10 20 30 40 50 60 70 80 2JOZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID BINDING PROTEIN 10-APR-07 2JOZ
TITLE SOLUTION NMR STRUCTURE OF PROTEIN YXEF, NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET SR500A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YXEF; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YXEF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21
KEYWDS NMR, STRUCTURE, GFT, NESG, LIPOPROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, LIPID BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Y.WU,G.LIU,Q.ZHANG,S.BHATNAGAR,C.CHEN,C.NWOSU,R.XIAO, AUTHOR 2 K.CUNNINGHAM,J.LOCKE,L.MA,G.SWAPNA,M.BARAN,T.ACTON, AUTHOR 3 G.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (NESG)
REVDAT 2 24-FEB-09 2JOZ 1 VERSN REVDAT 1 15-MAY-07 2JOZ 0
JRNL AUTH Y.WU,G.LIU,Q.ZHANG,S.BHATNAGAR,C.CHEN,C.NWOSU, JRNL AUTH 2 R.XIAO,K.CUNNINGHAM,J.LOCKE,L.MA,G.SWAPNA,M.BARAN, JRNL AUTH 3 T.ACTON,G.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF PROTEIN YXEF , NORTHEAST JRNL TITL 2 STRUCTURAL GENOMICS CONSORTIUM TARGET SR500A JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JOZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB100107.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 95% H2O/5% D2O; 1 MM REMARK 210 [U-10% 13C; U-100% 15N] REMARK 210 PROTEIN, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4,3D, GFT HNNCABCA, 4,3D, GFT REMARK 210 CABCACONNH, 4,3D, GFT HCCH REMARK 210 COSY, 3D, 15N-13C RESOLVED REMARK 210 SIMULTANIOUS NOESY, 3D HNCO, REMARK 210 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, NMRPIPE 9.0, REMARK 210 AUTOSTRUCTURE 1.0, XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 7 -59.35 -140.96 REMARK 500 1 GLN A 8 -167.07 64.08 REMARK 500 1 PRO A 29 -163.00 -61.16 REMARK 500 1 GLU A 42 -70.19 -44.33 REMARK 500 1 ASP A 72 90.45 -169.95 REMARK 500 1 ASN A 95 -55.44 71.81 REMARK 500 1 THR A 116 46.45 -77.32 REMARK 500 1 HIS A 130 23.69 -140.91 REMARK 500 2 ALA A 26 148.75 75.42 REMARK 500 2 PRO A 29 154.32 -48.19 REMARK 500 2 SER A 35 159.57 176.90 REMARK 500 2 ASP A 72 70.06 -151.98 REMARK 500 2 PRO A 85 -1.33 9.42 REMARK 500 2 LEU A 128 37.69 -86.17 REMARK 500 3 CYS A 7 143.21 -170.57 REMARK 500 3 GLN A 10 -169.53 -125.34 REMARK 500 3 ARG A 25 -167.23 -116.17 REMARK 500 3 ASP A 31 -63.34 -128.94 REMARK 500 3 SER A 74 168.54 67.24 REMARK 500 3 TYR A 84 170.07 -59.06 REMARK 500 3 PRO A 85 -0.53 11.96 REMARK 500 3 ASN A 103 -53.83 75.80 REMARK 500 3 LYS A 115 84.15 64.38 REMARK 500 3 GLU A 120 -82.18 -159.45 REMARK 500 3 LYS A 121 131.40 69.06 REMARK 500 4 GLU A 23 48.44 -90.51 REMARK 500 4 ALA A 26 164.16 68.92 REMARK 500 4 ASP A 72 76.31 -152.35 REMARK 500 4 LEU A 80 -170.06 50.74 REMARK 500 4 ASN A 103 18.16 59.46 REMARK 500 4 LYS A 121 17.84 59.08 REMARK 500 4 HIS A 132 -10.23 -157.01 REMARK 500 4 HIS A 133 -80.10 69.84 REMARK 500 4 HIS A 134 -51.26 -169.02 REMARK 500 5 MET A 3 85.74 64.89 REMARK 500 5 SER A 5 -175.96 64.73 REMARK 500 5 GLN A 8 168.11 68.14 REMARK 500 5 GLU A 12 -88.18 -88.83 REMARK 500 5 THR A 14 129.33 73.53 REMARK 500 5 ALA A 26 79.07 -119.58 REMARK 500 5 ASP A 31 84.03 69.20 REMARK 500 5 ARG A 54 -62.74 -93.21 REMARK 500 5 ASP A 72 78.59 -161.29 REMARK 500 5 SER A 114 172.55 68.86 REMARK 500 5 GLU A 120 -71.50 -152.67 REMARK 500 5 LYS A 121 107.53 61.21 REMARK 500 5 GLU A 123 122.94 72.31 REMARK 500 5 LYS A 126 72.17 -108.70 REMARK 500 5 SER A 127 100.03 -173.40 REMARK 500 6 GLN A 9 -95.96 -129.82 REMARK 500 6 GLN A 10 120.00 165.22 REMARK 500 6 THR A 14 130.89 70.63 REMARK 500 6 ALA A 26 145.24 70.71 REMARK 500 6 ASP A 72 80.44 -152.76 REMARK 500 6 TYR A 84 -179.31 -60.10 REMARK 500 6 PRO A 85 -0.85 12.76 REMARK 500 6 SER A 114 -159.17 60.48 REMARK 500 6 THR A 116 165.13 64.67 REMARK 500 6 GLU A 129 123.45 -175.85 REMARK 500 7 ILE A 2 82.42 65.78 REMARK 500 7 GLN A 10 68.49 -178.32 REMARK 500 7 ALA A 26 160.71 66.60 REMARK 500 7 ARG A 54 -63.96 -93.90 REMARK 500 7 PRO A 85 -1.25 5.06 REMARK 500 7 ASN A 95 -7.42 75.51 REMARK 500 7 LYS A 115 63.99 -112.25 REMARK 500 7 LYS A 126 -74.58 70.15 REMARK 500 8 ILE A 2 96.44 68.15 REMARK 500 8 GLN A 8 -138.58 -104.97 REMARK 500 8 GLN A 9 35.81 70.07 REMARK 500 8 THR A 14 124.33 72.71 REMARK 500 8 ALA A 26 142.77 65.81 REMARK 500 8 THR A 30 -21.14 75.60 REMARK 500 8 ASP A 43 19.55 -141.29 REMARK 500 8 ARG A 54 -68.36 -98.71 REMARK 500 8 THR A 71 -38.71 73.77 REMARK 500 8 SER A 114 57.70 -99.68 REMARK 500 9 PRO A 15 90.47 -68.82 REMARK 500 9 ALA A 26 156.75 71.43 REMARK 500 9 SER A 74 -178.54 60.96 REMARK 500 9 PRO A 85 -0.56 5.18 REMARK 500 9 GLU A 120 172.84 65.80 REMARK 500 9 LYS A 121 130.55 -173.37 REMARK 500 9 ASP A 122 -150.50 -118.97 REMARK 500 9 GLU A 123 88.19 69.90 REMARK 500 9 HIS A 130 117.72 -175.42 REMARK 500 9 HIS A 133 -80.79 -141.49 REMARK 500 9 HIS A 134 -60.91 66.16 REMARK 500 10 SER A 5 34.61 -81.24 REMARK 500 10 LYS A 11 -70.26 69.89 REMARK 500 10 GLU A 12 -71.43 67.19 REMARK 500 10 ARG A 25 149.80 -170.44 REMARK 500 10 THR A 71 -35.40 75.15 REMARK 500 10 PRO A 85 -0.90 9.28 REMARK 500 10 ASN A 103 -7.46 67.26 REMARK 500 10 GLU A 113 93.65 -68.65 REMARK 500 10 GLU A 120 100.63 67.83 REMARK 500 11 GLN A 8 61.76 -110.22 REMARK 500 11 ALA A 26 144.71 74.74 REMARK 500 11 PRO A 29 128.11 -38.35 REMARK 500 11 SER A 35 -178.95 175.67 REMARK 500 11 ASP A 43 27.09 -148.42 REMARK 500 11 ASN A 103 -68.12 68.38 REMARK 500 12 MET A 3 -49.37 -133.71 REMARK 500 12 GLN A 8 132.92 70.02 REMARK 500 12 GLN A 10 -64.88 -105.04 REMARK 500 12 GLU A 12 29.09 -76.71 REMARK 500 12 ARG A 25 149.72 -170.89 REMARK 500 12 ALA A 26 144.76 69.39 REMARK 500 12 PRO A 29 150.62 -45.60 REMARK 500 12 ARG A 54 -62.30 -99.52 REMARK 500 12 LEU A 80 -162.52 52.29 REMARK 500 12 PRO A 85 -1.48 10.91 REMARK 500 12 HIS A 130 96.67 68.52 REMARK 500 13 ILE A 2 89.22 64.77 REMARK 500 13 VAL A 4 72.60 61.89 REMARK 500 13 GLN A 8 -167.56 -108.98 REMARK 500 13 ALA A 26 143.67 65.01 REMARK 500 13 TYR A 84 -177.30 -63.00 REMARK 500 13 PRO A 85 -0.79 12.32 REMARK 500 13 GLU A 119 -169.55 64.76 REMARK 500 13 GLU A 120 101.46 67.92 REMARK 500 13 HIS A 134 157.60 67.37 REMARK 500 14 GLU A 12 -156.67 -97.20 REMARK 500 14 GLU A 13 -156.75 -143.63 REMARK 500 14 THR A 14 123.42 72.12 REMARK 500 14 GLU A 23 78.04 -101.64 REMARK 500 14 ALA A 26 146.83 72.65 REMARK 500 14 PRO A 29 145.54 -38.38 REMARK 500 14 ARG A 54 -60.01 -104.26 REMARK 500 14 PRO A 85 -0.30 11.50 REMARK 500 14 ARG A 118 84.22 56.96 REMARK 500 15 VAL A 4 -72.10 -85.01 REMARK 500 15 GLN A 10 -74.68 -116.52 REMARK 500 15 ALA A 26 165.36 67.43 REMARK 500 15 ASP A 43 19.43 -151.37 REMARK 500 15 ARG A 54 -74.62 -101.36 REMARK 500 15 TYR A 84 170.81 -58.47 REMARK 500 15 PRO A 85 0.01 9.34 REMARK 500 15 ASN A 95 -66.14 71.89 REMARK 500 15 LYS A 115 36.44 -94.55 REMARK 500 15 GLU A 119 99.56 -62.83 REMARK 500 15 HIS A 134 -82.64 170.37 REMARK 500 16 ALA A 26 161.45 72.32 REMARK 500 16 ARG A 54 -51.77 -125.01 REMARK 500 16 ASP A 72 -27.46 -146.41 REMARK 500 16 PRO A 85 -0.80 8.13 REMARK 500 16 ASN A 95 -157.96 66.22 REMARK 500 16 ASN A 103 -43.16 72.99 REMARK 500 16 GLU A 120 149.33 72.10 REMARK 500 17 LYS A 11 -78.18 70.15 REMARK 500 17 GLU A 12 143.44 -172.10 REMARK 500 17 ALA A 26 144.59 73.19 REMARK 500 17 ARG A 54 -75.61 -92.81 REMARK 500 17 ASP A 72 89.87 -165.63 REMARK 500 17 TYR A 83 31.18 -99.88 REMARK 500 17 TYR A 84 173.48 -59.70 REMARK 500 17 PRO A 85 -0.84 11.65 REMARK 500 17 ASN A 103 -5.09 69.63 REMARK 500 17 HIS A 132 104.63 68.06 REMARK 500 18 VAL A 4 111.60 68.89 REMARK 500 18 GLN A 9 34.50 -90.89 REMARK 500 18 GLU A 23 40.80 -96.10 REMARK 500 18 ALA A 26 155.49 68.71 REMARK 500 18 ASN A 95 -165.15 -109.16 REMARK 500 18 ARG A 118 84.33 -151.25 REMARK 500 18 GLU A 120 150.38 66.06 REMARK 500 18 GLU A 123 -74.42 -80.99 REMARK 500 18 HIS A 134 117.94 -160.39 REMARK 500 19 GLN A 8 80.83 -153.54 REMARK 500 19 ALA A 26 158.94 64.23 REMARK 500 19 PRO A 29 157.32 -42.41 REMARK 500 19 TYR A 84 -176.19 -66.23 REMARK 500 19 PRO A 85 -3.09 2.98 REMARK 500 19 SER A 114 105.28 65.93 REMARK 500 19 GLU A 119 84.53 -160.58 REMARK 500 19 GLU A 123 104.55 -161.49 REMARK 500 19 HIS A 134 -90.13 62.82 REMARK 500 20 PRO A 29 161.62 -49.05 REMARK 500 20 ASP A 72 -10.07 -143.16 REMARK 500 20 TYR A 83 40.72 -105.64 REMARK 500 20 ASN A 95 -153.09 65.06 REMARK 500 20 SER A 114 107.04 -171.26 REMARK 500 20 THR A 116 129.01 71.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 84 PRO A 85 2 -148.34 REMARK 500 TYR A 84 PRO A 85 3 -149.33 REMARK 500 TYR A 84 PRO A 85 6 -149.38 REMARK 500 TYR A 84 PRO A 85 7 -148.48 REMARK 500 TYR A 84 PRO A 85 9 -148.43 REMARK 500 TYR A 84 PRO A 85 12 -142.16 REMARK 500 TYR A 84 PRO A 85 13 -148.10 REMARK 500 TYR A 84 PRO A 85 19 -138.23 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15211 RELATED DB: BMRB REMARK 900 RELATED ID: SR500A RELATED DB: TARGETDB
DBREF 2JOZ A 2 127 UNP P54945 YXEF_BACSU 19 144
SEQADV 2JOZ MET A 1 UNP P54945 INITIATING METHIONINE SEQADV 2JOZ LEU A 128 UNP P54945 CLONING ARTIFACT SEQADV 2JOZ GLU A 129 UNP P54945 CLONING ARTIFACT SEQADV 2JOZ HIS A 130 UNP P54945 EXPRESSION TAG SEQADV 2JOZ HIS A 131 UNP P54945 EXPRESSION TAG SEQADV 2JOZ HIS A 132 UNP P54945 EXPRESSION TAG SEQADV 2JOZ HIS A 133 UNP P54945 EXPRESSION TAG SEQADV 2JOZ HIS A 134 UNP P54945 EXPRESSION TAG SEQADV 2JOZ HIS A 135 UNP P54945 EXPRESSION TAG
SEQRES 1 A 135 MET ILE MET VAL SER GLY CYS GLN GLN GLN LYS GLU GLU SEQRES 2 A 135 THR PRO PHE TYR TYR GLY THR TRP ASP GLU GLY ARG ALA SEQRES 3 A 135 PRO GLY PRO THR ASP GLY VAL LYS SER ALA THR VAL THR SEQRES 4 A 135 PHE THR GLU ASP GLU VAL VAL GLU THR GLU VAL MET GLU SEQRES 5 A 135 GLY ARG GLY GLU VAL GLN LEU PRO PHE MET ALA TYR LYS SEQRES 6 A 135 VAL ILE SER GLN SER THR ASP GLY SER ILE GLU ILE GLN SEQRES 7 A 135 TYR LEU GLY PRO TYR TYR PRO LEU LYS SER THR LEU LYS SEQRES 8 A 135 ARG GLY GLU ASN GLY THR LEU ILE TRP GLU GLN ASN GLY SEQRES 9 A 135 GLN ARG LYS THR MET THR ARG ILE GLU SER LYS THR GLY SEQRES 10 A 135 ARG GLU GLU LYS ASP GLU LYS SER LYS SER LEU GLU HIS SEQRES 11 A 135 HIS HIS HIS HIS HIS
SHEET 1 A10 GLY A 55 GLN A 58 0 SHEET 2 A10 GLU A 44 MET A 51 -1 N MET A 51 O GLY A 55 SHEET 3 A10 MET A 62 SER A 68 -1 O MET A 62 N VAL A 45 SHEET 4 A10 SER A 74 LEU A 80 -1 O GLU A 76 N SER A 68 SHEET 5 A10 LYS A 87 ARG A 92 -1 O SER A 88 N ILE A 77 SHEET 6 A10 LEU A 98 GLN A 102 -1 O ILE A 99 N LYS A 91 SHEET 7 A10 GLN A 105 ARG A 111 -1 O MET A 109 N LEU A 98 SHEET 8 A10 GLY A 19 ASP A 22 -1 N ASP A 22 O THR A 110 SHEET 9 A10 SER A 35 PHE A 40 -1 O VAL A 38 N TRP A 21 SHEET 10 A10 GLU A 44 MET A 51 -1 O THR A 48 N THR A 37
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000