10 20 30 40 50 60 70 80 2JJL - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN 14-APR-08 2JJL
TITLE STRUCTURE OF AVIAN REOVIRUS SIGMA C 117-326, P321 CRYSTAL TITLE 2 FORM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGMA-C CAPSID PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 117-326; COMPND 5 SYNONYM: SIGMA-3 PROTEIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AVIAN REOVIRUS; SOURCE 3 ORGANISM_TAXID: 38170; SOURCE 4 STRAIN: S1133; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28C-PLUS; SOURCE 10 OTHER_DETAILS: THE AVIAN REOVIRUS STRAIN S1133 WAS SOURCE 11 ORIGINALLY PROVIDED BY DR. PHILIP I.MARCUS WHEN DR. SOURCE 12 J.BENAVENTE WAS A ROCHE VISITING SCIENTIST IN THE SOURCE 13 LABORATORY OF DR. A.SHATKIN
KEYWDS ALPHA-HELICAL COILED COIL, RECEPTOR-BINDING, TRIPLE KEYWDS 2 BETA-SPIRAL, VIRAL PROTEIN, VIRION, COILED COIL, KEYWDS 3 BETA-BARREL
EXPDTA X-RAY DIFFRACTION
AUTHOR P.GUARDADO-CALVO,G.C.FOX,A.L.LLAMAS-SAIZ,J.BENAVENTE, AUTHOR 2 M.J.VAN RAAIJ
REVDAT 2 15-SEP-09 2JJL 1 JRNL REMARK REVDAT 1 13-JAN-09 2JJL 0
JRNL AUTH P.GUARDADO-CALVO,G.C.FOX,A.L.LLAMAS-SAIZ, JRNL AUTH 2 M.J.VAN RAAIJ JRNL TITL CRYSTALLOGRAPHIC STRUCTURE OF THE ALPHA-HELICAL JRNL TITL 2 TRIPLE COILED-COIL DOMAIN OF AVIAN REOVIRUS S1133 JRNL TITL 3 FIBRE. JRNL REF J.GEN.VIROL. V. 90 672 2009 JRNL REFN ISSN 0022-1317 JRNL PMID 19218213 JRNL DOI 10.1099/VIR.0.008276-0
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.VAN RAAIJ,X.L.HERMO-PARRADO,P.GUARDADO-CALVO, REMARK 1 AUTH 2 G.C.FOX,A.L.LLAMAS-SAIZ,C.COSTAS,J.MARTINEZ-COSTAS, REMARK 1 AUTH 3 J.BENAVENTE REMARK 1 TITL CRYSTALLIZATION OF THE C-TERMINAL GLOBULAR DOMAIN REMARK 1 TITL 2 OF AVIAN REOVIRUS FIBRE. REMARK 1 REF ACTA CRYSTALLOGR., SECT.F V. 61 651 2005 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 16511119 REMARK 1 DOI 10.1107/S1744309105016933 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.GUARDADO-CALVO,G.C.FOX,X.L.HERMO-PARRADO, REMARK 1 AUTH 2 A.L.LLAMAS-SAIZ,C.COSTAS,J.MARTINEZ-COSTAS, REMARK 1 AUTH 3 J.BENAVENTE,M.J.VAN RAAIJ REMARK 1 TITL STRUCTURE OF THE CARBOXY-TERMINAL RECEPTOR-BINDING REMARK 1 TITL 2 DOMAIN OF AVIAN REOVIRUS FIBRE SIGMAC. REMARK 1 REF J.MOL.BIOL. V. 354 137 2005 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 16236316 REMARK 1 DOI 10.1016/J.JMB.2005.09.034
REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 17714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3116 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 268 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 ALL ATOMS : 1762 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.19000 REMARK 3 B22 (A**2) : 2.19000 REMARK 3 B33 (A**2) : -3.29000 REMARK 3 B12 (A**2) : 1.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.700 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1586 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2157 ; 1.509 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 6.499 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;36.864 ;23.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 243 ;13.095 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.644 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 257 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1194 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 594 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1112 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 126 ; 0.163 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1056 ; 3.225 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1666 ; 4.852 ; 7.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 594 ; 7.171 ;10.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 491 ; 8.862 ;15.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS.
REMARK 4 REMARK 4 2JJL COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-08. REMARK 100 THE PDBE ID CODE IS EBI-35918.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM16 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9840 REMARK 200 MONOCHROMATOR : SI111 DOUBLE-CRYSTAL REMARK 200 OPTICS : RD COATED FLAT AND REMARK 200 TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19318 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.30 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NONE REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 20.0 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 52.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 20.3 REMARK 200 R MERGE FOR SHELL (I) : 0.43 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: CHAIN C OF PDB ENTRY 2VRS REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.7 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6-0.75 M AMMONIUM SULPHATE, REMARK 280 0.1 M TRIS-HCL PH 8.4, 25% GLYCEROL, 50 MM ZINC SULPHATE
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 Y-X,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,Y-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 12620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 77.65700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 38.82850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 67.25293 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 CL CL A1327 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A1328 LIES ON A SPECIAL POSITION. REMARK 375 ZN ZN A1331 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 116 REMARK 465 LEU A 117 REMARK 465 GLN A 118 REMARK 465 THR A 119
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 186 -65.26 68.91 REMARK 500 HIS A 255 75.77 58.00 REMARK 500 ALA A 291 -163.78 -122.19 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1330 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 158 NE2 REMARK 620 2 HIS A 158 NE2 116.6 REMARK 620 3 HIS A 158 NE2 108.5 127.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1331 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 212 OD1 REMARK 620 2 ASP A 212 OD1 102.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1332 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 122 OD1 REMARK 620 2 HIS A 287 ND1 112.4 REMARK 620 3 TYR A 289 OH 114.6 101.0 REMARK 620 N 1 2
REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED.
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1330 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1332
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BSF RELATED DB: PDB REMARK 900 STRUCTURE OF THE C-TERMINAL RECEPTOR-BINDING REMARK 900 DOMAIN OF AVIAN REOVIRUS FIBRE SIGMAC, ZN REMARK 900 CRYSTAL FORM. REMARK 900 RELATED ID: 2VRS RELATED DB: PDB REMARK 900 STRUCTURE OF AVIAN REOVIRUS SIGMAC117-326, REMARK 900 C2 CRYSTAL FORM
REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FIRST RESIDUE, ILE-116, IS A REMNANT OF THE EXPRESSION REMARK 999 TAG.
DBREF 2JJL A 116 116 PDB 2JJL 2JJL 116 116 DBREF 2JJL A 117 326 UNP Q992I2 SIGC_ARVS1 117 326
SEQRES 1 A 211 ILE LEU GLN THR THR VAL ASP GLY ASN SER THR ALA ILE SEQRES 2 A 211 SER ASN LEU LYS SER ASP ILE SER SER ASN GLY LEU ALA SEQRES 3 A 211 ILE THR ASP LEU GLN ASP ARG VAL LYS SER LEU GLU SER SEQRES 4 A 211 THR ALA SER HIS GLY LEU SER PHE SER PRO PRO LEU SER SEQRES 5 A 211 VAL ALA ASP GLY VAL VAL SER LEU ASP MET ASP PRO TYR SEQRES 6 A 211 PHE CYS SER GLN ARG VAL SER LEU THR SER TYR SER ALA SEQRES 7 A 211 GLU ALA GLN LEU MET GLN PHE ARG TRP MET ALA ARG GLY SEQRES 8 A 211 THR ASN GLY SER SER ASP THR ILE ASP MET THR VAL ASN SEQRES 9 A 211 ALA HIS CYS HIS GLY ARG ARG THR ASP TYR MET MET SER SEQRES 10 A 211 SER THR GLY ASN LEU THR VAL THR SER ASN VAL VAL LEU SEQRES 11 A 211 LEU THR PHE ASP LEU SER ASP ILE THR HIS ILE PRO SER SEQRES 12 A 211 ASP LEU ALA ARG LEU VAL PRO SER ALA GLY PHE GLN ALA SEQRES 13 A 211 ALA SER PHE PRO VAL ASP VAL SER PHE THR ARG ASP SER SEQRES 14 A 211 ALA THR HIS ALA TYR GLN ALA TYR GLY VAL TYR SER SER SEQRES 15 A 211 SER ARG VAL PHE THR ILE THR PHE PRO THR GLY GLY ASP SEQRES 16 A 211 GLY THR ALA ASN ILE ARG SER LEU THR VAL ARG THR GLY SEQRES 17 A 211 ILE ASP THR
HET CL A1327 1 HET CL A1328 1 HET SO4 A1329 5 HET ZN A1330 1 HET ZN A1331 1 HET ZN A1332 1
HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION
FORMUL 4 SO4 O4 S 2- FORMUL 5 CL 2(CL 1-) FORMUL 6 ZN 3(ZN 2+) FORMUL 7 HOH *202(H2 O1)
HELIX 1 1 THR A 120 THR A 155 1 36 HELIX 2 2 ASP A 259 VAL A 264 5 6 HELIX 3 3 SER A 266 ALA A 271 1 6
SHEET 1 AA 2 LEU A 166 ALA A 169 0 SHEET 2 AA 2 VAL A 172 LEU A 175 -1 O VAL A 172 N ALA A 169 SHEET 1 AB 2 CYS A 182 GLN A 184 0 SHEET 2 AB 2 LEU A 188 SER A 190 -1 O THR A 189 N SER A 183 SHEET 1 AC 5 ASN A 236 VAL A 239 0 SHEET 2 AC 5 ALA A 313 ASP A 325 -1 O ALA A 313 N VAL A 239 SHEET 3 AC 5 ARG A 226 THR A 234 -1 O THR A 227 N ILE A 324 SHEET 4 AC 5 THR A 213 HIS A 223 -1 O ASP A 215 N THR A 234 SHEET 5 AC 5 GLN A 196 ASN A 208 -1 O GLN A 196 N CYS A 222 SHEET 1 AD 7 ASN A 236 VAL A 239 0 SHEET 2 AD 7 ALA A 313 ASP A 325 -1 O ALA A 313 N VAL A 239 SHEET 3 AD 7 PHE A 274 ARG A 282 -1 O ASP A 277 N ARG A 321 SHEET 4 AD 7 ALA A 285 SER A 297 -1 O ALA A 285 N ARG A 282 SHEET 5 AD 7 VAL A 300 PRO A 306 -1 O VAL A 300 N SER A 296 SHEET 6 AD 7 VAL A 243 ASP A 249 -1 O VAL A 244 N PHE A 305 SHEET 7 AD 7 GLN A 196 ASN A 208 -1 O ARG A 205 N THR A 247
LINK ZN ZN A1330 NE2 HIS A 158 1555 1555 2.12 LINK ZN ZN A1330 NE2 HIS A 158 1555 2655 1.74 LINK ZN ZN A1330 NE2 HIS A 158 1555 3665 1.93 LINK ZN ZN A1331 OD1 ASP A 212 1555 5555 2.11 LINK ZN ZN A1331 OD1 ASP A 212 1555 1555 2.01 LINK ZN ZN A1332 ND1 HIS A 287 1555 3666 2.21 LINK ZN ZN A1332 OH TYR A 289 1555 3666 2.29 LINK ZN ZN A1332 OD1 ASP A 122 1555 1555 1.98
CISPEP 1 PRO A 164 PRO A 165 0 6.96
SITE 1 AC1 1 ASN A 124 SITE 1 AC2 1 ASN A 138 SITE 1 AC3 3 ARG A 201 THR A 281 SER A 284 SITE 1 AC4 2 HIS A 158 HOH A2202 SITE 1 AC5 2 ASP A 212 THR A 213 SITE 1 AC6 3 ASP A 122 HIS A 287 TYR A 289
CRYST1 77.657 77.657 121.449 90.00 90.00 120.00 P 3 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012877 0.007435 0.000000 0.00000
SCALE2 0.000000 0.014869 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008234 0.00000