10 20 30 40 50 60 70 80 2JOO - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER BLOOD CLOTTING 14-MAR-07 2JOO
TITLE THE NMR SOLUTION STRUCTURE OF RECOMBINANT RGD-HIRUDIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIRUDIN VARIANT-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LEPIRUDIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIRUDO MEDICINALIS; SOURCE 3 ORGANISM_COMMON: MEDICINAL LEECH; SOURCE 4 ORGANISM_TAXID: 6421; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922
KEYWDS MAINLY BETA, BLOOD CLOTTING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR X.SONG,W.MO,X.LIU,X.YAN,H.SONG,L.DAI
REVDAT 2 24-FEB-09 2JOO 1 VERSN REVDAT 1 18-MAR-08 2JOO 0
JRNL AUTH X.SONG,W.MO,X.LIU,L.ZHU,X.YAN,H.SONG,L.DAI JRNL TITL THE NMR SOLUTION STRUCTURE OF RECOMBINANT JRNL TITL 2 RGD-HIRUDIN JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 360 103 2007 JRNL REFN ISSN 0006-291X JRNL PMID 17585879 JRNL DOI 10.1016/J.BBRC.2007.06.014
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.0 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JOO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB100096.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5 MM RGD-HIRUDIN, 0.02MOL/L REMARK 210 NA2HPO4/NAH2PO4 BUFFER, PH REMARK 210 7.0, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY, 2D 1H-1H REMARK 210 NOESY, 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : CLOSEST TO THE AVERAGE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ASN A 52 REMARK 465 GLN A 53 REMARK 465 GLY A 54 REMARK 465 ASP A 55 REMARK 465 PHE A 56 REMARK 465 GLU A 57 REMARK 465 PRO A 58 REMARK 465 ILE A 59 REMARK 465 PRO A 60 REMARK 465 GLU A 61 REMARK 465 ASP A 62 REMARK 465 ALA A 63 REMARK 465 TYR A 64 REMARK 465 ASP A 65 REMARK 465 GLU A 66
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 12 -59.26 -127.61 REMARK 500 1 LEU A 13 59.50 -60.64 REMARK 500 1 CYS A 16 -72.87 -86.56 REMARK 500 1 SER A 35 53.55 -99.58 REMARK 500 1 GLN A 49 -28.18 -151.47 REMARK 500 2 THR A 4 -159.33 -121.91 REMARK 500 2 ASN A 12 -60.02 -129.23 REMARK 500 2 LEU A 13 60.65 -59.66 REMARK 500 2 CYS A 16 -79.42 -98.12 REMARK 500 2 ARG A 32 79.82 -154.09 REMARK 500 2 GLN A 49 -55.66 -164.07 REMARK 500 3 ASN A 12 -57.38 -134.31 REMARK 500 3 LEU A 13 59.20 -63.26 REMARK 500 3 CYS A 16 -77.83 -74.16 REMARK 500 3 ASN A 37 80.08 -153.87 REMARK 500 3 GLN A 49 -38.59 -139.02 REMARK 500 4 VAL A 2 76.03 -100.04 REMARK 500 4 ASN A 12 -58.19 -135.62 REMARK 500 4 LEU A 13 60.56 -61.75 REMARK 500 4 CYS A 16 -74.93 -82.34 REMARK 500 5 ASN A 12 -61.85 -126.79 REMARK 500 5 LEU A 13 63.04 -58.99 REMARK 500 5 CYS A 16 -77.55 -61.30 REMARK 500 5 ASN A 37 82.28 -153.41 REMARK 500 5 GLN A 49 -33.87 -133.38 REMARK 500 6 ASN A 12 -58.00 -134.93 REMARK 500 6 LEU A 13 61.81 -58.16 REMARK 500 6 CYS A 16 -74.49 -73.79 REMARK 500 6 SER A 35 30.65 -90.73 REMARK 500 7 THR A 4 -167.89 -125.40 REMARK 500 7 ASN A 12 -55.20 -159.04 REMARK 500 7 LEU A 13 61.34 -60.80 REMARK 500 7 CYS A 16 -65.04 -92.65 REMARK 500 7 SER A 35 37.29 -91.64 REMARK 500 7 ASN A 37 75.28 -155.10 REMARK 500 7 SER A 50 -92.57 -102.98 REMARK 500 8 VAL A 2 79.89 -112.62 REMARK 500 8 THR A 4 -159.88 -134.91 REMARK 500 8 ASN A 12 -57.12 -136.77 REMARK 500 8 LEU A 13 61.39 -59.55 REMARK 500 8 CYS A 16 -70.85 -94.57 REMARK 500 8 ARG A 32 114.46 -169.26 REMARK 500 8 ASP A 34 48.75 -98.43 REMARK 500 8 ASN A 37 81.71 -154.70 REMARK 500 9 ASN A 12 -59.24 -132.74 REMARK 500 9 LEU A 13 61.47 -60.29 REMARK 500 9 CYS A 16 -70.72 -60.66 REMARK 500 9 LYS A 36 -32.50 -135.37 REMARK 500 9 ASN A 37 77.70 -155.64 REMARK 500 9 GLN A 49 -66.23 -150.25 REMARK 500 10 ASN A 12 -57.28 -133.79 REMARK 500 10 LEU A 13 60.58 -61.47 REMARK 500 10 CYS A 16 -73.17 -66.28 REMARK 500 10 LYS A 36 -38.21 -132.71 REMARK 500 10 GLN A 49 -69.86 -160.94 REMARK 500 10 SER A 50 63.19 -112.60 REMARK 500 11 THR A 4 -157.54 -151.32 REMARK 500 11 ASN A 12 -56.17 -135.66 REMARK 500 11 LEU A 13 63.13 -62.15 REMARK 500 11 CYS A 16 -79.87 -67.87 REMARK 500 11 SER A 35 47.44 -104.88 REMARK 500 11 GLN A 49 -10.77 -148.59 REMARK 500 11 SER A 50 35.17 -151.51 REMARK 500 12 ASN A 12 -55.81 -143.52 REMARK 500 12 LEU A 13 66.04 -61.61 REMARK 500 12 CYS A 16 -80.21 -72.77 REMARK 500 12 GLN A 49 -33.02 -156.97 REMARK 500 13 ASN A 12 -56.74 -136.04 REMARK 500 13 LEU A 13 62.18 -61.83 REMARK 500 13 CYS A 16 -65.90 -98.73 REMARK 500 13 SER A 35 31.86 -93.62 REMARK 500 13 ASN A 37 89.80 -154.93 REMARK 500 13 GLN A 49 -42.23 -142.95 REMARK 500 14 ASN A 12 -57.05 -139.74 REMARK 500 14 LEU A 13 59.43 -62.10 REMARK 500 14 CYS A 16 -73.51 -62.66 REMARK 500 14 GLN A 49 -36.41 -133.35 REMARK 500 15 ASN A 12 -56.73 -145.45 REMARK 500 15 LEU A 13 58.73 -62.67 REMARK 500 15 CYS A 16 -70.48 -89.44 REMARK 500 15 ASN A 37 77.15 -153.82 REMARK 500 15 GLN A 49 -18.64 -176.33 REMARK 500 16 ASN A 12 -55.93 -136.05 REMARK 500 16 LEU A 13 55.89 -61.07 REMARK 500 16 CYS A 16 -77.31 -72.65 REMARK 500 17 ASN A 12 -57.44 -142.41 REMARK 500 17 LEU A 13 61.62 -62.87 REMARK 500 17 ARG A 32 153.79 73.33 REMARK 500 17 LYS A 36 -33.47 -139.66 REMARK 500 17 GLN A 49 -44.01 -155.03 REMARK 500 18 ASN A 12 -55.24 -140.15 REMARK 500 18 LEU A 13 56.24 -62.76 REMARK 500 18 CYS A 16 -71.34 -89.47 REMARK 500 18 SER A 35 30.58 -94.38 REMARK 500 19 ASN A 12 -57.29 -143.47 REMARK 500 19 LEU A 13 56.62 -62.35 REMARK 500 19 CYS A 16 -78.04 -57.20 REMARK 500 19 GLN A 49 -54.96 -168.89 REMARK 500 19 SER A 50 -57.83 -146.25 REMARK 500 20 ASN A 12 -54.14 -148.81 REMARK 500 20 LEU A 13 65.95 -60.55 REMARK 500 20 CYS A 16 -78.48 -74.85 REMARK 500 20 SER A 35 30.11 -94.58 REMARK 500 20 GLN A 49 -37.29 -132.46 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2JOO A 1 66 UNP P01050 ITH1_HIRME 1 65
SEQADV 2JOO ARG A 32 UNP P01050 SER 32 ENGINEERED SEQADV 2JOO GLY A 33 UNP P01050 ASP 33 ENGINEERED SEQADV 2JOO ASP A 34 UNP P01050 GLY 34 ENGINEERED SEQADV 2JOO SER A 35 UNP P01050 GLU 35 ENGINEERED SEQADV 2JOO GLN A 53 UNP P01050 ASP 53 ENGINEERED SEQADV 2JOO PRO A 58 UNP P01050 GLU 58 ENGINEERED SEQADV 2JOO ASP A 62 UNP P01050 GLU 62 ENGINEERED SEQADV 2JOO ALA A 63 UNP P01050 TYR 63 ENGINEERED SEQADV 2JOO TYR A 64 UNP P01050 LEU 64 ENGINEERED SEQADV 2JOO ASP A 65 UNP P01050 GLN 65 ENGINEERED SEQADV 2JOO GLU A 66 UNP P01050 EXPRESSION TAG
SEQRES 1 A 66 VAL VAL TYR THR ASP CYS THR GLU SER GLY GLN ASN LEU SEQRES 2 A 66 CYS LEU CYS GLU GLY SER ASN VAL CYS GLY GLN GLY ASN SEQRES 3 A 66 LYS CYS ILE LEU GLY ARG GLY ASP SER LYS ASN GLN CYS SEQRES 4 A 66 VAL THR GLY GLU GLY THR PRO LYS PRO GLN SER HIS ASN SEQRES 5 A 66 GLN GLY ASP PHE GLU PRO ILE PRO GLU ASP ALA TYR ASP SEQRES 6 A 66 GLU
SHEET 1 A 2 ASN A 26 ILE A 29 0 SHEET 2 A 2 GLN A 38 THR A 41 -1 O VAL A 40 N LYS A 27
SSBOND 1 CYS A 6 CYS A 14 1555 1555 2.88 SSBOND 2 CYS A 16 CYS A 28 1555 1555 2.83 SSBOND 3 CYS A 22 CYS A 39 1555 1555 2.83
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000