10 20 30 40 50 60 70 80 2JMG - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 11-NOV-06 2JMG
TITLE SOLUTION STRUCTURE OF V7R MUTANT OF HIV-1 MYRISTOYLATED TITLE 2 MATRIX PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAG POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MATRIX DOMAIN, RESIDUES 2-132; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-19B
KEYWDS V7R MUTANT OF HIV-1 MYRISTOYLATED MATRIX PROTEIN, VIRAL KEYWDS 2 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.S.SAAD,E.LOELIGER,P.LUNCSFORD,M.LIRIANO,J.TAI,A.KIM, AUTHOR 2 J.MILLER,A.JOSHI,E.O.FREED,M.F.SUMMERS
REVDAT 2 24-FEB-09 2JMG 1 VERSN REVDAT 1 06-FEB-07 2JMG 0
JRNL AUTH J.S.SAAD,E.LOELIGER,P.LUNCSFORD,M.LIRIANO,J.TAI, JRNL AUTH 2 A.KIM,J.MILLER,A.JOSHI,E.O.FREED,M.F.SUMMERS JRNL TITL POINT MUTATIONS IN THE HIV-1 MATRIX PROTEIN TURN JRNL TITL 2 OFF THE MYRISTYL SWITCH. JRNL REF J.MOL.BIOL. V. 366 574 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17188710 JRNL DOI 10.1016/J.JMB.2006.11.068
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2JMG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-06. REMARK 100 THE RCSB ID CODE IS RCSB100016.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C, U-100% 15N] REMARK 210 HIV-1 V7R-MYRMA, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM NACL, 5 MM REMARK 210 DTT, 90% H2O, 10% D2O; 1 MM [U REMARK 210 -100% 15N] HIV-1 V7R-MYRMA, 50 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 NACL, 5 MM DTT, 90% H2O, 10% REMARK 210 D2O; 1 MM HIV-1 V7R-MYRMA, 50 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 NACL, 5 MM DTT, 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-1H REMARK 210 NOESY, 3D HNCA, 3D HN(CO)CA, REMARK 210 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX, DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 166.80 62.74 REMARK 500 1 ARG A 7 -42.47 -138.24 REMARK 500 1 PHE A 44 30.78 -94.26 REMARK 500 1 GLU A 52 44.96 -102.01 REMARK 500 1 THR A 53 123.90 -176.05 REMARK 500 1 VAL A 128 136.83 -174.63 REMARK 500 2 PHE A 44 33.08 -95.91 REMARK 500 2 VAL A 94 128.42 -21.56 REMARK 500 2 ALA A 119 59.89 -99.48 REMARK 500 2 ALA A 120 26.37 -148.66 REMARK 500 2 THR A 122 -170.86 51.26 REMARK 500 3 ARG A 4 48.79 -95.93 REMARK 500 3 PHE A 44 34.72 -97.08 REMARK 500 3 ALA A 45 27.96 48.56 REMARK 500 3 GLN A 116 -74.99 -95.33 REMARK 500 3 ALA A 118 -55.06 -159.41 REMARK 500 3 VAL A 128 32.28 -144.93 REMARK 500 4 SER A 6 166.91 61.66 REMARK 500 4 ARG A 7 -41.48 -136.05 REMARK 500 4 PHE A 44 34.91 -94.01 REMARK 500 4 ALA A 45 24.20 48.89 REMARK 500 4 GLU A 52 46.80 -105.54 REMARK 500 4 THR A 53 120.39 -175.00 REMARK 500 4 PRO A 66 0.61 -69.77 REMARK 500 4 ASN A 80 -70.07 -49.12 REMARK 500 4 SER A 126 -72.09 -171.43 REMARK 500 4 GLN A 127 -178.82 57.48 REMARK 500 5 ALA A 3 -169.19 -101.79 REMARK 500 5 ALA A 5 -170.37 51.26 REMARK 500 5 SER A 6 157.13 63.99 REMARK 500 5 ARG A 7 -48.26 -152.57 REMARK 500 5 ALA A 45 -1.57 93.28 REMARK 500 5 GLU A 52 47.77 -101.56 REMARK 500 5 THR A 53 122.27 -175.68 REMARK 500 5 LYS A 113 30.16 -97.06 REMARK 500 5 LYS A 114 35.19 -173.63 REMARK 500 5 ALA A 115 -44.45 -153.24 REMARK 500 5 ASP A 121 -75.83 69.35 REMARK 500 5 THR A 122 -170.82 51.26 REMARK 500 5 GLN A 130 -71.23 -131.90 REMARK 500 6 ARG A 4 -71.36 -52.24 REMARK 500 6 SER A 6 -178.28 57.74 REMARK 500 6 ARG A 7 -41.87 -134.26 REMARK 500 6 PHE A 44 31.25 -93.17 REMARK 500 6 GLU A 52 45.01 -101.66 REMARK 500 6 THR A 53 124.03 -175.85 REMARK 500 6 ASP A 93 96.21 -59.62 REMARK 500 6 ASP A 96 -178.94 -175.90 REMARK 500 7 PHE A 44 31.82 -94.32 REMARK 500 7 GLU A 52 45.67 -103.71 REMARK 500 7 THR A 53 124.53 -177.64 REMARK 500 7 ARG A 91 -3.54 74.91 REMARK 500 7 VAL A 94 134.16 -25.94 REMARK 500 7 ASP A 102 -72.45 -66.66 REMARK 500 7 ALA A 120 42.29 -172.49 REMARK 500 7 ASP A 121 44.76 -144.58 REMARK 500 8 PHE A 44 33.25 -91.82 REMARK 500 8 ALA A 45 25.94 48.14 REMARK 500 8 PRO A 66 0.60 -69.84 REMARK 500 8 ASP A 96 -179.70 -174.19 REMARK 500 8 ALA A 119 78.29 -112.44 REMARK 500 8 ALA A 120 -39.33 -165.84 REMARK 500 8 GLN A 127 -55.08 -152.41 REMARK 500 8 ASN A 131 64.66 -164.37 REMARK 500 9 SER A 6 -177.69 -58.51 REMARK 500 9 ALA A 45 3.60 91.51 REMARK 500 9 GLU A 52 49.45 -105.66 REMARK 500 9 THR A 53 122.17 -177.85 REMARK 500 9 ASP A 102 -73.98 -93.45 REMARK 500 9 ASP A 121 62.69 -108.67 REMARK 500 9 ASN A 131 44.55 -150.54 REMARK 500 10 PHE A 44 31.90 -91.64 REMARK 500 10 ALA A 45 28.69 46.03 REMARK 500 10 ALA A 118 -39.04 -173.60 REMARK 500 10 THR A 122 -170.79 51.38 REMARK 500 11 SER A 6 164.80 62.58 REMARK 500 11 ARG A 7 -42.12 -147.61 REMARK 500 11 ALA A 45 11.67 93.66 REMARK 500 11 GLU A 52 46.30 -103.28 REMARK 500 11 THR A 53 123.03 -177.55 REMARK 500 11 PRO A 66 0.49 -69.83 REMARK 500 11 THR A 70 51.00 -141.66 REMARK 500 11 ASP A 93 94.10 -58.02 REMARK 500 11 LYS A 114 31.62 -95.81 REMARK 500 11 GLN A 116 -44.80 -175.29 REMARK 500 11 ALA A 119 -168.09 -100.82 REMARK 500 12 SER A 6 120.77 66.13 REMARK 500 12 PHE A 44 34.42 -91.62 REMARK 500 12 GLU A 52 46.60 -109.16 REMARK 500 12 THR A 53 121.05 -177.24 REMARK 500 12 PRO A 66 1.56 -69.73 REMARK 500 12 ASN A 80 -70.50 -49.93 REMARK 500 12 SER A 111 -75.61 -101.35 REMARK 500 12 LYS A 113 -38.34 -171.63 REMARK 500 12 GLN A 116 37.99 -178.42 REMARK 500 12 ALA A 119 42.39 -101.28 REMARK 500 12 ALA A 120 28.87 -163.43 REMARK 500 12 ASP A 121 60.81 -171.22 REMARK 500 12 GLN A 130 72.81 -111.56 REMARK 500 13 PHE A 44 32.77 -91.91 REMARK 500 13 GLU A 52 45.77 -106.91 REMARK 500 13 THR A 53 120.00 -174.02 REMARK 500 13 THR A 81 -71.64 -90.27 REMARK 500 13 ARG A 91 -4.20 75.53 REMARK 500 13 VAL A 94 135.77 -26.47 REMARK 500 13 SER A 111 -75.22 -91.76 REMARK 500 13 LYS A 113 -36.84 -174.33 REMARK 500 13 ALA A 120 35.46 -150.06 REMARK 500 13 ASP A 121 -56.41 -137.74 REMARK 500 13 THR A 122 -170.84 51.26 REMARK 500 13 ASN A 125 36.60 -168.20 REMARK 500 13 ASN A 131 -171.15 -174.34 REMARK 500 14 ALA A 5 -169.59 51.00 REMARK 500 14 SER A 6 175.52 -54.85 REMARK 500 14 PHE A 44 34.69 -94.63 REMARK 500 14 GLU A 52 46.88 -104.11 REMARK 500 14 THR A 53 123.98 -178.32 REMARK 500 14 PRO A 66 0.37 -69.75 REMARK 500 14 ASN A 80 -71.52 -49.89 REMARK 500 14 ASP A 96 -179.40 -175.53 REMARK 500 14 ALA A 119 44.78 -94.36 REMARK 500 14 SER A 126 78.25 -105.18 REMARK 500 15 ALA A 3 -169.52 -100.68 REMARK 500 15 ALA A 5 -170.71 51.47 REMARK 500 15 SER A 6 155.70 64.15 REMARK 500 15 ARG A 7 -57.16 -152.80 REMARK 500 15 PHE A 44 34.24 -93.39 REMARK 500 15 ALA A 45 23.77 49.61 REMARK 500 15 THR A 70 45.78 -162.75 REMARK 500 15 SER A 72 147.90 61.58 REMARK 500 15 ALA A 119 35.41 -172.82 REMARK 500 15 ALA A 120 33.32 -155.19 REMARK 500 15 SER A 126 104.17 -167.13 REMARK 500 15 GLN A 127 28.77 -153.90 REMARK 500 16 SER A 6 172.74 -53.91 REMARK 500 16 PHE A 44 38.00 -94.41 REMARK 500 16 ALA A 45 27.31 46.49 REMARK 500 16 GLU A 52 45.46 -103.99 REMARK 500 16 THR A 53 121.32 -174.76 REMARK 500 16 ARG A 91 -1.77 75.84 REMARK 500 16 VAL A 94 130.90 -23.31 REMARK 500 16 ASP A 96 -179.96 -174.89 REMARK 500 16 LYS A 114 30.39 -97.29 REMARK 500 16 GLN A 116 27.67 -162.54 REMARK 500 16 SER A 129 -66.76 -145.89 REMARK 500 17 PHE A 44 34.54 -92.98 REMARK 500 17 ALA A 45 23.16 49.13 REMARK 500 17 GLU A 52 37.33 -99.83 REMARK 500 17 SER A 72 -166.17 -101.75 REMARK 500 17 ALA A 115 32.46 -99.23 REMARK 500 17 ALA A 120 40.19 -172.79 REMARK 500 17 ASP A 121 49.61 -152.06 REMARK 500 18 ALA A 3 -169.67 -101.21 REMARK 500 18 SER A 6 169.53 62.16 REMARK 500 18 ARG A 7 -41.95 -140.32 REMARK 500 18 ALA A 45 -1.55 89.77 REMARK 500 18 GLU A 52 39.40 -97.54 REMARK 500 18 SER A 72 -164.75 -106.03 REMARK 500 18 ASP A 96 -179.14 -174.11 REMARK 500 18 LYS A 114 33.54 -99.10 REMARK 500 18 GLN A 116 -73.01 -120.02 REMARK 500 18 ALA A 118 -39.36 -170.82 REMARK 500 18 ASN A 125 115.24 -168.85 REMARK 500 18 GLN A 127 148.42 -172.56 REMARK 500 19 ALA A 45 1.90 92.60 REMARK 500 19 GLU A 52 46.23 -102.40 REMARK 500 19 THR A 53 122.44 -174.84 REMARK 500 19 ASP A 93 97.25 -61.73 REMARK 500 19 ASP A 96 -178.61 -176.30 REMARK 500 19 LYS A 114 31.57 -95.90 REMARK 500 19 ALA A 118 -39.88 -130.99 REMARK 500 19 ASP A 121 -75.85 69.31 REMARK 500 19 THR A 122 -170.79 51.39 REMARK 500 19 GLN A 127 -74.56 -159.56 REMARK 500 19 GLN A 130 77.30 -106.61 REMARK 500 19 ASN A 131 40.15 -167.93 REMARK 500 20 ALA A 3 -172.04 53.95 REMARK 500 20 ALA A 5 -170.68 51.34 REMARK 500 20 SER A 6 151.00 65.05 REMARK 500 20 ARG A 7 -56.83 -150.53 REMARK 500 20 LEU A 8 -173.60 -67.44 REMARK 500 20 PHE A 44 35.12 -91.27 REMARK 500 20 ALA A 45 25.06 48.85 REMARK 500 20 GLU A 52 45.51 -106.33 REMARK 500 20 THR A 53 122.70 -177.43 REMARK 500 20 ASN A 80 -71.67 -49.99 REMARK 500 20 ARG A 91 -5.72 77.48 REMARK 500 20 VAL A 94 130.85 -25.96 REMARK 500 20 ALA A 115 45.36 -171.55 REMARK 500 20 ALA A 119 49.82 -90.89 REMARK 500 20 ALA A 120 26.61 -151.22 REMARK 500 20 ASP A 121 -45.51 -132.65 REMARK 500 20 GLN A 127 -64.66 -109.24 REMARK 500 20 SER A 129 116.28 -167.13 REMARK 500 20 ASN A 131 -46.87 -147.40 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR A 1
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H3I RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN REMARK 900 RELATED ID: 2NV3 RELATED DB: PDB REMARK 900 L8A MUTANT OF HIV-1 MYRMA
DBREF 2JMG A 2 132 UNP Q72497 Q72497_9HIV1 2 132
SEQADV 2JMG ARG A 7 UNP Q72497 VAL 7 ENGINEERED
SEQRES 1 A 131 GLY ALA ARG ALA SER ARG LEU SER GLY GLY GLU LEU ASP SEQRES 2 A 131 LYS TRP GLU LYS ILE ARG LEU ARG PRO GLY GLY LYS LYS SEQRES 3 A 131 GLN TYR LYS LEU LYS HIS ILE VAL TRP ALA SER ARG GLU SEQRES 4 A 131 LEU GLU ARG PHE ALA VAL ASN PRO GLY LEU LEU GLU THR SEQRES 5 A 131 SER GLU GLY CYS ARG GLN ILE LEU GLY GLN LEU GLN PRO SEQRES 6 A 131 SER LEU GLN THR GLY SER GLU GLU LEU ARG SER LEU TYR SEQRES 7 A 131 ASN THR ILE ALA VAL LEU TYR CYS VAL HIS GLN ARG ILE SEQRES 8 A 131 ASP VAL LYS ASP THR LYS GLU ALA LEU ASP LYS ILE GLU SEQRES 9 A 131 GLU GLU GLN ASN LYS SER LYS LYS LYS ALA GLN GLN ALA SEQRES 10 A 131 ALA ALA ASP THR GLY ASN ASN SER GLN VAL SER GLN ASN SEQRES 11 A 131 TYR
HET MYR A 1 42
HETNAM MYR MYRISTIC ACID
FORMUL 2 MYR C14 H28 O2
HELIX 1 1 SER A 9 GLU A 17 1 9 HELIX 2 2 LYS A 30 PHE A 44 1 15 HELIX 3 3 ASN A 47 LEU A 51 5 5 HELIX 4 4 THR A 53 GLN A 65 1 13 HELIX 5 5 PRO A 66 GLY A 71 5 6 HELIX 6 6 SER A 72 GLN A 90 1 19 HELIX 7 7 ASP A 96 ALA A 120 1 25
LINK N GLY A 2 C1 MYR A 1 1555 1555 1.33
SITE 1 AC1 5 GLY A 2 TRP A 16 ILE A 34 LEU A 51 SITE 2 AC1 5 LEU A 85
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000