10 20 30 40 50 60 70 80 2JC2 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER METAL BINDING PROTEIN 19-DEC-06 2JC2
TITLE THE CRYSTAL STRUCTURE OF THE NATURAL F112L HUMAN SORCIN TITLE 2 MUTANT
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORCIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 22 KDA PROTEIN, CP-22, V19, F112L HUMAN SORCIN COMPND 5 MUTANT; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: HEART, MUSCLE, BRAIN AND ADRENAL MEDULLA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B
KEYWDS RYANODINE RECEPTOR INTERACTING PROTEIN, CALCIUM BINDING KEYWDS 2 PROTEIN, NATURAL F112L SORCIN MUTANT, CALCIUM, METAL KEYWDS 3 BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR S.FRANCESCHINI,A.ILARI,G.COLOTTI,E.CHIANCONE
REVDAT 3 24-FEB-09 2JC2 1 VERSN REVDAT 2 15-JAN-08 2JC2 1 JRNL ATOM REVDAT 1 28-AUG-07 2JC2 0
JRNL AUTH S.FRANCESCHINI,A.ILARI,D.VERZILI,C.ZAMPARELLI, JRNL AUTH 2 A.ANTARAMIAN,A.RUEDA,H.H.VALDIVIA,E.CHIANCONE, JRNL AUTH 3 G.COLOTTI JRNL TITL MOLECULAR BASIS FOR THE IMPAIRED FUNCTION OF THE JRNL TITL 2 NATURAL F112L SORCIN MUTANT: X-RAY CRYSTAL JRNL TITL 3 STRUCTURE, CALCIUM AFFINITY, AND INTERACTION WITH JRNL TITL 4 ANNEXIN VII AND THE RYANODINE RECEPTOR. JRNL REF FASEB J. V. 22 295 2008 JRNL REFN ISSN 0892-6638 JRNL PMID 17699613 JRNL DOI 10.1096/FJ.07-8988COM
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.ILARI,K.A.JOHNSON,V.NASTOPOULOS,D.VERZILI, REMARK 1 AUTH 2 C.ZAMPARELLI,G.COLOTTI,D.TSERNOGLOU,E.CHIANCONE REMARK 1 TITL THE CRYSTAL STRUCTURE OF THE SORCIN CALCIUM REMARK 1 TITL 2 BINDING DOMAIN PROVIDES A MODEL OF CALCIUM- REMARK 1 TITL 3 DEPENDENT PROCESSES IN THE FULL LENGTH PROTEIN REMARK 1 REF J.MOL.BIOL. V. 317 447 2002 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 11922676 REMARK 1 DOI 10.1006/JMBI.2002.5417 REMARK 1 REFERENCE 2 REMARK 1 AUTH X.XIE,M.D.DWYER,L.SWENSON,M.H.PARKER,M.C.BOTFIELD REMARK 1 TITL CRYSTAL STRUCTURE OF CALCIUM-FREE HUMAN SORCIN: A REMARK 1 TITL 2 MEMBER OF THE PENTA-EF-HAND PROTEIN FAMILY REMARK 1 REF PROTEIN SCI. V. 10 2419 2001 REMARK 1 REFN ISSN 0961-8368 REMARK 1 PMID 11714909 REMARK 1 DOI 10.1110/PS.PS.36701
REMARK 2 REMARK 2 RESOLUTION. 2.5 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 23442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1230 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1512 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5182 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.287 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.596 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5306 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7179 ; 0.851 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 660 ; 4.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 261 ;36.666 ;23.870 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 870 ;15.456 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;15.040 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 780 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4078 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2454 ; 0.167 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3753 ; 0.291 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 183 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 65 ; 0.147 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3397 ; 0.260 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5265 ; 0.466 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2200 ; 0.529 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1914 ; 0.842 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 33 A 198 1 REMARK 3 1 C 33 C 198 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1292 ; 0.03 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1292 ; 0.01 ; 0.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 33 B 198 1 REMARK 3 1 D 33 D 198 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 B (A): 1292 ; 0.00 ; 0.05 REMARK 3 TIGHT THERMAL 2 B (A**2): 1292 ; 0.01 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. RESIDUES FROM M1 TO Q32 ARE MISSING IN THE REMARK 3 STRUCTURE BECAUSE OF AN INSUFFICIENT ELECTRON DENSITY
REMARK 4 REMARK 4 2JC2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-DEC-06. REMARK 100 THE PDBE ID CODE IS EBI-30848.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9340 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.50 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NONE REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 5.2 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.3 REMARK 200 R MERGE FOR SHELL (I) : 0.60 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JUO REMARK 200 REMARK 200 REMARK: NONE
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE 1.0M, PH 5.7, REMARK 280 12% V/V DIOXANE
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 209.89133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.94567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 157.41850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.47283 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 262.36417 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, PHE 112 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, PHE 112 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN C, PHE 112 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN D, PHE 112 TO LEU
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 TYR A 3 REMARK 465 PRO A 4 REMARK 465 GLY A 5 REMARK 465 HIS A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 TYR A 13 REMARK 465 TYR A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 TYR A 18 REMARK 465 GLY A 19 REMARK 465 GLY A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 ALA A 26 REMARK 465 PHE A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 GLN A 30 REMARK 465 THR A 31 REMARK 465 GLN A 32 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 TYR B 3 REMARK 465 PRO B 4 REMARK 465 GLY B 5 REMARK 465 HIS B 6 REMARK 465 PRO B 7 REMARK 465 GLY B 8 REMARK 465 ALA B 9 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 TYR B 13 REMARK 465 TYR B 14 REMARK 465 PRO B 15 REMARK 465 GLY B 16 REMARK 465 GLY B 17 REMARK 465 TYR B 18 REMARK 465 GLY B 19 REMARK 465 GLY B 20 REMARK 465 ALA B 21 REMARK 465 PRO B 22 REMARK 465 GLY B 23 REMARK 465 GLY B 24 REMARK 465 PRO B 25 REMARK 465 ALA B 26 REMARK 465 PHE B 27 REMARK 465 PRO B 28 REMARK 465 GLY B 29 REMARK 465 GLN B 30 REMARK 465 THR B 31 REMARK 465 GLN B 32 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 TYR C 3 REMARK 465 PRO C 4 REMARK 465 GLY C 5 REMARK 465 HIS C 6 REMARK 465 PRO C 7 REMARK 465 GLY C 8 REMARK 465 ALA C 9 REMARK 465 GLY C 10 REMARK 465 GLY C 11 REMARK 465 GLY C 12 REMARK 465 TYR C 13 REMARK 465 TYR C 14 REMARK 465 PRO C 15 REMARK 465 GLY C 16 REMARK 465 GLY C 17 REMARK 465 TYR C 18 REMARK 465 GLY C 19 REMARK 465 GLY C 20 REMARK 465 ALA C 21 REMARK 465 PRO C 22 REMARK 465 GLY C 23 REMARK 465 GLY C 24 REMARK 465 PRO C 25 REMARK 465 ALA C 26 REMARK 465 PHE C 27 REMARK 465 PRO C 28 REMARK 465 GLY C 29 REMARK 465 GLN C 30 REMARK 465 THR C 31 REMARK 465 GLN C 32 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 TYR D 3 REMARK 465 PRO D 4 REMARK 465 GLY D 5 REMARK 465 HIS D 6 REMARK 465 PRO D 7 REMARK 465 GLY D 8 REMARK 465 ALA D 9 REMARK 465 GLY D 10 REMARK 465 GLY D 11 REMARK 465 GLY D 12 REMARK 465 TYR D 13 REMARK 465 TYR D 14 REMARK 465 PRO D 15 REMARK 465 GLY D 16 REMARK 465 GLY D 17 REMARK 465 TYR D 18 REMARK 465 GLY D 19 REMARK 465 GLY D 20 REMARK 465 ALA D 21 REMARK 465 PRO D 22 REMARK 465 GLY D 23 REMARK 465 GLY D 24 REMARK 465 PRO D 25 REMARK 465 ALA D 26 REMARK 465 PHE D 27 REMARK 465 PRO D 28 REMARK 465 GLY D 29 REMARK 465 GLN D 30 REMARK 465 THR D 31 REMARK 465 GLN D 32
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 52 CG OD1 OD2 REMARK 470 LYS A 96 CD CE NZ REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 LYS A 153 CE NZ REMARK 470 ARG B 84 CD NE CZ NH1 NH2 REMARK 470 GLN B 107 CD OE1 NE2 REMARK 470 LYS B 127 CD CE NZ REMARK 470 LYS C 96 CD CE NZ REMARK 470 GLU C 124 CD OE1 OE2 REMARK 470 LYS C 153 CE NZ REMARK 470 ARG D 84 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 127 CD CE NZ REMARK 470 LYS D 153 CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 84 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG C 84 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG C 84 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 45 23.00 -70.11 REMARK 500 ASP A 115 -3.27 -161.89 REMARK 500 ARG A 116 13.48 48.67 REMARK 500 ARG B 135 72.27 67.70 REMARK 500 GLN C 45 23.01 -69.82 REMARK 500 ASP C 115 -3.24 -161.88 REMARK 500 ARG C 116 13.59 48.67 REMARK 500 ARG D 135 71.82 68.15 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D1199
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JUO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CALCIUM-FREE HUMAN REMARK 900 SORCIN: A MEMBER OFTHE PENTA-EF-HAND REMARK 900 PROTEIN FAMILY
REMARK 999 REMARK 999 SEQUENCE REMARK 999 F112L IS A NATURAL HUMAN SORCIN MUTANT.
DBREF 2JC2 A 1 198 UNP P30626 SORCN_HUMAN 1 198 DBREF 2JC2 B 1 198 UNP P30626 SORCN_HUMAN 1 198 DBREF 2JC2 C 1 198 UNP P30626 SORCN_HUMAN 1 198 DBREF 2JC2 D 1 198 UNP P30626 SORCN_HUMAN 1 198
SEQADV 2JC2 LEU A 112 UNP P30626 PHE 112 ENGINEERED MUTATION SEQADV 2JC2 LEU B 112 UNP P30626 PHE 112 ENGINEERED MUTATION SEQADV 2JC2 LEU C 112 UNP P30626 PHE 112 ENGINEERED MUTATION SEQADV 2JC2 LEU D 112 UNP P30626 PHE 112 ENGINEERED MUTATION
SEQRES 1 A 198 MET ALA TYR PRO GLY HIS PRO GLY ALA GLY GLY GLY TYR SEQRES 2 A 198 TYR PRO GLY GLY TYR GLY GLY ALA PRO GLY GLY PRO ALA SEQRES 3 A 198 PHE PRO GLY GLN THR GLN ASP PRO LEU TYR GLY TYR PHE SEQRES 4 A 198 ALA ALA VAL ALA GLY GLN ASP GLY GLN ILE ASP ALA ASP SEQRES 5 A 198 GLU LEU GLN ARG CYS LEU THR GLN SER GLY ILE ALA GLY SEQRES 6 A 198 GLY TYR LYS PRO PHE ASN LEU GLU THR CYS ARG LEU MET SEQRES 7 A 198 VAL SER MET LEU ASP ARG ASP MET SER GLY THR MET GLY SEQRES 8 A 198 PHE ASN GLU PHE LYS GLU LEU TRP ALA VAL LEU ASN GLY SEQRES 9 A 198 TRP ARG GLN HIS PHE ILE SER LEU ASP THR ASP ARG SER SEQRES 10 A 198 GLY THR VAL ASP PRO GLN GLU LEU GLN LYS ALA LEU THR SEQRES 11 A 198 THR MET GLY PHE ARG LEU SER PRO GLN ALA VAL ASN SER SEQRES 12 A 198 ILE ALA LYS ARG TYR SER THR ASN GLY LYS ILE THR PHE SEQRES 13 A 198 ASP ASP TYR ILE ALA CYS CYS VAL LYS LEU ARG ALA LEU SEQRES 14 A 198 THR ASP SER PHE ARG ARG ARG ASP THR ALA GLN GLN GLY SEQRES 15 A 198 VAL VAL ASN PHE PRO TYR ASP ASP PHE ILE GLN CYS VAL SEQRES 16 A 198 MET SER VAL SEQRES 1 B 198 MET ALA TYR PRO GLY HIS PRO GLY ALA GLY GLY GLY TYR SEQRES 2 B 198 TYR PRO GLY GLY TYR GLY GLY ALA PRO GLY GLY PRO ALA SEQRES 3 B 198 PHE PRO GLY GLN THR GLN ASP PRO LEU TYR GLY TYR PHE SEQRES 4 B 198 ALA ALA VAL ALA GLY GLN ASP GLY GLN ILE ASP ALA ASP SEQRES 5 B 198 GLU LEU GLN ARG CYS LEU THR GLN SER GLY ILE ALA GLY SEQRES 6 B 198 GLY TYR LYS PRO PHE ASN LEU GLU THR CYS ARG LEU MET SEQRES 7 B 198 VAL SER MET LEU ASP ARG ASP MET SER GLY THR MET GLY SEQRES 8 B 198 PHE ASN GLU PHE LYS GLU LEU TRP ALA VAL LEU ASN GLY SEQRES 9 B 198 TRP ARG GLN HIS PHE ILE SER LEU ASP THR ASP ARG SER SEQRES 10 B 198 GLY THR VAL ASP PRO GLN GLU LEU GLN LYS ALA LEU THR SEQRES 11 B 198 THR MET GLY PHE ARG LEU SER PRO GLN ALA VAL ASN SER SEQRES 12 B 198 ILE ALA LYS ARG TYR SER THR ASN GLY LYS ILE THR PHE SEQRES 13 B 198 ASP ASP TYR ILE ALA CYS CYS VAL LYS LEU ARG ALA LEU SEQRES 14 B 198 THR ASP SER PHE ARG ARG ARG ASP THR ALA GLN GLN GLY SEQRES 15 B 198 VAL VAL ASN PHE PRO TYR ASP ASP PHE ILE GLN CYS VAL SEQRES 16 B 198 MET SER VAL SEQRES 1 C 198 MET ALA TYR PRO GLY HIS PRO GLY ALA GLY GLY GLY TYR SEQRES 2 C 198 TYR PRO GLY GLY TYR GLY GLY ALA PRO GLY GLY PRO ALA SEQRES 3 C 198 PHE PRO GLY GLN THR GLN ASP PRO LEU TYR GLY TYR PHE SEQRES 4 C 198 ALA ALA VAL ALA GLY GLN ASP GLY GLN ILE ASP ALA ASP SEQRES 5 C 198 GLU LEU GLN ARG CYS LEU THR GLN SER GLY ILE ALA GLY SEQRES 6 C 198 GLY TYR LYS PRO PHE ASN LEU GLU THR CYS ARG LEU MET SEQRES 7 C 198 VAL SER MET LEU ASP ARG ASP MET SER GLY THR MET GLY SEQRES 8 C 198 PHE ASN GLU PHE LYS GLU LEU TRP ALA VAL LEU ASN GLY SEQRES 9 C 198 TRP ARG GLN HIS PHE ILE SER LEU ASP THR ASP ARG SER SEQRES 10 C 198 GLY THR VAL ASP PRO GLN GLU LEU GLN LYS ALA LEU THR SEQRES 11 C 198 THR MET GLY PHE ARG LEU SER PRO GLN ALA VAL ASN SER SEQRES 12 C 198 ILE ALA LYS ARG TYR SER THR ASN GLY LYS ILE THR PHE SEQRES 13 C 198 ASP ASP TYR ILE ALA CYS CYS VAL LYS LEU ARG ALA LEU SEQRES 14 C 198 THR ASP SER PHE ARG ARG ARG ASP THR ALA GLN GLN GLY SEQRES 15 C 198 VAL VAL ASN PHE PRO TYR ASP ASP PHE ILE GLN CYS VAL SEQRES 16 C 198 MET SER VAL SEQRES 1 D 198 MET ALA TYR PRO GLY HIS PRO GLY ALA GLY GLY GLY TYR SEQRES 2 D 198 TYR PRO GLY GLY TYR GLY GLY ALA PRO GLY GLY PRO ALA SEQRES 3 D 198 PHE PRO GLY GLN THR GLN ASP PRO LEU TYR GLY TYR PHE SEQRES 4 D 198 ALA ALA VAL ALA GLY GLN ASP GLY GLN ILE ASP ALA ASP SEQRES 5 D 198 GLU LEU GLN ARG CYS LEU THR GLN SER GLY ILE ALA GLY SEQRES 6 D 198 GLY TYR LYS PRO PHE ASN LEU GLU THR CYS ARG LEU MET SEQRES 7 D 198 VAL SER MET LEU ASP ARG ASP MET SER GLY THR MET GLY SEQRES 8 D 198 PHE ASN GLU PHE LYS GLU LEU TRP ALA VAL LEU ASN GLY SEQRES 9 D 198 TRP ARG GLN HIS PHE ILE SER LEU ASP THR ASP ARG SER SEQRES 10 D 198 GLY THR VAL ASP PRO GLN GLU LEU GLN LYS ALA LEU THR SEQRES 11 D 198 THR MET GLY PHE ARG LEU SER PRO GLN ALA VAL ASN SER SEQRES 12 D 198 ILE ALA LYS ARG TYR SER THR ASN GLY LYS ILE THR PHE SEQRES 13 D 198 ASP ASP TYR ILE ALA CYS CYS VAL LYS LEU ARG ALA LEU SEQRES 14 D 198 THR ASP SER PHE ARG ARG ARG ASP THR ALA GLN GLN GLY SEQRES 15 D 198 VAL VAL ASN PHE PRO TYR ASP ASP PHE ILE GLN CYS VAL SEQRES 16 D 198 MET SER VAL
HET SO4 A1199 5 HET SO4 A1200 5 HET SO4 C1199 5 HET SO4 C1200 5 HET SO4 B1199 5 HET SO4 D1199 5
HETNAM SO4 SULFATE ION
FORMUL 5 SO4 6(O4 S 2-) FORMUL 6 HOH *140(H2 O1)
HELIX 1 1 LEU A 35 ALA A 41 1 7 HELIX 2 2 ASP A 50 GLY A 62 1 13 HELIX 3 3 ASN A 71 ASP A 83 1 13 HELIX 4 4 GLY A 91 THR A 114 1 24 HELIX 5 5 ASP A 121 GLY A 133 1 13 HELIX 6 6 SER A 137 TYR A 148 1 12 HELIX 7 7 PHE A 156 ASP A 177 1 22 HELIX 8 8 THR A 178 GLN A 181 5 4 HELIX 9 9 TYR A 188 VAL A 198 1 11 HELIX 10 10 ASP B 33 ALA B 41 1 9 HELIX 11 11 ASP B 50 GLY B 62 1 13 HELIX 12 12 ASN B 71 ASP B 83 1 13 HELIX 13 13 GLY B 91 ASP B 113 1 23 HELIX 14 14 ASP B 121 GLY B 133 1 13 HELIX 15 15 SER B 137 TYR B 148 1 12 HELIX 16 16 PHE B 156 ASP B 177 1 22 HELIX 17 17 TYR B 188 SER B 197 1 10 HELIX 18 18 LEU C 35 ALA C 41 1 7 HELIX 19 19 ASP C 50 GLY C 62 1 13 HELIX 20 20 ASN C 71 ASP C 83 1 13 HELIX 21 21 GLY C 91 THR C 114 1 24 HELIX 22 22 ASP C 121 GLY C 133 1 13 HELIX 23 23 SER C 137 TYR C 148 1 12 HELIX 24 24 PHE C 156 ASP C 177 1 22 HELIX 25 25 THR C 178 GLN C 181 5 4 HELIX 26 26 TYR C 188 VAL C 198 1 11 HELIX 27 27 ASP D 33 ALA D 41 1 9 HELIX 28 28 ASP D 50 GLY D 62 1 13 HELIX 29 29 ASN D 71 ASP D 83 1 13 HELIX 30 30 GLY D 91 ASP D 113 1 23 HELIX 31 31 ASP D 121 GLY D 133 1 13 HELIX 32 32 SER D 137 TYR D 148 1 12 HELIX 33 33 PHE D 156 ASP D 177 1 22 HELIX 34 34 TYR D 188 SER D 197 1 10
SHEET 1 AA 2 GLY A 66 LYS A 68 0 SHEET 2 AA 2 GLY C 66 LYS C 68 -1 O GLY C 66 N LYS A 68 SHEET 1 AB 3 THR A 119 VAL A 120 0 SHEET 2 AB 3 LYS A 153 THR A 155 -1 O ILE A 154 N VAL A 120 SHEET 3 AB 3 SER A 149 THR A 150 -1 O THR A 150 N LYS A 153 SHEET 1 AC 2 VAL A 183 PRO A 187 0 SHEET 2 AC 2 VAL B 183 PRO B 187 -1 O VAL B 184 N PHE A 186 SHEET 1 BA 2 GLY B 66 LYS B 68 0 SHEET 2 BA 2 GLY D 66 LYS D 68 -1 O GLY D 66 N LYS B 68 SHEET 1 BB 2 THR B 119 VAL B 120 0 SHEET 2 BB 2 ILE B 154 THR B 155 -1 O ILE B 154 N VAL B 120 SHEET 1 CA 3 THR C 119 VAL C 120 0 SHEET 2 CA 3 LYS C 153 THR C 155 -1 O ILE C 154 N VAL C 120 SHEET 3 CA 3 SER C 149 THR C 150 -1 O THR C 150 N LYS C 153 SHEET 1 CB 2 VAL C 183 PRO C 187 0 SHEET 2 CB 2 VAL D 183 PRO D 187 -1 O VAL D 184 N PHE C 186 SHEET 1 DA 2 THR D 119 VAL D 120 0 SHEET 2 DA 2 ILE D 154 THR D 155 -1 O ILE D 154 N VAL D 120
CISPEP 1 ASN C 151 GLY C 152 0 21.00
SITE 1 AC1 3 SER A 172 ARG A 175 ARG A 176 SITE 1 AC2 3 GLY A 66 TYR A 67 HOH A2023 SITE 1 AC3 6 PHE A 156 ALA C 64 GLY C 66 TYR C 67 SITE 2 AC3 6 ARG C 116 HOH C2034 SITE 1 AC4 3 SER C 172 ARG C 175 ARG C 176 SITE 1 AC5 2 ALA B 64 GLY B 66 SITE 1 AC6 3 PHE B 156 ALA D 64 GLY D 66
CRYST1 64.385 64.385 314.837 90.00 90.00 120.00 P 65 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015532 0.008967 0.000000 0.00000
SCALE2 0.000000 0.017934 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003176 0.00000
MTRIX1 1 0.500280 0.865860 -0.000260 -0.00514 1
MTRIX2 1 0.865860 -0.500280 -0.000310 0.01559 1
MTRIX3 1 -0.000400 -0.000070 -1.000000 -0.02023 1