10 20 30 40 50 60 70 80 2JOE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-MAR-07 2JOE
TITLE NMR STRUCTURE OF E. COLI YEHR PROTEIN. NORTHEAST STRUCTURAL TITLE 2 GENOMICS TARGET ER538.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL LIPOPROTEIN YEHR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YEHR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21
KEYWDS SIX ANTIPARALLEL BETA STRANDS, ALPHA + BETA SANDWICH, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 4 FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.DING,T.A.RAMELOT,J.R.CORT,C.X.CHEN,M.JIANG,K.CUNNINGHAM, AUTHOR 2 L.MA,R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA,T.B.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (NESG)
REVDAT 2 24-FEB-09 2JOE 1 VERSN REVDAT 1 10-APR-07 2JOE 0
JRNL AUTH K.DING,T.A.RAMELOT,J.R.CORT,M.JIANG,R.XIAO, JRNL AUTH 2 G.V.T.SWAPNA,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL NMR STRUCTURE OF E. COLI YEHR PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISTANCE GEOMETRY SIMULATED REMARK 3 ANNEALING USING NIH XPLOR, FOLLOWED BY CNS WATER REFINEMENT.
REMARK 4 REMARK 4 2JOE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-07. REMARK 100 THE RCSB ID CODE IS RCSB100086.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 293 REMARK 210 PH : 5.5; 5.5 REMARK 210 IONIC STRENGTH : 100; 100 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM NH4OAC, 100 MM REMARK 210 NACL, 10 MM DTT, 5 MM CACL2, REMARK 210 0.02 % NAN3, 95% H2O/5% D2O; 1 REMARK 210 MM [U-5% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM NH4OAC, 100 MM REMARK 210 NACL, 10 MM DTT, 5 MM CACL2, REMARK 210 0.02 % NAN3, 95% H2O/5% D2O; 1 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 20 MM NH4OAC, 100 MM REMARK 210 NACL, 10 MM DTT, 5 MM CACL2, REMARK 210 0.02 % NAN3, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 3D HNCO, 3D REMARK 210 HNCA, 3D HN(CO)CA, 3D CBCA(CO) REMARK 210 NH, 3D HNCACB, 3D HBHA(CO)NH, REMARK 210 3D HNHA, 3D C(CO)NH, 3D H(CCO) REMARK 210 NH, 3D HCCH-TOCSY, 2D 1H-13C REMARK 210 HSQC, 2D 1H-13C (AROM) HSQC, REMARK 210 2D 1H-15N (NH2) HSQC, 3D 1H- REMARK 210 15N NOESY, 3D 1H-13C (ALIPH) REMARK 210 NOESY, 3D 1H-13C (AROM) NOESY, REMARK 210 4D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ, 600 MHZ, 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH 2.15.0, SPARKY REMARK 210 3.1, NMRPIPE LINUX9, REMARK 210 AUTOSTRUCTURE 2.1.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 NOE AND BOND ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 3 91.95 59.57 REMARK 500 1 ALA A 42 -57.20 70.39 REMARK 500 1 LYS A 64 -93.07 49.05 REMARK 500 1 ASN A 65 42.49 -147.71 REMARK 500 1 ALA A 67 -149.59 -164.14 REMARK 500 1 THR A 76 -65.87 -101.84 REMARK 500 1 ASP A 77 -33.83 -171.47 REMARK 500 1 LYS A 90 15.52 -147.45 REMARK 500 1 ILE A 99 -80.63 -106.63 REMARK 500 1 ASN A 103 31.83 -79.72 REMARK 500 1 LYS A 131 -89.99 61.00 REMARK 500 1 LEU A 132 14.19 -155.97 REMARK 500 2 ASP A 3 -34.74 -132.31 REMARK 500 2 GLU A 5 142.84 179.86 REMARK 500 2 ASN A 15 -56.47 74.56 REMARK 500 2 LYS A 64 22.09 -78.63 REMARK 500 2 ALA A 67 -146.06 47.90 REMARK 500 2 THR A 76 -79.69 -108.59 REMARK 500 2 ASP A 77 -67.70 -147.63 REMARK 500 2 LYS A 90 -62.05 -150.58 REMARK 500 2 VAL A 91 -167.40 51.77 REMARK 500 2 VAL A 104 -72.66 -129.88 REMARK 500 2 LYS A 131 -171.32 69.41 REMARK 500 2 HIS A 134 45.68 -86.28 REMARK 500 2 HIS A 135 -83.88 66.53 REMARK 500 2 HIS A 137 28.12 -142.46 REMARK 500 2 HIS A 138 -65.74 -170.42 REMARK 500 3 LEU A 14 43.12 -102.12 REMARK 500 3 ASN A 15 -56.42 77.13 REMARK 500 3 ILE A 66 -71.52 -98.19 REMARK 500 3 ALA A 67 -146.12 -169.25 REMARK 500 3 THR A 76 -83.80 -104.47 REMARK 500 3 ASP A 77 -59.79 -160.00 REMARK 500 3 LYS A 90 -66.20 -143.30 REMARK 500 3 VAL A 91 -169.98 39.38 REMARK 500 3 THR A 114 -169.50 -117.38 REMARK 500 3 VAL A 130 -44.50 -139.84 REMARK 500 3 LYS A 131 -177.28 61.19 REMARK 500 3 HIS A 135 165.58 68.13 REMARK 500 3 HIS A 137 -81.55 -134.64 REMARK 500 4 ASN A 15 -14.20 71.35 REMARK 500 4 ALA A 61 2.24 -69.21 REMARK 500 4 LYS A 64 -93.07 65.16 REMARK 500 4 ASN A 65 40.14 -149.38 REMARK 500 4 ALA A 67 -145.01 -168.80 REMARK 500 4 ASP A 77 -53.63 178.09 REMARK 500 4 ASP A 108 -64.53 -91.53 REMARK 500 4 LYS A 131 97.11 69.31 REMARK 500 4 GLU A 133 -100.73 -102.46 REMARK 500 4 HIS A 134 -71.72 -153.64 REMARK 500 4 HIS A 135 13.75 178.06 REMARK 500 4 HIS A 136 81.35 49.42 REMARK 500 5 THR A 47 -67.02 -97.20 REMARK 500 5 LYS A 64 -80.43 70.57 REMARK 500 5 ASN A 65 44.04 -157.23 REMARK 500 5 ALA A 67 -147.90 -167.36 REMARK 500 5 ASP A 77 -50.58 177.06 REMARK 500 5 SER A 100 -67.06 -147.08 REMARK 500 5 VAL A 104 -72.95 78.18 REMARK 500 5 LYS A 131 -171.22 67.09 REMARK 500 5 HIS A 135 -78.72 -87.35 REMARK 500 5 HIS A 136 -77.73 -141.70 REMARK 500 5 HIS A 138 -85.71 -98.48 REMARK 500 6 ASN A 15 -32.00 73.65 REMARK 500 6 ASP A 28 68.43 -103.80 REMARK 500 6 PHE A 41 25.30 -75.26 REMARK 500 6 ILE A 66 -72.63 -53.26 REMARK 500 6 THR A 76 -72.52 -79.43 REMARK 500 6 ASP A 77 -46.94 174.00 REMARK 500 6 SER A 100 -57.26 -163.59 REMARK 500 6 LYS A 131 -157.42 59.58 REMARK 500 7 ASP A 3 -70.76 -153.75 REMARK 500 7 LYS A 4 -77.76 -97.24 REMARK 500 7 ASN A 15 -54.28 70.96 REMARK 500 7 ALA A 67 -149.08 -171.86 REMARK 500 7 THR A 76 -77.00 -101.83 REMARK 500 7 ASP A 77 -36.47 -174.16 REMARK 500 7 ILE A 99 -90.37 -128.46 REMARK 500 7 SER A 100 -85.58 60.63 REMARK 500 7 ASP A 108 -67.20 -126.09 REMARK 500 7 GLN A 117 -71.81 -54.94 REMARK 500 7 LYS A 131 -114.20 62.02 REMARK 500 7 LEU A 132 -32.89 168.65 REMARK 500 8 ASP A 3 -52.46 -154.08 REMARK 500 8 LYS A 4 155.03 74.81 REMARK 500 8 LYS A 32 117.19 -166.27 REMARK 500 8 ILE A 66 -90.40 -92.70 REMARK 500 8 ALA A 67 -146.83 -121.48 REMARK 500 8 ASP A 77 -48.37 179.07 REMARK 500 8 SER A 100 98.52 -65.03 REMARK 500 8 HIS A 137 81.57 -69.64 REMARK 500 9 LYS A 4 -46.53 -139.36 REMARK 500 9 LEU A 14 -156.50 -83.49 REMARK 500 9 ALA A 61 2.58 -66.20 REMARK 500 9 LYS A 64 83.78 -60.69 REMARK 500 9 ALA A 67 -146.70 -165.62 REMARK 500 9 ASP A 77 -58.54 173.33 REMARK 500 10 GLU A 5 79.75 66.69 REMARK 500 10 LYS A 64 34.26 -75.98 REMARK 500 10 THR A 76 -159.58 -119.02 REMARK 500 10 LYS A 90 -6.13 -140.25 REMARK 500 10 VAL A 104 -45.48 -143.69 REMARK 500 10 ASP A 108 -88.02 -100.20 REMARK 500 10 HIS A 136 39.79 -80.57 REMARK 500 10 HIS A 137 76.30 61.98 REMARK 500 11 ASN A 15 -12.58 69.92 REMARK 500 11 ALA A 61 2.26 -64.13 REMARK 500 11 LYS A 64 -86.38 56.81 REMARK 500 11 ILE A 66 94.27 -66.55 REMARK 500 11 ALA A 67 -86.57 58.15 REMARK 500 11 THR A 76 -76.84 -81.29 REMARK 500 11 ASP A 77 -61.96 -145.59 REMARK 500 11 ILE A 99 -80.00 -100.52 REMARK 500 11 ILE A 102 78.28 61.71 REMARK 500 12 LYS A 64 -93.61 59.07 REMARK 500 12 ALA A 67 -147.01 -168.49 REMARK 500 12 ASP A 77 -79.19 -174.75 REMARK 500 12 VAL A 104 -81.65 -102.84 REMARK 500 12 HIS A 134 40.69 -83.65 REMARK 500 12 HIS A 136 -67.64 -98.74 REMARK 500 13 ASN A 15 -39.86 71.13 REMARK 500 13 LYS A 64 90.00 -54.75 REMARK 500 13 ALA A 67 -152.77 -151.89 REMARK 500 13 ASP A 77 -53.35 -161.49 REMARK 500 13 SER A 105 112.77 -165.73 REMARK 500 13 LEU A 132 47.68 -83.53 REMARK 500 13 HIS A 138 27.88 -157.96 REMARK 500 14 ALA A 67 -91.57 -148.17 REMARK 500 14 THR A 76 -60.49 -97.06 REMARK 500 14 ASP A 77 -69.55 -179.31 REMARK 500 14 SER A 100 -73.08 64.85 REMARK 500 14 GLN A 117 -73.81 -56.00 REMARK 500 14 GLU A 133 90.30 67.05 REMARK 500 14 HIS A 138 -72.07 -162.51 REMARK 500 15 ASP A 3 -50.40 -155.96 REMARK 500 15 GLU A 5 80.54 54.24 REMARK 500 15 ASN A 15 -55.35 71.38 REMARK 500 15 LYS A 64 -92.40 57.57 REMARK 500 15 ASN A 65 37.47 -172.03 REMARK 500 15 ALA A 67 -146.01 -151.04 REMARK 500 15 ILE A 99 -76.44 -85.98 REMARK 500 15 ILE A 102 84.27 58.55 REMARK 500 15 ASN A 103 29.44 -78.24 REMARK 500 15 SER A 105 108.38 -175.32 REMARK 500 16 ASP A 3 -74.19 -110.67 REMARK 500 16 GLU A 5 -173.49 63.50 REMARK 500 16 ASN A 15 91.24 59.26 REMARK 500 16 ALA A 42 -44.36 -141.90 REMARK 500 16 LYS A 64 -96.05 59.48 REMARK 500 16 ASN A 65 37.96 -172.20 REMARK 500 16 ALA A 67 -145.47 -145.97 REMARK 500 16 ASP A 77 -87.06 -164.80 REMARK 500 16 LYS A 131 -163.72 56.37 REMARK 500 17 GLU A 5 124.71 65.28 REMARK 500 17 ALA A 42 -67.35 -146.07 REMARK 500 17 LYS A 64 96.47 -51.78 REMARK 500 17 ALA A 67 -149.40 -174.86 REMARK 500 17 THR A 76 -155.57 -115.96 REMARK 500 17 ASN A 103 31.18 -88.68 REMARK 500 17 VAL A 104 -67.98 -105.09 REMARK 500 17 HIS A 134 94.25 -160.40 REMARK 500 18 LYS A 64 106.61 -55.62 REMARK 500 18 ALA A 67 -154.22 -173.84 REMARK 500 18 ASP A 77 -68.43 -176.17 REMARK 500 18 VAL A 104 -44.59 -162.83 REMARK 500 18 LEU A 132 100.33 64.97 REMARK 500 18 HIS A 134 63.09 60.48 REMARK 500 18 HIS A 136 -93.88 62.59 REMARK 500 18 HIS A 137 -80.70 -159.77 REMARK 500 19 LYS A 4 -62.63 -160.24 REMARK 500 19 GLU A 5 113.65 64.66 REMARK 500 19 LYS A 64 105.50 -59.38 REMARK 500 19 ILE A 66 -77.11 -95.95 REMARK 500 19 ALA A 67 -145.14 -121.85 REMARK 500 19 THR A 78 -35.62 -171.58 REMARK 500 19 VAL A 104 -74.96 -141.53 REMARK 500 19 LYS A 131 -170.30 66.42 REMARK 500 19 LEU A 132 95.25 -162.94 REMARK 500 20 GLU A 5 106.72 69.52 REMARK 500 20 LYS A 64 -178.35 65.26 REMARK 500 20 ALA A 67 -89.32 -143.34 REMARK 500 20 THR A 76 59.32 -106.16 REMARK 500 20 ASP A 77 -57.60 76.83 REMARK 500 20 LYS A 90 42.07 -155.50 REMARK 500 20 ILE A 99 -155.19 -142.47 REMARK 500 20 SER A 100 -57.00 -176.81 REMARK 500 20 ASN A 103 29.80 -79.16 REMARK 500 20 LYS A 131 102.73 59.82 REMARK 500 20 HIS A 134 12.12 -145.71 REMARK 500 20 HIS A 138 94.48 61.77 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15167 RELATED DB: BMRB REMARK 900 RELATED ID: ER538 RELATED DB: TARGETDB
DBREF 2JOE A 2 131 UNP P33354 YEHR_ECOLI 24 153
SEQADV 2JOE MET A 1 UNP P33354 CLONING ARTIFACT SEQADV 2JOE LEU A 132 UNP P33354 CLONING ARTIFACT SEQADV 2JOE GLU A 133 UNP P33354 CLONING ARTIFACT SEQADV 2JOE HIS A 134 UNP P33354 EXPRESSION TAG SEQADV 2JOE HIS A 135 UNP P33354 EXPRESSION TAG SEQADV 2JOE HIS A 136 UNP P33354 EXPRESSION TAG SEQADV 2JOE HIS A 137 UNP P33354 EXPRESSION TAG SEQADV 2JOE HIS A 138 UNP P33354 EXPRESSION TAG SEQADV 2JOE HIS A 139 UNP P33354 EXPRESSION TAG
SEQRES 1 A 139 MET GLY ASP LYS GLU GLU SER LYS LYS PHE SER ALA ASN SEQRES 2 A 139 LEU ASN GLY THR GLU ILE ALA ILE THR TYR VAL TYR LYS SEQRES 3 A 139 GLY ASP LYS VAL LEU LYS GLN SER SER GLU THR LYS ILE SEQRES 4 A 139 GLN PHE ALA SER ILE GLY ALA THR THR LYS GLU ASP ALA SEQRES 5 A 139 ALA LYS THR LEU GLU PRO LEU SER ALA LYS TYR LYS ASN SEQRES 6 A 139 ILE ALA GLY VAL GLU GLU LYS LEU THR TYR THR ASP THR SEQRES 7 A 139 TYR ALA GLN GLU ASN VAL THR ILE ASP MET GLU LYS VAL SEQRES 8 A 139 ASP PHE LYS ALA LEU GLN GLY ILE SER GLY ILE ASN VAL SEQRES 9 A 139 SER ALA GLU ASP ALA LYS LYS GLY ILE THR MET ALA GLN SEQRES 10 A 139 MET GLU LEU VAL MET LYS ALA ALA GLY PHE LYS GLU VAL SEQRES 11 A 139 LYS LEU GLU HIS HIS HIS HIS HIS HIS
HELIX 1 1 THR A 48 ALA A 61 1 14 HELIX 2 2 ASP A 92 GLN A 97 1 6 HELIX 3 3 SER A 105 GLY A 112 1 8 HELIX 4 4 THR A 114 ALA A 125 1 12
SHEET 1 A 6 GLU A 70 TYR A 75 0 SHEET 2 A 6 TYR A 79 ASP A 87 -1 O GLN A 81 N THR A 74 SHEET 3 A 6 LYS A 29 GLN A 40 -1 N ILE A 39 O ALA A 80 SHEET 4 A 6 THR A 17 LYS A 26 -1 N THR A 22 O SER A 34 SHEET 5 A 6 GLU A 6 LEU A 14 -1 N ALA A 12 O ILE A 19 SHEET 6 A 6 GLU A 129 LYS A 131 -1 O VAL A 130 N LYS A 9
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000