10 20 30 40 50 60 70 80 2JN9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-DEC-06 2JN9
TITLE NMR SOLUTION STRUCTURE OF YKVR PROTEIN FROM BACILLUS TITLE 2 SUBTILIS: NESG TARGET SR358
COMPND MOL_ID: 1; COMPND 2 MOLECULE: YKVR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: YKVR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21
KEYWDS YKVR, SR358, BACILLUS SUBTILIS, NESG, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 10
MDLTYP MINIMIZED AVERAGE
AUTHOR S.V.T.GURLA,J.M.ARAMINI,K.CHI HO,K.CUNNINGHAM,L.-C.MA, AUTHOR 2 R.XIAO,M.C.BARAN,T.B.ACTON,J.LIU,B.ROST,G.T.MONTELIONE, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 3 24-FEB-09 2JN9 1 VERSN REVDAT 2 15-MAY-07 2JN9 1 DBREF REVDAT 1 01-MAY-07 2JN9 0
JRNL AUTH S.V.T.GURLA,J.M.ARAMINI,K.CHI HO,K.CUNNINGHAM, JRNL AUTH 2 L.-C.MA,R.XIAO,M.C.BARAN,T.B.ACTON,J.LIU,B.ROST, JRNL AUTH 3 G.T.MONTELIONE JRNL TITL NMR SOLUTION STRUCTURE OF YKVR PROTEIN FROM JRNL TITL 2 BACILLUS SUBTILIS: NESG TARGET SR358 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE, DYANA, CNS 1.1, X-PLOR 2.0.6 REMARK 3 AUTHORS : HUANG, SWAPANA, RAJAN, KE, XIA, SHUKLA, INOUYE REMARK 3 AND MONTELIONE (AUTOSTRUCTURE), GUNTERT, BRAUN REMARK 3 AND WUTHRICH (DYANA), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JN9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB100045.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 5.11 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17 MM PROTEIN, 1.0 MM REMARK 210 SODIUM AZIDE, 95% H2O, 5% D2O; REMARK 210 1.17 MM PROTEIN, 1.0 MM SODIUM REMARK 210 AZIDE, 95% H2O, 5% D2O; 1.17 REMARK 210 MM PROTEIN, 1.0 MM SODIUM REMARK 210 AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH, 3D HNCACB, 2D REMARK 210 1H-15N HSQC, 2D 1H-13C HSQC, REMARK 210 3D HNCO, 3D HBHA(CO)NH, 3D REMARK 210 HNHA, 3D HCCH-TOCSY, 3D 1H-15N REMARK 210 NOESY, 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOASSIGN 2.1, AVS, REMARK 210 AUTOSTRUCTURE, DYANA REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 56 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 8 72.93 55.38 REMARK 500 1 ASN A 9 -16.51 72.78 REMARK 500 1 PRO A 23 -26.97 1.05 REMARK 500 1 ARG A 25 90.72 -69.32 REMARK 500 1 LEU A 45 107.98 -161.04 REMARK 500 1 TYR A 46 -64.62 73.73 REMARK 500 1 GLU A 47 -74.37 77.94 REMARK 500 1 ASP A 58 81.63 55.38 REMARK 500 1 THR A 73 169.90 77.61 REMARK 500 1 ASN A 74 -64.33 -147.37 REMARK 500 1 LEU A 75 -148.89 -142.25 REMARK 500 1 TYR A 76 136.66 87.92 REMARK 500 1 GLU A 77 113.55 -24.13 REMARK 500 1 ALA A 80 39.64 -162.89 REMARK 500 1 VAL A 81 -90.81 -113.42 REMARK 500 1 ASP A 96 163.98 66.38 REMARK 500 1 HIS A 102 87.89 -174.17 REMARK 500 1 HIS A 103 -72.82 -107.91 REMARK 500 2 ASN A 9 -16.86 72.56 REMARK 500 2 LYS A 24 173.93 176.74 REMARK 500 2 TYR A 46 82.32 58.63 REMARK 500 2 LYS A 48 -60.22 -103.42 REMARK 500 2 SER A 71 -89.09 -92.75 REMARK 500 2 ASN A 74 -18.19 70.36 REMARK 500 2 LEU A 75 153.03 71.30 REMARK 500 2 TYR A 76 23.00 47.16 REMARK 500 2 ASP A 96 -170.91 61.94 REMARK 500 2 SER A 97 22.04 -140.47 REMARK 500 2 HIS A 100 118.59 -165.75 REMARK 500 2 HIS A 102 -90.03 68.88 REMARK 500 3 VAL A 2 125.04 73.14 REMARK 500 3 ASN A 9 -13.22 73.29 REMARK 500 3 ALA A 15 -53.67 -120.98 REMARK 500 3 GLU A 22 -63.16 -94.00 REMARK 500 3 LYS A 24 -165.53 177.79 REMARK 500 3 THR A 34 -167.27 -102.43 REMARK 500 3 HIS A 39 -72.21 -56.45 REMARK 500 3 TYR A 46 -73.83 59.77 REMARK 500 3 GLU A 47 -84.77 67.16 REMARK 500 3 LYS A 48 -90.19 -168.51 REMARK 500 3 ASP A 58 74.96 49.83 REMARK 500 3 LEU A 72 -67.56 -141.34 REMARK 500 3 TYR A 76 -47.66 -167.92 REMARK 500 3 GLU A 77 93.46 -165.08 REMARK 500 3 ASP A 92 -153.91 -118.32 REMARK 500 3 SER A 97 13.86 174.52 REMARK 500 3 HIS A 100 72.07 60.53 REMARK 500 3 HIS A 103 -75.95 -63.58 REMARK 500 3 HIS A 104 137.01 175.56 REMARK 500 4 VAL A 2 83.05 65.89 REMARK 500 4 ASN A 9 -24.43 72.11 REMARK 500 4 LYS A 24 -176.71 179.95 REMARK 500 4 TYR A 46 95.25 36.71 REMARK 500 4 SER A 69 84.59 66.20 REMARK 500 4 LEU A 72 -153.89 -90.65 REMARK 500 4 TYR A 76 -60.48 75.52 REMARK 500 4 ASN A 94 -58.38 67.09 REMARK 500 4 ALA A 95 -65.50 -120.73 REMARK 500 4 ASP A 96 -169.79 -164.68 REMARK 500 4 SER A 97 52.46 -162.74 REMARK 500 4 HIS A 103 177.97 67.13 REMARK 500 4 HIS A 104 -15.34 -159.15 REMARK 500 5 ASN A 8 -74.28 68.91 REMARK 500 5 ASN A 9 -9.73 -147.94 REMARK 500 5 LYS A 24 140.71 179.84 REMARK 500 5 ARG A 25 89.40 -68.04 REMARK 500 5 SER A 35 5.11 -67.52 REMARK 500 5 THR A 37 23.66 -160.59 REMARK 500 5 TYR A 46 -73.30 75.34 REMARK 500 5 GLU A 47 -126.11 46.39 REMARK 500 5 LYS A 48 -51.50 -171.68 REMARK 500 5 SER A 69 99.47 -49.34 REMARK 500 5 THR A 70 -31.89 -133.31 REMARK 500 5 THR A 73 -64.26 -102.46 REMARK 500 5 ASN A 74 -48.04 -174.76 REMARK 500 5 TYR A 76 -46.14 173.66 REMARK 500 5 ALA A 80 -61.42 -91.68 REMARK 500 5 SER A 97 23.70 -154.39 REMARK 500 5 HIS A 104 -41.58 176.82 REMARK 500 6 LYS A 3 -38.51 -134.87 REMARK 500 6 ASN A 8 78.74 62.35 REMARK 500 6 ASN A 9 -43.02 73.79 REMARK 500 6 ALA A 15 -54.64 -147.08 REMARK 500 6 TYR A 46 -29.23 -177.32 REMARK 500 6 LYS A 48 -173.43 75.04 REMARK 500 6 ASP A 58 26.94 44.30 REMARK 500 6 ASN A 67 162.24 64.39 REMARK 500 6 TYR A 68 -61.58 -148.19 REMARK 500 6 SER A 71 -47.72 -152.28 REMARK 500 6 LEU A 72 -86.40 62.10 REMARK 500 6 LEU A 75 -37.58 -160.69 REMARK 500 6 TYR A 76 89.27 -157.44 REMARK 500 6 ALA A 80 23.08 -79.13 REMARK 500 6 SER A 97 27.44 -165.43 REMARK 500 6 GLU A 99 -67.86 -91.42 REMARK 500 7 VAL A 2 90.57 63.22 REMARK 500 7 ASN A 8 -96.27 48.66 REMARK 500 7 PRO A 23 -20.73 -1.77 REMARK 500 7 LYS A 24 117.46 -167.29 REMARK 500 7 ARG A 25 104.24 -56.73 REMARK 500 7 TYR A 46 72.65 37.43 REMARK 500 7 LEU A 72 177.83 64.48 REMARK 500 7 THR A 73 -29.11 63.35 REMARK 500 7 TYR A 76 -66.86 -153.83 REMARK 500 7 PRO A 78 -80.65 -87.26 REMARK 500 7 ASP A 92 -148.72 61.58 REMARK 500 7 SER A 97 24.97 -144.29 REMARK 500 7 HIS A 100 -88.62 62.82 REMARK 500 7 HIS A 101 144.11 -176.24 REMARK 500 8 VAL A 2 128.84 71.10 REMARK 500 8 LYS A 3 -80.67 -92.39 REMARK 500 8 ALA A 15 -61.09 -130.58 REMARK 500 8 LYS A 24 -171.75 177.82 REMARK 500 8 TYR A 46 100.11 41.58 REMARK 500 8 GLU A 47 -169.16 -70.28 REMARK 500 8 LYS A 48 -65.17 -97.55 REMARK 500 8 SER A 69 91.76 65.93 REMARK 500 8 LEU A 72 -119.31 -99.36 REMARK 500 8 THR A 73 47.30 -77.21 REMARK 500 8 TYR A 76 -82.24 -119.81 REMARK 500 8 GLU A 77 115.26 -170.93 REMARK 500 8 ALA A 95 -163.13 64.00 REMARK 500 8 SER A 97 25.41 -156.56 REMARK 500 8 HIS A 100 -49.86 72.98 REMARK 500 8 HIS A 102 -149.57 -113.11 REMARK 500 8 HIS A 104 -37.70 59.46 REMARK 500 9 ASN A 9 -8.28 76.24 REMARK 500 9 LYS A 24 148.65 176.23 REMARK 500 9 THR A 37 41.81 -147.75 REMARK 500 9 TYR A 46 -161.18 73.01 REMARK 500 9 GLU A 47 -155.61 -177.05 REMARK 500 9 LYS A 48 -147.59 -93.53 REMARK 500 9 ASN A 67 100.34 66.83 REMARK 500 9 LEU A 75 163.60 75.30 REMARK 500 9 TYR A 76 112.56 71.24 REMARK 500 9 VAL A 81 -87.35 -141.43 REMARK 500 9 GLU A 83 99.63 -59.38 REMARK 500 9 ALA A 95 -77.08 -77.98 REMARK 500 9 SER A 97 17.45 -141.90 REMARK 500 9 HIS A 100 47.43 -94.72 REMARK 500 9 HIS A 101 97.82 -65.20 REMARK 500 10 VAL A 2 135.88 70.34 REMARK 500 10 ASN A 8 -55.89 70.26 REMARK 500 10 ASN A 9 -21.79 -167.84 REMARK 500 10 PRO A 23 -32.11 6.60 REMARK 500 10 GLU A 47 -99.73 73.16 REMARK 500 10 LYS A 48 -93.08 -138.51 REMARK 500 10 SER A 69 -164.62 -100.81 REMARK 500 10 THR A 70 71.40 -108.48 REMARK 500 10 THR A 73 117.65 -167.66 REMARK 500 10 ASN A 74 174.78 179.42 REMARK 500 10 TYR A 76 25.02 -149.27 REMARK 500 10 VAL A 81 -87.48 -141.74 REMARK 500 10 ASP A 92 -178.99 81.35 REMARK 500 10 ASP A 96 -165.46 61.25 REMARK 500 10 SER A 97 18.97 -146.11 REMARK 500 10 HIS A 101 75.74 51.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 22 PRO A 23 1 -133.87 REMARK 500 GLU A 22 PRO A 23 6 145.39 REMARK 500 GLU A 22 PRO A 23 7 -136.44 REMARK 500 GLU A 22 PRO A 23 10 -134.00 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR358 RELATED DB: TARGETDB
DBREF 2JN9 A 3 97 UNP O31683 O31683_BACSU 2 96
SEQADV 2JN9 MET A 1 UNP O31683 CLONING ARTIFACT SEQADV 2JN9 VAL A 2 UNP O31683 CLONING ARTIFACT SEQADV 2JN9 LEU A 98 UNP O31683 CLONING ARTIFACT SEQADV 2JN9 GLU A 99 UNP O31683 CLONING ARTIFACT SEQADV 2JN9 HIS A 100 UNP O31683 EXPRESSION TAG SEQADV 2JN9 HIS A 101 UNP O31683 EXPRESSION TAG SEQADV 2JN9 HIS A 102 UNP O31683 EXPRESSION TAG SEQADV 2JN9 HIS A 103 UNP O31683 EXPRESSION TAG SEQADV 2JN9 HIS A 104 UNP O31683 EXPRESSION TAG SEQADV 2JN9 HIS A 105 UNP O31683 EXPRESSION TAG
SEQRES 1 A 105 MET VAL LYS THR LEU ARG LEU ASN ASN VAL THR LEU GLU SEQRES 2 A 105 MET ALA ALA TYR GLN GLU GLU SER GLU PRO LYS ARG LYS SEQRES 3 A 105 ILE ALA PHE THR LEU ASN VAL THR SER GLU THR TYR HIS SEQRES 4 A 105 ASP ILE ALA VAL LEU LEU TYR GLU LYS THR PHE ASN VAL SEQRES 5 A 105 GLU VAL PRO GLU ARG ASP LEU ALA PHE ARG GLY GLU MET SEQRES 6 A 105 THR ASN TYR SER THR SER LEU THR ASN LEU TYR GLU PRO SEQRES 7 A 105 GLY ALA VAL SER GLU PHE TYR ILE GLU ILE THR GLU ILE SEQRES 8 A 105 ASP LYS ASN ALA ASP SER LEU GLU HIS HIS HIS HIS HIS SEQRES 9 A 105 HIS
HELIX 1 1 THR A 37 ALA A 42 1 6
SHEET 1 A 4 VAL A 10 LEU A 12 0 SHEET 2 A 4 LEU A 5 LEU A 7 -1 N LEU A 7 O VAL A 10 SHEET 3 A 4 PHE A 50 VAL A 54 -1 O GLU A 53 N ARG A 6 SHEET 4 A 4 LEU A 59 GLY A 63 -1 O PHE A 61 N VAL A 52 SHEET 1 B 3 ALA A 16 GLU A 20 0 SHEET 2 B 3 LYS A 26 VAL A 33 -1 O ALA A 28 N GLN A 18 SHEET 3 B 3 SER A 82 ILE A 88 -1 O SER A 82 N VAL A 33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000