10 20 30 40 50 60 70 80 2JNH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIGASE 24-JAN-07 2JNH
TITLE SOLUTION STRUCTURE OF THE UBA DOMAIN FROM CBL-B
COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE CBL-B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA DOMAIN; COMPND 5 SYNONYM: SIGNAL TRANSDUCTION PROTEIN CBL-B, SH3-BINDING COMPND 6 PROTEIN CBL-B, CASITAS B-LINEAGE LYMPHOMA PROTO-ONCOGENE B, COMPND 7 RING FINGER PROTEIN 56; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CBLB, RNF56; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-32M
KEYWDS UBA DOMAIN, CBL-B, NMR, LIGASE
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR C.ZHOU,Z.ZHOU,D.LIN,H.HU
REVDAT 4 24-FEB-09 2JNH 1 VERSN REVDAT 3 07-OCT-08 2JNH 1 JRNL REVDAT 2 15-JUL-08 2JNH 1 JRNL REVDAT 1 05-FEB-08 2JNH 0
JRNL AUTH Z.R.ZHOU,H.C.GAO,C.J.ZHOU,Y.G.CHANG,J.HONG, JRNL AUTH 2 A.X.SONG,D.H.LIN,H.Y.HU JRNL TITL DIFFERENTIAL UBIQUITIN BINDING OF THE UBA DOMAINS JRNL TITL 2 FROM HUMAN C-CBL AND CBL-B: NMR STRUCTURAL AND JRNL TITL 3 BIOCHEMICAL INSIGHTS JRNL REF PROTEIN SCI. V. 17 1805 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18596201 JRNL DOI 10.1110/PS.036384.108
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.0 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JNH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB100053.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C, U-15N] PROTEIN, REMARK 210 20 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, REMARK 210 0.01 % SODIUM AZIDE, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D CBCA(CO)NH, 3D C(CO) REMARK 210 NH, 3D HNCO, 3D HNCACB, 3D REMARK 210 HCCH-TOCSY, 3D HNHA, 3D 1H-15N REMARK 210 NOESY, 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW 2.3, SPARKY 3.110, REMARK 210 ARIA 2.0, PROCHECKNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 ALA A 2
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 4 -54.75 -149.84 REMARK 500 1 ASN A 6 -72.92 -117.91 REMARK 500 1 PHE A 45 -81.86 63.50 REMARK 500 2 ASN A 6 -62.80 -159.14 REMARK 500 2 ALA A 31 38.26 -83.05 REMARK 500 2 GLN A 32 -84.11 60.61 REMARK 500 2 ASN A 33 -5.82 -148.23 REMARK 500 2 GLU A 44 -73.41 -124.55 REMARK 500 2 PHE A 45 -21.89 -164.58 REMARK 500 3 PHE A 45 135.36 65.41 REMARK 500 4 LEU A 4 -85.70 58.53 REMARK 500 4 ARG A 43 -66.60 -92.06 REMARK 500 4 GLU A 44 -70.20 -50.35 REMARK 500 4 PHE A 45 -73.35 -55.71 REMARK 500 5 LEU A 4 -69.61 -100.88 REMARK 500 5 ALA A 31 32.49 -82.60 REMARK 500 5 GLN A 32 -76.68 65.36 REMARK 500 5 ASN A 33 19.50 -164.40 REMARK 500 5 GLU A 44 -73.41 -61.31 REMARK 500 6 ASN A 6 -54.20 -129.80 REMARK 500 6 ALA A 31 45.38 -81.05 REMARK 500 6 GLN A 32 -77.38 64.30 REMARK 500 6 ASN A 33 14.51 -161.46 REMARK 500 6 GLU A 44 -80.70 -125.89 REMARK 500 6 PHE A 45 -75.33 -174.10 REMARK 500 7 LEU A 4 -159.36 55.95 REMARK 500 7 ASN A 6 91.80 57.56 REMARK 500 7 ALA A 31 26.74 -77.01 REMARK 500 8 ALA A 31 30.12 -83.21 REMARK 500 8 GLN A 32 -81.42 65.09 REMARK 500 8 ASN A 33 25.41 -155.00 REMARK 500 8 GLU A 44 -80.32 -124.63 REMARK 500 8 PHE A 45 142.65 -171.74 REMARK 500 9 ASN A 6 -153.69 -109.32 REMARK 500 9 VAL A 24 -70.08 -65.20 REMARK 500 9 GLN A 32 -78.02 64.10 REMARK 500 9 ASN A 33 28.15 -157.16 REMARK 500 9 GLU A 44 -77.37 -126.10 REMARK 500 9 PHE A 45 12.12 -163.93 REMARK 500 10 LEU A 4 -60.50 -94.36 REMARK 500 10 ALA A 31 39.98 -81.79 REMARK 500 10 GLN A 32 -85.12 62.70 REMARK 500 10 ASN A 33 27.35 -151.97 REMARK 500 11 LEU A 4 -83.06 61.67 REMARK 500 11 ASN A 6 -59.67 -143.76 REMARK 500 11 ALA A 20 -176.73 -65.55 REMARK 500 11 GLN A 32 -72.97 69.07 REMARK 500 11 ASN A 33 19.37 -157.29 REMARK 500 11 PHE A 45 -174.36 59.88 REMARK 500 12 LEU A 4 -85.87 61.00 REMARK 500 13 LEU A 4 -75.25 -126.56 REMARK 500 13 GLN A 32 -83.63 64.76 REMARK 500 13 ASN A 33 24.57 -151.09 REMARK 500 13 GLU A 44 -74.04 -61.79 REMARK 500 14 ASN A 6 79.82 58.28 REMARK 500 14 ALA A 31 42.15 -89.90 REMARK 500 14 GLN A 32 -92.94 56.92 REMARK 500 14 ASN A 33 4.62 -151.89 REMARK 500 14 PHE A 45 -83.92 62.04 REMARK 500 15 LEU A 4 -67.45 -92.39 REMARK 500 15 ASN A 6 -38.35 -142.73 REMARK 500 15 ALA A 31 23.67 -78.98 REMARK 500 15 GLU A 44 -81.15 -62.74 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15111 RELATED DB: BMRB
DBREF 2JNH A 1 46 UNP Q13191 CBLB_HUMAN 926 971
SEQRES 1 A 46 GLU ALA ALA LEU GLU ASN VAL ASP ALA LYS ILE ALA LYS SEQRES 2 A 46 LEU MET GLY GLU GLY TYR ALA PHE GLU GLU VAL LYS ARG SEQRES 3 A 46 ALA LEU GLU ILE ALA GLN ASN ASN VAL GLU VAL ALA ARG SEQRES 4 A 46 SER ILE LEU ARG GLU PHE ALA
HELIX 1 1 ASN A 6 GLY A 16 1 11 HELIX 2 2 ALA A 20 ALA A 31 1 12 HELIX 3 3 ASN A 34 ARG A 43 1 10
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000