10 20 30 40 50 60 70 80 2JMA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN 25-OCT-06 2JMA
TITLE R21A SPC-SH3:P41 COMPLEX
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECTRIN ALPHA CHAIN, BRAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 965-1025; COMPND 5 SYNONYM: SPECTRIN, NON-ERYTHROID ALPHA CHAIN, FODRIN ALPHA COMPND 6 CHAIN, ALPHA SPECTRIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: P41 PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SPTAN1, SPTA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3D; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES
KEYWDS SH3 DOMAIN, P41-BOUND, STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.A.J.VAN NULAND,S.CASARES,E.AB,H.ESHUIS,O.LOPEZ-MAYORGA, AUTHOR 2 F.CONEJERO-LARA
REVDAT 2 24-FEB-09 2JMA 1 VERSN REVDAT 1 24-APR-07 2JMA 0
JRNL AUTH S.CASARES,E.AB,H.ESHUIS,O.LOPEZ-MAYORGA, JRNL AUTH 2 N.A.J.VAN NULAND,F.CONEJERO-LARA JRNL TITL THE HIGH-RESOLUTION NMR STRUCTURE OF THE R21A JRNL TITL 2 SPC-SH3:P41 COMPLEX: UNDERSTANDING THE JRNL TITL 3 DETERMINANTS OF BINDING AFFINITY BY COMPARISON JRNL TITL 4 WITH ABL-SH3 JRNL REF BMC STRUCT.BIOL. V. 7 22 2007 JRNL REFN ESSN 1472-6807 JRNL PMID 17407569 JRNL DOI 10.1186/1472-6807-7-22
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL REFINEMENT IN EXPLICIT SOLVENT REMARK 3 WITHIN ARIA
REMARK 4 REMARK 4 2JMA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-06. REMARK 100 THE RCSB ID CODE IS RCSB100010.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 2 MM R21A SPC-SH3, 5.2 MM REMARK 210 P41, 90 % H2O, 10 % D2O, 20 MM REMARK 210 D5-GLYCINE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, ARIA, HADDOCK 1.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 INTERACTION ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 61.24 -117.43 REMARK 500 1 ASN A 47 -58.02 60.21 REMARK 500 1 ASP A 48 -9.86 -155.53 REMARK 500 2 ASP A 2 76.08 -102.96 REMARK 500 2 ASN A 47 -56.47 59.58 REMARK 500 2 ASP A 48 -8.40 -161.37 REMARK 500 2 SER B 3 31.43 -82.76 REMARK 500 3 LYS A 6 -151.35 172.94 REMARK 500 3 ASN A 47 -55.94 60.39 REMARK 500 3 ASP A 48 -7.12 -161.44 REMARK 500 3 SER B 3 46.25 -96.43 REMARK 500 4 LYS A 6 -151.88 169.49 REMARK 500 4 SER A 36 36.15 -143.50 REMARK 500 4 ASN A 47 -55.62 63.27 REMARK 500 4 ASP A 48 -9.81 -166.17 REMARK 500 4 SER B 3 38.54 -88.64 REMARK 500 5 ASN A 47 -61.89 58.33 REMARK 500 5 ASP A 48 -10.06 -151.70 REMARK 500 5 SER B 3 38.98 -86.06 REMARK 500 6 GLU A 3 59.08 -150.28 REMARK 500 6 LYS A 6 -149.69 173.98 REMARK 500 6 ASN A 47 -56.65 61.80 REMARK 500 6 ASP A 48 -7.37 -165.65 REMARK 500 6 SER B 3 55.30 -94.71 REMARK 500 7 LYS A 6 -152.97 171.91 REMARK 500 7 ASN A 47 -56.28 57.53 REMARK 500 7 ASP A 48 -11.54 -154.72 REMARK 500 7 SER B 3 40.77 -92.00 REMARK 500 8 GLU A 3 -9.89 -59.78 REMARK 500 8 ASN A 47 -65.07 57.00 REMARK 500 8 ASP A 48 -5.98 -150.36 REMARK 500 8 SER B 3 49.43 -100.15 REMARK 500 9 GLU A 3 58.24 -151.38 REMARK 500 9 LYS A 6 -152.31 173.36 REMARK 500 9 SER A 36 35.57 -142.01 REMARK 500 9 ASN A 47 -54.55 60.47 REMARK 500 9 ASP A 48 -11.46 -167.06 REMARK 500 9 SER B 3 53.53 -93.26 REMARK 500 10 ASN A 47 -56.11 61.32 REMARK 500 10 ASP A 48 -8.48 -165.25 REMARK 500 10 SER B 3 51.60 -105.84 REMARK 500 11 LYS A 6 -143.89 171.53 REMARK 500 11 ASN A 47 -57.23 63.00 REMARK 500 11 ASP A 48 -5.85 -164.06 REMARK 500 11 SER B 3 51.86 -100.06 REMARK 500 12 ASN A 47 -56.24 60.21 REMARK 500 12 ASP A 48 -8.42 -162.09 REMARK 500 13 GLU A 3 55.05 -144.70 REMARK 500 13 LYS A 6 -152.92 172.84 REMARK 500 13 ASN A 47 -55.78 62.40 REMARK 500 13 ASP A 48 -11.29 -166.93 REMARK 500 14 ASP A 2 67.24 -119.97 REMARK 500 14 ASN A 47 -56.58 60.47 REMARK 500 14 ASP A 48 -8.74 -161.64 REMARK 500 14 SER B 3 57.33 -97.28 REMARK 500 15 LYS A 6 -160.65 -127.96 REMARK 500 15 ASN A 47 91.86 33.07 REMARK 500 15 ASP A 48 -8.70 57.30 REMARK 500 16 ASN A 47 -57.38 62.43 REMARK 500 16 ASP A 48 -8.56 -163.61 REMARK 500 16 SER B 3 50.01 -108.61 REMARK 500 17 ASN A 47 -58.26 59.31 REMARK 500 17 ASP A 48 -10.04 -158.70 REMARK 500 17 SER B 3 57.02 -103.07 REMARK 500 18 GLU A 3 58.38 -148.19 REMARK 500 18 LYS A 6 -146.47 173.50 REMARK 500 18 SER A 36 30.26 -141.19 REMARK 500 18 ASN A 47 -56.45 60.54 REMARK 500 18 ASP A 48 -8.21 -161.16 REMARK 500 19 ASP A 2 67.17 -114.88 REMARK 500 19 ASN A 47 -58.21 57.39 REMARK 500 19 ASP A 48 -9.05 -155.76 REMARK 500 19 SER B 3 63.37 -114.01 REMARK 500 20 GLU A 3 56.98 -143.01 REMARK 500 20 LYS A 6 -151.90 173.40 REMARK 500 20 SER A 36 36.86 -142.61 REMARK 500 20 ASN A 47 -56.58 62.75 REMARK 500 20 ASP A 48 -4.68 -163.04 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JM8 RELATED DB: PDB REMARK 900 R21A SPC-SH3 FREE REMARK 900 RELATED ID: 2JM9 RELATED DB: PDB REMARK 900 R21A SPC-SH3 BOUND REMARK 900 RELATED ID: 7305 RELATED DB: BMRB REMARK 900 R21A SPC-SH3 FREE REMARK 900 RELATED ID: 7306 RELATED DB: BMRB REMARK 900 R21A SPC-SH3 BOUND
DBREF 2JMA A 2 62 UNP P07751 SPTA2_CHICK 965 1025 DBREF 2JMA B 0 10 PDB 2JMA 2JMA 0 10
SEQADV 2JMA MET A 1 UNP P07751 CLONING ARTIFACT SEQADV 2JMA ALA A 21 UNP P07751 ARG 984 ENGINEERED
SEQRES 1 A 62 MET ASP GLU THR GLY LYS GLU LEU VAL LEU ALA LEU TYR SEQRES 2 A 62 ASP TYR GLN GLU LYS SER PRO ALA GLU VAL THR MET LYS SEQRES 3 A 62 LYS GLY ASP ILE LEU THR LEU LEU ASN SER THR ASN LYS SEQRES 4 A 62 ASP TRP TRP LYS VAL GLU VAL ASN ASP ARG GLN GLY PHE SEQRES 5 A 62 VAL PRO ALA ALA TYR VAL LYS LYS LEU ASP SEQRES 1 B 11 ACE ALA PRO SER TYR SER PRO PRO PRO PRO PRO
HET ACE B 0 6
HETNAM ACE ACETYL GROUP
FORMUL 2 ACE C2 H4 O
SHEET 1 A 5 ARG A 49 PRO A 54 0 SHEET 2 A 5 TRP A 41 VAL A 46 -1 N TRP A 42 O VAL A 53 SHEET 3 A 5 ILE A 30 ASN A 35 -1 N LEU A 34 O LYS A 43 SHEET 4 A 5 LEU A 8 ALA A 11 -1 N VAL A 9 O LEU A 31 SHEET 5 A 5 VAL A 58 LYS A 60 -1 O LYS A 59 N LEU A 10
LINK C ACE B 0 N ALA B 1 1555 1555 1.33
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000