10 20 30 40 50 60 70 80 2J2H - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 16-AUG-06 2J2H
TITLE THEORETICAL MODEL OF PHAC1 PROTEIN OF INDIGENOUS TITLE 2 PSEUDOMONAS SP.LDC-5
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHA SYNTHASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALPHA BETA HYDROLASE FOLD, RESIDUES 1-187; COMPND 5 EC: 5.3.1.16
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. LDC-5; SOURCE 3 STRAIN: LDC-5; SOURCE 4 VARIANT: FIELD ISOLATE; SOURCE 5 OTHER_DETAILS: MADURAI COLLECTIN OF PHA ACCUMULATING SOURCE 6 PSEUDOMONAS STRAINS.
KEYWDS PHAC1, PSEUDOMONAS SP.LDC-5, HOMOLOGY MODELING, ALPHA BETA KEYWDS 2 HYDROLASE FOLD, HYDROLASE
EXPDTA THEORETICAL MODEL
AUTHOR K.SUJATHA,A.MAHALAKSHMI,R.SHENBAGARATHAI
REVDAT 1 17-AUG-06 2J2H 0
JRNL AUTH K.SUJATHA,A.MAHALAKSHMI,R.SHENBAGARATHAI JRNL TITL THEORETICAL MODEL OF PHAC1 PROTEIN OF INDIGENOUS JRNL TITL 2 PSEUDOMONAS SP. LDC-5 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2J2H COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 16-AUG-2006. REMARK 100 THE EBI ID CODE IS EBI-29722.
REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS MODEL WAS BUILT USING THE STRUCTURE OF ALPHA BETA REMARK 220 HYDROLASES GASTRIC LIPASE
REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CD1 LEU A 162 O ASN A 226 0.51 REMARK 500 NZ LYS A 37 CB LEU A 181 0.79 REMARK 500 CD1 LEU A 161 CG1 ILE A 255 1.03 REMARK 500 CD LYS A 37 C LEU A 181 1.05 REMARK 500 CD LYS A 37 N PRO A 182 1.05 REMARK 500 CD2 LEU A 44 CE2 TYR A 47 1.14 REMARK 500 CD1 LEU A 162 C ASN A 226 1.14 REMARK 500 CG LEU A 162 O ASN A 226 1.27 REMARK 500 CA ALA A 144 ND2 ASN A 149 1.38 REMARK 500 CD LYS A 37 CA LEU A 181 1.58 REMARK 500 CB VAL A 101 CD1 LEU A 229 1.59 REMARK 500 CE LYS A 37 CA LEU A 181 1.66 REMARK 500 C ALA A 144 ND2 ASN A 149 1.67 REMARK 500 CD LYS A 37 CD PRO A 182 1.68 REMARK 500 O ALA A 144 ND2 ASN A 149 1.70 REMARK 500 O ALA A 232 CD PRO A 236 1.70 REMARK 500 CG LEU A 44 CE1 PHE A 185 1.71 REMARK 500 CE LYS A 37 CD PRO A 182 1.79 REMARK 500 CD2 LEU A 44 CD2 TYR A 47 1.79 REMARK 500 OG1 THR A 195 CD PRO A 197 1.79 REMARK 500 O ALA A 144 CG ASN A 149 1.81 REMARK 500 CE LYS A 37 CB LEU A 181 1.84 REMARK 500 CG1 VAL A 101 CD2 HIS A 254 1.84 REMARK 500 N CYS A 73 CG2 VAL A 101 1.86 REMARK 500 CD1 LEU A 162 N ASP A 227 1.88 REMARK 500 CA LYS A 37 NE1 TRP A 42 1.91 REMARK 500 O ALA A 113 CG2 VAL A 116 1.92 REMARK 500 CB LYS A 37 CZ2 TRP A 42 1.93 REMARK 500 O PHE A 173 OD1 ASN A 176 1.93 REMARK 500 CG LYS A 37 N PRO A 182 1.94 REMARK 500 NZ LYS A 37 CA LEU A 181 1.95 REMARK 500 CD2 LEU A 162 O ASN A 226 1.99 REMARK 500 CG1 VAL A 101 NE2 HIS A 254 2.00 REMARK 500 O ALA A 144 CD2 LEU A 172 2.01 REMARK 500 CA CYS A 73 CG2 VAL A 101 2.03 REMARK 500 CB LEU A 104 CG1 VAL A 233 2.04 REMARK 500 CD1 LEU A 161 CD1 ILE A 255 2.05 REMARK 500 CG PRO A 167 CE1 PHE A 169 2.05 REMARK 500 CD PRO A 228 CB HIS A 254 2.05 REMARK 500 O GLU A 165 CD PRO A 167 2.07 REMARK 500 NZ LYS A 37 CG LEU A 181 2.08 REMARK 500 CB ALA A 223 SD MET A 234 2.08 REMARK 500 O TRP A 32 N ASN A 34 2.09 REMARK 500 CG2 VAL A 101 CD1 LEU A 229 2.11 REMARK 500 O SER A 102 CB LEU A 229 2.12 REMARK 500 OD1 ASP A 227 N LEU A 229 2.12 REMARK 500 CG LYS A 37 C LEU A 181 2.15 REMARK 500 CD1 LEU A 161 CB ILE A 255 2.15 REMARK 500 CG2 THR A 199 CG ARG A 210 2.17 REMARK 500 CB LYS A 37 CD PRO A 182 2.19 REMARK 500 C VAL A 101 CD1 LEU A 229 2.19 REMARK 500 O ALA A 232 CG PRO A 236 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 35 CD PRO A 35 N 0.078 REMARK 500 GLU A 41 C TRP A 42 N -0.077 REMARK 500 LEU A 51 C LYS A 52 N 0.075 REMARK 500 GLU A 122 C ALA A 123 N 0.117 REMARK 500 HIS A 127 CG HIS A 127 CD2 0.102 REMARK 500 PRO A 148 CD PRO A 148 N 0.080 REMARK 500 PRO A 166 CD PRO A 166 N 0.068 REMARK 500 LEU A 172 C PHE A 173 N -0.078 REMARK 500 THR A 179 C ARG A 180 N 0.081 REMARK 500 HIS A 186 CG HIS A 186 CD2 0.102 REMARK 500 PRO A 197 CD PRO A 197 N 0.132 REMARK 500 PRO A 203 CD PRO A 203 N 0.075 REMARK 500 ARG A 210 C SER A 211 N 0.104 REMARK 500 HIS A 219 CG HIS A 219 CD2 0.102 REMARK 500 HIS A 254 CG HIS A 254 CD2 0.101 REMARK 500 HIS A 254 C ILE A 255 N 0.095 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 O - C - N ANGL. DEV. =-47.0 DEGREES REMARK 500 THR A 106 O - C - N ANGL. DEV. =-20.4 DEGREES REMARK 500 ALA A 144 O - C - N ANGL. DEV. =-31.2 DEGREES REMARK 500 PRO A 166 O - C - N ANGL. DEV. =-36.5 DEGREES REMARK 500 PRO A 167 C - N - CD ANGL. DEV. =-22.8 DEGREES REMARK 500 ASP A 170 N - CA - C ANGL. DEV. =-14.0 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 129 -146.87 129.43 REMARK 500 LEU A 162 162.09 111.98 REMARK 500 THR A 199 168.97 73.24
DBREF 2J2H A 12 68 PDB 2J2H 2J2H 12 68 DBREF 2J2H A 69 255 UNP Q5D4Z0 Q5D4Z0_9PSED 1 187
SEQRES 1 A 240 ARG LYS ARG GLY LEU ALA ARG PHE CYS LEU ARG SER GLN SEQRES 2 A 240 GLN GLN THR PHE ILE THR SER TRP ARG ASN PRO THR LYS SEQRES 3 A 240 ALA GLN ARG GLU TRP GLY LEU SER THR TYR ILE ASP ALA SEQRES 4 A 240 LEU LYS GLU ALA VAL ASP ALA VAL LEU ALA ILE THR GLY SEQRES 5 A 240 SER LYS ASP LEU ASN MET LEU GLY ALA CYS SER GLY GLY SEQRES 6 A 240 ILE THR CYS THR ALA LEU VAL GLY ILE GLY GLU ASN LYS SEQRES 7 A 240 VAL ASN ALA LEU THR LEU LEU VAL SER VAL LEU ASP THR SEQRES 8 A 240 THR MET ASP ASN GLN VAL ALA LEU PHE VAL ASP GLU GLN SEQRES 9 A 240 THR LEU GLU ALA ALA LYS ARG HIS SER TYR GLN ALA GLY SEQRES 10 A 240 VAL LEU GLU GLY SER GLU MET ALA LYS VAL PHE ALA TRP SEQRES 11 A 240 MET ARG PRO ASN ASP LEU ILE TRP ASN TYR TRP VAL ASN SEQRES 12 A 240 ASN TYR LEU LEU GLY ASN GLU PRO PRO VAL PHE ASP ILE SEQRES 13 A 240 LEU PHE TRP ASN ASN ASP THR THR ARG LEU PRO ALA ALA SEQRES 14 A 240 PHE HIS GLY ASP LEU ILE GLU MET PHE LYS THR ASN PRO SEQRES 15 A 240 LEU THR ARG PRO THR PRO TRP LYS CYS ALA ALA PRO ARG SEQRES 16 A 240 SER THR GLU THR GLY GLN MET ARG HIS LEU ARG LEU ALA SEQRES 17 A 240 GLY THR ASN ASP PRO LEU PRO MET ALA VAL MET LEU PRO SEQRES 18 A 240 LEU GLY THR SER VAL GLY GLY LYS ILE GLU PHE VAL LEU SEQRES 19 A 240 SER ASN SER GLY HIS ILE
HELIX 1 1 GLY A 15 SER A 23 1 9 HELIX 2 2 PRO A 35 GLN A 39 5 5 HELIX 3 3 THR A 46 GLY A 63 1 18 HELIX 4 4 CYS A 73 GLY A 90 1 14 HELIX 5 5 ALA A 113 ASP A 117 5 5 HELIX 6 6 ALA A 123 SER A 128 1 6 HELIX 7 7 SER A 137 TRP A 145 1 9 HELIX 8 8 TRP A 145 LEU A 162 1 18 HELIX 9 9 ASP A 170 ASN A 175 1 6 HELIX 10 10 ALA A 183 ASN A 196 1 14 HELIX 11 11 SER A 211 GLY A 215 5 5 HELIX 12 12 PRO A 230 THR A 239 1 10
SHEET 1 AA 4 LEU A 67 GLY A 71 0 SHEET 2 AA 4 VAL A 94 LEU A 99 1 N ASN A 95 O LEU A 67 SHEET 3 AA 4 HIS A 219 GLY A 224 1 O LEU A 220 N LEU A 99 SHEET 4 AA 4 LYS A 244 SER A 250 1 N ILE A 245 O HIS A 219 SHEET 1 AB 2 GLY A 132 VAL A 133 0 SHEET 2 AB 2 LEU A 181 PRO A 182 -1 O LEU A 181 N VAL A 133
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000