2J2D - Header Asymmetric Unit

HEADER HOMOLOGY MODELING 16-AUG-06 2J2D

TITLE THEORETICAL MODEL OF CYTOLYTIC PROTEIN-1 OF BACILLUS TITLE 2 THURINGIENSIS LDC-9

COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOLYTIC INSECTICIDAL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CYTOLYTIC DOMAIN, RESIDUES 9-131; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: MADURAI COLLECTION OF MICROORGANSIMS

KEYWDS HOMOLOGY MODELING, CYTOLYTIC PROTEIN, HEMOLYTIC, B. KEYWDS 2 THURINGIENSIS LDC-9

EXPDTA THEORETICAL MODEL

AUTHOR A.MAHALAKSHMI,K.SUJATHA,R.SHENBAGARATHAI

REVDAT 1 17-AUG-06 2J2D 0

JRNL AUTH A.MAHALAKSHMI,K.SUJATHA,R.SHENBAGARATHAI JRNL TITL THEORETICAL MODEL OF CYTOLYTIC PROTEIN-1 OF JRNL TITL 2 BACILLUS THURINGIENSIS LDC-9 JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2J2D COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 16-AUG-2006. REMARK 100 THE EBI ID CODE IS EBI-29721.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS STRUCTURE WAS BUILT USING THE STRUCTURE OF CYTB- REMARK 220 ENDOTOXIN LIKE FAMILY

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 O VAL A 29 N LEU A 39 1.97 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 30 CD PRO A 30 N 0.146 REMARK 500 LEU A 39 C ARG A 40 N 0.089 REMARK 500 PRO A 44 CD PRO A 44 N 0.102 REMARK 500 PRO A 55 CD PRO A 55 N 0.095 REMARK 500 MET A 56 C GLY A 57 N 0.073 REMARK 500 GLY A 95 C SER A 96 N 0.083 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 52 O - C - N ANGL. DEV. =-13.6 DEGREES REMARK 500 GLY A 90 O - C - N ANGL. DEV. =-32.5 DEGREES

DBREF 2J2D A 9 131 UNP Q38PK3 Q38PK3_BACTU 9 131

SEQRES 1 A 123 ILE ILE SER ASN TYR ILE LEU GLN ALA ILE MET LEU ALA SEQRES 2 A 123 ASN ALA PHE GLN ASN ALA LEU VAL PRO THR SER THR ASP SEQRES 3 A 123 PHE GLY ASP ALA LEU ARG PHE SER MET PRO LYS GLY LEU SEQRES 4 A 123 GLU ILE ALA ASN THR ILE THR PRO MET GLY ALA VAL VAL SEQRES 5 A 123 SER TYR VAL ASP GLN ASN VAL THR GLN THR ASN ASN GLN SEQRES 6 A 123 VAL SER VAL MET ILE ASN LYS VAL LEU GLU VAL LEU LYS SEQRES 7 A 123 THR VAL LEU GLY VAL ALA LEU SER GLY SER VAL ILE ASP SEQRES 8 A 123 GLN LEU THR ALA ALA VAL THR ASN THR PHE THR ASN LEU SEQRES 9 A 123 ASN THR GLN LYS ASN GLU ALA TRP ILE CYS TRP GLY LYS SEQRES 10 A 123 GLU THR ALA ASN GLN THR

HELIX 1 1 ILE A 10 ASN A 12 5 3 HELIX 2 2 TYR A 13 PHE A 24 1 12 HELIX 3 3 GLN A 25 ALA A 27 5 3 HELIX 4 4 SER A 42 ASN A 51 1 10 HELIX 5 5 GLN A 73 GLY A 90 1 18 HELIX 6 6 SER A 94 THR A 108 1 15 HELIX 7 7 ASN A 111 LYS A 116 5 6

CISPEP 1 ILE A 53 THR A 54 0 -0.11

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000