -122.17 REMARK 500 8 CYS A 44 -72.95 -93.49 REMARK 500 8 GLU A 45 16.20 57.31 REMARK 500 8 THR A 71 -75.26 -90.79 REMARK 500 8 LYS A 93 78.51 -119.93 REMARK 500 8 GLN A 103 29.95 -162.17 REMARK 500 9 PRO A 6 -100.69 -82.48 REMARK 500 9 CYS A 14 -81.89 -85.91 REMARK 500 9 GLU A 45 28.91 -160.49 REMARK 500 9 THR A 71 -75.38 -99.09 REMARK 500 9 PRO A 100 22.67 -71.48 REMARK 500 9 SER A 101 27.73 -163.22 REMARK 500 9 GLN A 103 27.42 -162.64 REMARK 500 10 SER A 2 30.43 -79.97 REMARK 500 10 GLU A 3 52.59 -116.13 REMARK 500 10 PRO A 12 99.89 -54.44 REMARK 500 10 ASN A 15 23.68 -165.40 REMARK 500 10 LYS A 35 106.70 -43.45 REMARK 500 10 THR A 71 -76.12 -97.34 REMARK 500 10 PRO A 100 48.15 -75.54 REMARK 500 10 SER A 101 -22.65 -176.35 REMARK 500 10 GLN A 103 26.74 -162.02 REMARK 500 11 CYS A 14 -78.23 -121.24 REMARK 500 11 GLU A 45 19.64 -155.37 REMARK 500 11 SER A 49 42.81 -83.88 REMARK 500 11 ARG A 50 144.07 -178.42 REMARK 500 11 THR A 71 -72.64 -89.94 REMARK 500 11 SER A 101 17.80 -143.55 REMARK 500 11 GLN A 103 26.58 -167.09 REMARK 500 12 PRO A 12 88.86 -64.76 REMARK 500 12 ASN A 15 16.61 -171.41 REMARK 500 12 LYS A 42 -44.61 70.63 REMARK 500 12 THR A 71 -70.54 -91.14 REMARK 500 12 PRO A 100 22.54 -72.69 REMARK 500 12 SER A 101 19.27 -154.68 REMARK 500 12 GLN A 103 24.92 -144.36 REMARK 500 13 CYS A 14 -77.97 -114.42 REMARK 500 13 ASN A 15 19.47 57.82 REMARK 500 13 LYS A 42 -51.18 73.21 REMARK 500 13 THR A 71 -70.57 -95.76 REMARK 500 13 CYS A 102 -83.41 -97.86 REMARK 500 14 CYS A 14 -67.35 -120.16 REMARK 500 14 LYS A 42 -48.50 71.70 REMARK 500 14 THR A 71 -74.59 -92.67 REMARK 500 14 PRO A 100 20.41 -75.83 REMARK 500 14 SER A 101 64.55 -172.84 REMARK 500 14 CYS A 102 -82.85 -161.98 REMARK 500 15 CYS A 14 -75.89 -110.33 REMARK 500 15 ASN A 15 29.95 47.91 REMARK 500 15 CYS A 44 -74.66 -133.75 REMARK 500 15 THR A 62 -49.53 -153.75 REMARK 500 15 VAL A 64 -68.19 68.77 REMARK 500 15 ARG A 98 -86.12 -109.35 REMARK 500 15 TRP A 99 -179.87 54.24 REMARK 500 15 SER A 101 64.28 -170.75 REMARK 500 15 GLN A 103 13.97 -160.70 REMARK 500 16 LYS A 35 69.02 -118.10 REMARK 500 16 THR A 71 -71.99 -88.98 REMARK 500 16 PRO A 100 23.25 -72.95 REMARK 500 16 SER A 101 23.13 -161.53 REMARK 500 16 GLN A 103 29.50 -164.38 REMARK 500 17 GLU A 3 35.64 -77.12 REMARK 500 17 CYS A 14 -78.13 -85.20 REMARK 500 17 ASN A 15 27.18 49.62 REMARK 500 17 CYS A 44 -81.43 -136.81 REMARK 500 17 VAL A 64 -79.03 -46.52 REMARK 500 17 THR A 71 -73.10 -96.08 REMARK 500 17 PRO A 100 23.70 -73.43 REMARK 500 17 SER A 101 18.46 -160.27 REMARK 500 17 GLN A 103 36.23 -146.08 REMARK 500 18 LYS A 4 49.61 -80.41 REMARK 500 18 CYS A 14 -72.18 -134.59 REMARK 500 18 GLU A 45 15.46 -157.65 REMARK 500 18 THR A 71 -76.53 -98.76 REMARK 500 18 PRO A 100 27.05 -74.51 REMARK 500 18 SER A 101 35.93 -164.58 REMARK 500 18 GLN A 103 24.18 -161.28 REMARK 500 19 CYS A 14 -77.58 -127.93 REMARK 500 19 LYS A 42 8.30 -69.47 REMARK 500 19 THR A 71 -66.09 -101.59 REMARK 500 19 PRO A 100 37.86 -76.66 REMARK 500 19 SER A 101 35.38 -165.62 REMARK 500 19 CYS A 102 -87.13 -147.93 REMARK 500 20 CYS A 14 -79.25 -93.32 REMARK 500 20 GLU A 45 34.56 -151.31 REMARK 500 20 THR A 71 -63.81 -95.98 REMARK 500 20 PRO A 100 27.45 -73.51 REMARK 500 20 SER A 101 20.55 -164.21 REMARK 500 20 GLN A 103 15.95 -161.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 DC B 124 0.07 SIDE_CHAIN REMARK 500 1 DG B 127 0.05 SIDE_CHAIN REMARK 500 1 DG B 129 0.07 SIDE_CHAIN REMARK 500 1 DT B 136 0.07 SIDE_CHAIN REMARK 500 1 TYR A 18 0.12 SIDE_CHAIN REMARK 500 1 ARG A 74 0.08 SIDE_CHAIN REMARK 500 1 ARG A 114 0.12 SIDE_CHAIN REMARK 500 2 DC B 135 0.07 SIDE_CHAIN REMARK 500 2 DG B 137 0.07 SIDE_CHAIN REMARK 500 2 DG C 151 0.08 SIDE_CHAIN REMARK 500 2 TYR A 18 0.10 SIDE_CHAIN REMARK 500 2 ARG A 47 0.09 SIDE_CHAIN REMARK 500 3 DG B 128 0.08 SIDE_CHAIN REMARK 500 3 DC C 144 0.06 SIDE_CHAIN REMARK 500 3 DC C 145 0.07 SIDE_CHAIN REMARK 500 3 DG C 151 0.07 SIDE_CHAIN REMARK 500 3 TYR A 18 0.15 SIDE_CHAIN REMARK 500 3 ARG A 47 0.08 SIDE_CHAIN REMARK 500 3 PHE A 48 0.09 SIDE_CHAIN REMARK 500 4 DG B 129 0.07 SIDE_CHAIN REMARK 500 4 DG B 133 0.07 SIDE_CHAIN REMARK 500 4 DC B 135 0.06 SIDE_CHAIN REMARK 500 4 DG C 143 0.06 SIDE_CHAIN REMARK 500 4 DG C 151 0.08 SIDE_CHAIN REMARK 500 4 TYR A 18 0.12 SIDE_CHAIN REMARK 500 4 PHE A 48 0.08 SIDE_CHAIN REMARK 500 5 DG B 127 0.06 SIDE_CHAIN REMARK 500 5 DG B 128 0.08 SIDE_CHAIN REMARK 500 5 DG B 129 0.11 SIDE_CHAIN REMARK 500 5 DG B 130 0.08 SIDE_CHAIN REMARK 500 5 DG C 151 0.07 SIDE_CHAIN REMARK 500 5 TYR A 18 0.14 SIDE_CHAIN REMARK 500 5 PHE A 48 0.08 SIDE_CHAIN REMARK 500 5 ARG A 56 0.09 SIDE_CHAIN REMARK 500 6 DG B 128 0.08 SIDE_CHAIN REMARK 500 6 DC C 144 0.07 SIDE_CHAIN REMARK 500 6 TYR A 18 0.10 SIDE_CHAIN REMARK 500 6 PHE A 41 0.08 SIDE_CHAIN REMARK 500 7 DG C 143 0.09 SIDE_CHAIN REMARK 500 7 TYR A 18 0.15 SIDE_CHAIN REMARK 500 7 ARG A 87 0.09 SIDE_CHAIN REMARK 500 8 DG B 127 0.06 SIDE_CHAIN REMARK 500 8 DG B 129 0.06 SIDE_CHAIN REMARK 500 8 DG B 133 0.07 SIDE_CHAIN REMARK 500 8 DG C 151 0.09 SIDE_CHAIN REMARK 500 8 TYR A 18 0.13 SIDE_CHAIN REMARK 500 8 HIS A 57 0.08 SIDE_CHAIN REMARK 500 8 HIS A 61 0.10 SIDE_CHAIN REMARK 500 9 DG B 127 0.06 SIDE_CHAIN REMARK 500 9 DG B 129 0.06 SIDE_CHAIN REMARK 500 9 DT B 134 0.08 SIDE_CHAIN REMARK 500 9 DG C 140 0.07 SIDE_CHAIN REMARK 500 9 TYR A 18 0.10 SIDE_CHAIN REMARK 500 9 PHE A 48 0.08 SIDE_CHAIN REMARK 500 9 ARG A 56 0.08 SIDE_CHAIN REMARK 500 9 ARG A 60 0.08 SIDE_CHAIN REMARK 500 9 ARG A 98 0.09 SIDE_CHAIN REMARK 500 10 DG B 129 0.08 SIDE_CHAIN REMARK 500 10 DG C 143 0.06 SIDE_CHAIN REMARK 500 10 DG C 151 0.07 SIDE_CHAIN REMARK 500 10 TYR A 18 0.10 SIDE_CHAIN REMARK 500 10 ARG A 74 0.09 SIDE_CHAIN REMARK 500 11 DG B 127 0.06 SIDE_CHAIN REMARK 500 11 DG B 129 0.07 SIDE_CHAIN REMARK 500 11 DG B 130 0.05 SIDE_CHAIN REMARK 500 11 DC B 135 0.07 SIDE_CHAIN REMARK 500 11 DT B 136 0.08 SIDE_CHAIN REMARK 500 11 DG C 140 0.07 SIDE_CHAIN REMARK 500 11 DC C 145 0.07 SIDE_CHAIN REMARK 500 11 DG C 149 0.06 SIDE_CHAIN REMARK 500 11 TYR A 18 0.09 SIDE_CHAIN REMARK 500 12 DG B 131 0.07 SIDE_CHAIN REMARK 500 12 DA C 141 0.06 SIDE_CHAIN REMARK 500 12 DG C 143 0.06 SIDE_CHAIN REMARK 500 12 DG C 151 0.06 SIDE_CHAIN REMARK 500 12 TYR A 18 0.11 SIDE_CHAIN REMARK 500 12 PHE A 48 0.08 SIDE_CHAIN REMARK 500 12 ARG A 74 0.10 SIDE_CHAIN REMARK 500 13 DG B 127 0.06 SIDE_CHAIN REMARK 500 13 TYR A 18 0.10 SIDE_CHAIN REMARK 500 14 DG B 131 0.06 SIDE_CHAIN REMARK 500 14 DT B 136 0.07 SIDE_CHAIN REMARK 500 14 DG B 137 0.07 SIDE_CHAIN REMARK 500 14 DA C 139 0.06 SIDE_CHAIN REMARK 500 14 DG C 143 0.08 SIDE_CHAIN REMARK 500 14 DG C 149 0.06 SIDE_CHAIN REMARK 500 14 DC C 150 0.07 SIDE_CHAIN REMARK 500 14 TYR A 18 0.12 SIDE_CHAIN REMARK 500 15 DG B 127 0.07 SIDE_CHAIN REMARK 500 15 DG B 128 0.07 SIDE_CHAIN REMARK 500 15 DG B 130 0.07 SIDE_CHAIN REMARK 500 15 DG C 140 0.06 SIDE_CHAIN REMARK 500 15 TYR A 18 0.13 SIDE_CHAIN REMARK 500 16 DG B 137 0.08 SIDE_CHAIN REMARK 500 16 DG C 140 0.08 SIDE_CHAIN REMARK 500 16 TYR A 18 0.14 SIDE_CHAIN REMARK 500 16 ARG A 47 0.08 SIDE_CHAIN REMARK 500 16 ARG A 56 0.08 SIDE_CHAIN REMARK 500 16 ARG A 78 0.08 SIDE_CHAIN REMARK 500 17 DG B 127 0.06 SIDE_CHAIN REMARK 500 17 TYR A 18 0.10 SIDE_CHAIN REMARK 500 17 TYR A 37 0.07 SIDE_CHAIN REMARK 500 17 PHE A 41 0.08 SIDE_CHAIN REMARK 500 17 ARG A 47 0.09 SIDE_CHAIN REMARK 500 17 PHE A 48 0.09 SIDE_CHAIN REMARK 500 18 DG B 129 0.06 SIDE_CHAIN REMARK 500 18 DG B 131 0.06 SIDE_CHAIN REMARK 500 18 DG C 140 0.06 SIDE_CHAIN REMARK 500 18 DG C 143 0.07 SIDE_CHAIN REMARK 500 18 DG C 151 0.07 SIDE_CHAIN REMARK 500 18 TYR A 18 0.10 SIDE_CHAIN REMARK 500 18 PHE A 48 0.08 SIDE_CHAIN REMARK 500 19 DC B 124 0.09 SIDE_CHAIN REMARK 500 19 TYR A 18 0.12 SIDE_CHAIN REMARK 500 19 ARG A 29 0.08 SIDE_CHAIN REMARK 500 19 PHE A 48 0.08 SIDE_CHAIN REMARK 500 19 ARG A 78 0.08 SIDE_CHAIN REMARK 500 20 DG B 129 0.07 SIDE_CHAIN REMARK 500 20 TYR A 18 0.10 SIDE_CHAIN REMARK 500 20 ARG A 98 0.10 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 131 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 9 SG REMARK 620 2 CYS A 14 SG 113.6 REMARK 620 3 HIS A 27 NE2 109.5 111.2 REMARK 620 4 HIS A 31 NE2 106.0 112.1 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 132 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 39 SG REMARK 620 2 CYS A 44 SG 105.6 REMARK 620 3 HIS A 57 NE2 110.0 119.9 REMARK 620 4 HIS A 61 NE2 116.8 106.8 98.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 133 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 69 SG REMARK 620 2 CYS A 72 SG 110.9 REMARK 620 3 HIS A 85 NE2 107.1 111.2 REMARK 620 4 HIS A 89 NE2 114.6 107.1 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 134 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 102 SG 118.6 REMARK 620 3 HIS A 115 NE2 107.0 106.3 REMARK 620 4 HIS A 119 NE2 116.1 111.1 94.1 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 131 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 132 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 133 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 134
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PRT RELATED DB: PDB REMARK 900 RELATED ID: 2JP9 RELATED DB: PDB REMARK 900 RELATED ID: 15533 RELATED DB: BMRB
DBREF 2JPA A 2 119 UNP Q4VXV4 Q4VXV4_HUMAN 174 291 DBREF 2JPA B 124 137 PDB 2JPA 2JPA 124 137 DBREF 2JPA C 138 151 PDB 2JPA 2JPA 138 151
SEQADV 2JPA ALA A 1 UNP Q4VXV4 EXPRESSION TAG
SEQRES 1 A 119 ALA SER GLU LYS ARG PRO PHE MET CYS ALA TYR PRO GLY SEQRES 2 A 119 CYS ASN LYS ARG TYR PHE LYS LEU SER HIS LEU GLN MET SEQRES 3 A 119 HIS SER ARG LYS HIS THR GLY GLU LYS PRO TYR GLN CYS SEQRES 4 A 119 ASP PHE LYS ASP CYS GLU ARG ARG PHE SER ARG SER ASP SEQRES 5 A 119 GLN LEU LYS ARG HIS GLN ARG ARG HIS THR GLY VAL LYS SEQRES 6 A 119 PRO PHE GLN CYS LYS THR CYS GLN ARG LYS PHE SER ARG SEQRES 7 A 119 SER ASP HIS LEU LYS THR HIS THR ARG THR HIS THR GLY SEQRES 8 A 119 GLU LYS PRO PHE SER CYS ARG TRP PRO SER CYS GLN LYS SEQRES 9 A 119 LYS PHE ALA ARG SER ASP GLU LEU VAL ARG HIS HIS ASN SEQRES 10 A 119 MET HIS SEQRES 1 B 14 DC DG DC DG DG DG DG DG DC DG DT DC DT SEQRES 2 B 14 DG SEQRES 1 C 14 DC DA DG DA DC DG DC DC DC DC DC DG DC SEQRES 2 C 14 DG
HET ZN A 131 1 HET ZN A 132 1 HET ZN A 133 1 HET ZN A 134 1
HETNAM ZN ZINC ION
FORMUL 4 ZN 4(ZN 2+)
HELIX 1 1 LYS A 20 GLY A 33 1 14 HELIX 2 2 ARG A 50 GLY A 63 1 14 HELIX 3 3 ARG A 78 GLY A 91 1 14 HELIX 4 4 ARG A 108 MET A 118 1 11
SHEET 1 A 2 PHE A 7 MET A 8 0 SHEET 2 A 2 ARG A 17 TYR A 18 -1 O TYR A 18 N PHE A 7 SHEET 1 B 2 TYR A 37 GLN A 38 0 SHEET 2 B 2 ARG A 47 PHE A 48 -1 O PHE A 48 N TYR A 37 SHEET 1 C 2 PHE A 67 GLN A 68 0 SHEET 2 C 2 LYS A 75 PHE A 76 -1 O PHE A 76 N PHE A 67 SHEET 1 D 2 PHE A 95 SER A 96 0 SHEET 2 D 2 LYS A 105 PHE A 106 -1 O PHE A 106 N PHE A 95
LINK SG CYS A 9 ZN ZN A 131 1555 1555 2.29 LINK SG CYS A 14 ZN ZN A 131 1555 1555 2.29 LINK NE2 HIS A 27 ZN ZN A 131 1555 1555 2.06 LINK NE2 HIS A 31 ZN ZN A 131 1555 1555 2.07 LINK SG CYS A 39 ZN ZN A 132 1555 1555 2.29 LINK SG CYS A 44 ZN ZN A 132 1555 1555 2.29 LINK NE2 HIS A 57 ZN ZN A 132 1555 1555 2.08 LINK NE2 HIS A 61 ZN ZN A 132 1555 1555 2.08 LINK SG CYS A 69 ZN ZN A 133 1555 1555 2.28 LINK SG CYS A 72 ZN ZN A 133 1555 1555 2.26 LINK NE2 HIS A 85 ZN ZN A 133 1555 1555 2.06 LINK NE2 HIS A 89 ZN ZN A 133 1555 1555 2.07 LINK SG CYS A 97 ZN ZN A 134 1555 1555 2.27 LINK SG CYS A 102 ZN ZN A 134 1555 1555 2.27 LINK NE2 HIS A 115 ZN ZN A 134 1555 1555 2.03 LINK NE2 HIS A 119 ZN ZN A 134 1555 1555 2.05
SITE 1 AC1 4 CYS A 9 CYS A 14 HIS A 27 HIS A 31 SITE 1 AC2 4 CYS A 39 CYS A 44 HIS A 57 HIS A 61 SITE 1 AC3 4 CYS A 69 CYS A 72 HIS A 85 HIS A 89 SITE 1 AC4 4 CYS A 97 CYS A 102 HIS A 115 HIS A 119
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000