10 20 30 40 50 60 70 80 2JNV - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL TRANSPORT 06-FEB-07 2JNV
TITLE SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF NIFU-LIKE TITLE 2 PROTEIN FROM ORYZA SATIVA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIFU-LIKE PROTEIN 1, CHLOROPLAST; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 73-153; COMPND 5 SYNONYM: OSNIFU1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 4530; SOURCE 5 GENE: NIFU1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET23D
KEYWDS IRON-SULFUR CLUSTER BINDING, PROGRAM FOR RICE GENOME KEYWDS 2 RESERCH, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL KEYWDS 5 TRANSPORT
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.SAIO,K.OGURA,H.KUMETA,M.YOKOCHI,S.KATOH,E.KATOH,F.INAGAKI, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI)
REVDAT 2 24-FEB-09 2JNV 1 VERSN REVDAT 1 18-DEC-07 2JNV 0
JRNL AUTH T.SAIO,H.KUMETA,K.OGURA,M.YOKOCHI,M.ASAYAMA, JRNL AUTH 2 S.KATOH,E.KATOH,K.TESHIMA,F.INAGAKI JRNL TITL THE COOPERATIVE ROLE OF OSCNFU-1A DOMAIN I AND JRNL TITL 2 DOMAIN II IN THE IRON SULPHUR CLUSTER TRANSFER JRNL TITL 3 PROCESS AS REVEALED BY NMR JRNL REF J.BIOCHEM.(TOKYO) V. 142 113 2007 JRNL REFN ISSN 0021-924X JRNL PMID 17545250 JRNL DOI 10.1093/JB/MVM120
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JNV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB100067.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.0; 7.5 REMARK 210 IONIC STRENGTH : 150; 150 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE, 150 REMARK 210 MM SODIUM CHLORIDE, 0.02 W/V REMARK 210 DSS, 10 % D2O, 10 MM DTT, 0.6 REMARK 210 MM [U-98% 13C; U-98% 15N] REMARK 210 OSNIFU1A DOMAIN I (73-153), REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D HNCO, 3D HNCA, 3D REMARK 210 HN(CO)CA, 3D HNCACB, 3D REMARK 210 CBCA(CO)NH, 3D HN(CA)HA, 3D REMARK 210 HBHA(CO)NH, 3D CCH-TOCSY, 3D REMARK 210 HC(C)H-TOCSY, 2D HBCBCGCDHD, REMARK 210 2D HBCBCGCDCEHE, 3D 1H-15N REMARK 210 NOESY, 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, OLIVIA 1.13.1, REMARK 210 VNMR 6.1C, NMRPIPE 23 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY REMARK 210 SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 154 REMARK 465 GLU A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 HIS A 161
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 99 141.70 -175.35 REMARK 500 1 HIS A 101 -73.49 -77.13 REMARK 500 1 ILE A 138 75.71 -113.12 REMARK 500 1 PRO A 146 -171.00 -69.74 REMARK 500 1 THR A 152 73.14 -110.51 REMARK 500 2 ASP A 97 -176.28 -179.33 REMARK 500 2 ALA A 99 137.74 -171.96 REMARK 500 2 ALA A 115 145.49 -178.40 REMARK 500 2 CYS A 116 -75.34 -72.41 REMARK 500 2 CYS A 119 68.67 -166.11 REMARK 500 2 ILE A 138 76.47 -112.78 REMARK 500 2 PRO A 146 -170.87 -69.80 REMARK 500 3 ASP A 97 -176.26 -171.94 REMARK 500 3 ALA A 99 136.04 -172.88 REMARK 500 3 ILE A 138 75.12 -113.31 REMARK 500 3 PRO A 146 -170.84 -69.77 REMARK 500 3 ASP A 149 -74.49 -53.72 REMARK 500 4 TYR A 90 -64.57 -96.29 REMARK 500 4 ASP A 97 142.37 -170.79 REMARK 500 4 ALA A 99 146.14 -173.71 REMARK 500 4 HIS A 101 -71.34 -93.37 REMARK 500 4 SER A 118 -71.05 -53.46 REMARK 500 4 PRO A 120 80.03 -69.75 REMARK 500 4 ILE A 138 76.84 -112.39 REMARK 500 4 PRO A 146 -172.41 -69.81 REMARK 500 4 ASP A 149 87.80 -68.03 REMARK 500 5 LEU A 91 -64.98 -101.15 REMARK 500 5 ASP A 97 -172.87 -179.50 REMARK 500 5 ALA A 99 122.77 -177.36 REMARK 500 5 HIS A 101 -73.54 -93.41 REMARK 500 5 ALA A 104 -169.50 -77.36 REMARK 500 5 CYS A 116 117.04 -175.93 REMARK 500 5 SER A 121 40.71 -94.05 REMARK 500 5 ILE A 138 76.34 -112.93 REMARK 500 5 PRO A 146 -171.03 -69.72 REMARK 500 5 ASP A 149 -75.40 -51.76 REMARK 500 6 ALA A 99 127.61 -175.12 REMARK 500 6 CYS A 119 73.59 -119.53 REMARK 500 6 ILE A 138 75.28 -113.18 REMARK 500 7 TYR A 90 -63.30 -94.63 REMARK 500 7 ASP A 97 127.36 -174.77 REMARK 500 7 ALA A 99 117.78 -173.37 REMARK 500 7 HIS A 101 -74.09 -93.69 REMARK 500 7 ALA A 115 -59.19 -121.11 REMARK 500 7 SER A 118 -73.21 -60.57 REMARK 500 7 SER A 121 60.67 -113.19 REMARK 500 7 ALA A 143 -173.61 -178.46 REMARK 500 7 PRO A 146 -170.83 -69.81 REMARK 500 8 LEU A 73 159.55 61.04 REMARK 500 8 ALA A 99 131.51 -178.32 REMARK 500 8 HIS A 101 -64.13 -97.64 REMARK 500 8 PRO A 120 -174.50 -69.76 REMARK 500 8 ILE A 138 74.33 -113.56 REMARK 500 8 PRO A 146 -177.51 -69.73 REMARK 500 8 LYS A 150 175.54 -55.20 REMARK 500 8 GLU A 151 -72.20 -51.91 REMARK 500 9 TYR A 90 -63.91 -94.55 REMARK 500 9 ASP A 97 136.81 -179.16 REMARK 500 9 HIS A 101 -72.28 -76.96 REMARK 500 9 PRO A 120 -170.69 -69.79 REMARK 500 9 ILE A 138 76.89 -112.34 REMARK 500 9 PRO A 146 -171.01 -69.72 REMARK 500 10 LEU A 73 159.68 61.04 REMARK 500 10 ASP A 97 -175.23 -174.77 REMARK 500 10 ALA A 99 123.32 -173.42 REMARK 500 10 HIS A 101 -63.53 -100.18 REMARK 500 10 CYS A 119 73.31 -115.17 REMARK 500 10 PRO A 120 90.54 -69.78 REMARK 500 10 ILE A 138 75.06 -113.24 REMARK 500 10 PRO A 146 -170.83 -69.76 REMARK 500 10 VAL A 147 -173.49 -65.61 REMARK 500 10 ASP A 149 -173.47 -64.86 REMARK 500 11 ASP A 97 -175.70 -179.39 REMARK 500 11 ALA A 99 131.24 -175.78 REMARK 500 11 PRO A 120 -172.14 -69.74 REMARK 500 11 ILE A 138 73.74 -113.41 REMARK 500 11 PRO A 146 -169.67 -69.76 REMARK 500 11 ASP A 149 176.41 -59.69 REMARK 500 11 LYS A 150 -174.80 -63.46 REMARK 500 12 LEU A 73 159.58 60.96 REMARK 500 12 ASP A 97 -176.95 -170.19 REMARK 500 12 ALA A 99 137.30 -173.74 REMARK 500 12 HIS A 101 -63.95 -103.50 REMARK 500 12 ILE A 138 74.96 -113.09 REMARK 500 12 ALA A 143 -169.44 -162.37 REMARK 500 12 PRO A 146 -172.94 -69.85 REMARK 500 12 VAL A 147 46.18 -92.15 REMARK 500 13 ASP A 97 -175.54 -173.56 REMARK 500 13 ALA A 99 132.35 -172.40 REMARK 500 13 ALA A 115 -174.58 -59.73 REMARK 500 13 ILE A 138 76.03 -112.95 REMARK 500 14 ALA A 99 125.89 -176.17 REMARK 500 14 HIS A 101 -74.38 -83.77 REMARK 500 14 PRO A 120 80.04 -69.73 REMARK 500 14 ILE A 138 76.16 -112.99 REMARK 500 14 PRO A 146 -172.23 -69.80 REMARK 500 14 THR A 148 85.90 -68.37 REMARK 500 14 ASP A 149 -170.84 -174.35 REMARK 500 14 GLU A 151 170.82 -54.73 REMARK 500 15 LEU A 73 159.71 61.05 REMARK 500 15 ASP A 97 -177.39 -175.93 REMARK 500 15 ALA A 99 123.99 -173.27 REMARK 500 15 CYS A 119 73.05 -114.88 REMARK 500 16 ALA A 99 116.88 -173.15 REMARK 500 16 PRO A 120 78.11 -69.73 REMARK 500 16 ILE A 138 75.84 -113.05 REMARK 500 17 ALA A 99 134.02 -177.61 REMARK 500 17 HIS A 101 -71.65 -88.51 REMARK 500 17 ALA A 115 -179.19 -173.94 REMARK 500 17 CYS A 119 73.12 -113.99 REMARK 500 17 ILE A 138 74.75 -113.39 REMARK 500 18 LEU A 73 160.66 62.88 REMARK 500 18 ASP A 97 -176.65 -178.28 REMARK 500 18 ALA A 99 105.38 -172.02 REMARK 500 18 SER A 118 -70.95 -61.49 REMARK 500 18 PRO A 146 -170.88 -69.81 REMARK 500 18 LYS A 150 -48.45 -146.61 REMARK 500 19 LEU A 91 -66.88 -101.21 REMARK 500 19 ASP A 97 -175.96 179.85 REMARK 500 19 HIS A 101 -73.58 -74.56 REMARK 500 19 ALA A 115 -75.81 -95.32 REMARK 500 19 CYS A 116 -177.47 -179.15 REMARK 500 19 PRO A 120 93.51 -69.75 REMARK 500 19 SER A 121 -39.90 -130.10 REMARK 500 19 ILE A 138 76.15 -112.86 REMARK 500 19 PRO A 146 -175.35 -69.74 REMARK 500 20 ASP A 97 139.89 -179.37 REMARK 500 20 ALA A 99 138.77 -172.89 REMARK 500 20 HIS A 101 -71.90 -88.36 REMARK 500 20 CYS A 119 73.36 -118.73 REMARK 500 20 SER A 121 31.88 -96.83 REMARK 500 20 ILE A 138 78.80 -111.49 REMARK 500 20 ALA A 143 -169.98 -167.12 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TH5 RELATED DB: PDB REMARK 900 A STRUCTURAL HOMOLOG REMARK 900 RELATED ID: 1VEH RELATED DB: PDB REMARK 900 A STRUCTURAL HOMOLOG
DBREF 2JNV A 73 153 UNP Q84LK7 NIFU1_ORYSA 73 153
SEQADV 2JNV MET A 71 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV GLY A 72 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV LEU A 154 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV GLU A 155 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 156 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 157 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 158 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 159 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 160 UNP Q84LK7 EXPRESSION TAG SEQADV 2JNV HIS A 161 UNP Q84LK7 EXPRESSION TAG
SEQRES 1 A 91 MET GLY LEU PRO LEU THR ALA GLY ASN VAL GLU SER VAL SEQRES 2 A 91 LEU ASP GLN VAL ARG PRO TYR LEU THR ALA ASP GLY GLY SEQRES 3 A 91 ASP VAL ALA LEU HIS GLU ILE ALA GLY ASN VAL VAL ARG SEQRES 4 A 91 LEU LYS LEU GLN GLY ALA CYS GLY SER CYS PRO SER SER SEQRES 5 A 91 LEU ILE THR ILE LYS ARG GLY ILE GLU ARG ARG LEU MET SEQRES 6 A 91 GLU LYS ILE PRO ASP VAL ALA ALA VAL GLU PRO VAL THR SEQRES 7 A 91 ASP LYS GLU THR GLY LEU GLU HIS HIS HIS HIS HIS HIS
HELIX 1 1 GLY A 78 ASP A 85 1 8 HELIX 2 2 VAL A 87 THR A 92 1 6 HELIX 3 3 SER A 121 GLU A 136 1 16
SHEET 1 A 3 VAL A 98 ILE A 103 0 SHEET 2 A 3 VAL A 107 LEU A 112 -1 O LYS A 111 N ALA A 99 SHEET 3 A 3 ALA A 143 GLU A 145 1 O GLU A 145 N VAL A 108
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000