10 20 30 40 50 60 70 80 2IMK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 02-OCT-06 2IMK
TITLE STRUCTURES OF AN INSECT EPSILON-CLASS GLUTATHIONE S- TITLE 2 TRANSFERASE FROM THE MALARIA VECTOR ANOPHELES GAMBIAE: TITLE 3 EVIDENCE FOR HIGH DDT-DETOXIFYING ACTIVITY
COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPSILON-CLASS GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTATHIONE S-TRANSFERASE E2; COMPND 5 EC: 2.5.1.18; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANOPHELES GAMBIAE; SOURCE 3 ORGANISM_COMMON: AFRICAN MALARIA MOSQUITO; SOURCE 4 ORGANISM_TAXID: 7165; SOURCE 5 GENE: AF316636; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-SUMO
KEYWDS EPSILON-CLASS GLUTATHIONE; S-TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.WANG,J.HEMINGWAY,H.RANSON,E.J.MEEHAN,L.CHEN
REVDAT 2 09-DEC-08 2IMK 1 JRNL VERSN REVDAT 1 09-OCT-07 2IMK 0
JRNL AUTH Y.WANG,L.QIU,H.RANSON,N.LUMJUAN,J.HEMINGWAY, JRNL AUTH 2 W.N.SETZER,E.J.MEEHAN,L.CHEN JRNL TITL STRUCTURE OF AN INSECT EPSILON CLASS GLUTATHIONE JRNL TITL 2 S-TRANSFERASE FROM THE MALARIA VECTOR ANOPHELES JRNL TITL 3 GAMBIAE PROVIDES AN EXPLANATION FOR THE HIGH JRNL TITL 4 DDT-DETOXIFYING ACTIVITY JRNL REF J.STRUCT.BIOL. V. 164 228 2008 JRNL REFN ISSN 1047-8477 JRNL PMID 18778777 JRNL DOI 10.1016/J.JSB.2008.08.003
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 28750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1476 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1183 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 53.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3478 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.06000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 2.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.214 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.873 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3604 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4878 ; 1.944 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 437 ; 7.081 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;37.662 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;17.240 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.596 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 555 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2680 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1685 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2427 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 192 ; 0.199 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2261 ; 1.151 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3559 ; 1.848 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1517 ; 3.152 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1319 ; 4.689 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2IMK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-06. REMARK 100 THE RCSB ID CODE IS RCSB039754.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29122 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : 0.15300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : 0.01400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID: 2IL3 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM IODIDE AND 20% W/V REMARK 280 POLYETHYLENE GLYCEROL 3350 IN FINAL PH 6.9, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.75600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.74050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.75600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.74050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 318 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 324 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 341 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS B 220 REMARK 465 ALA B 221
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 305 O HOH B 357 1.74 REMARK 500 OE1 GLU B 176 OG SER B 178 1.93 REMARK 500 O HOH B 303 O HOH B 356 2.03 REMARK 500 CG2 THR B 154 O HOH B 344 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 198 CG GLU A 198 CD 0.091 REMARK 500 ASP B 83 CB ASP B 83 CG 0.197 REMARK 500 GLU B 128 CG GLU B 128 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 40 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 53 46.60 39.87 REMARK 500 GLU A 67 117.37 92.06 REMARK 500 ASN A 200 -50.90 -143.85 REMARK 500 GLU B 67 119.12 82.31 REMARK 500 VAL B 106 -61.15 -122.07 REMARK 500 ASN B 200 -51.70 -148.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 7 THR B 8 -148.53 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTX B 301 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTX A 302
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IL3 RELATED DB: PDB REMARK 900 RELATED ID: 2IMI RELATED DB: PDB
REMARK 999 REMARK 999 SEQUENCE REMARK 999 REMARK 999 TWO CLOSEST MATCHES IN SEQUENCE DATABASES, REMARK 999 UNP Q7PVS6_ANOGA AND GB EAA43411 HAVE CONFLICTS REMARK 999 WITH SEQUENCE AS SEEN IN THE ELECTRON DENSITY REMARK 999 MAPS: REMARK 999 REMARK 999 Q7PVS6_ANOGA HAS ADDITIONAL N-TERMINAL LYSINE REMARK 999 REMARK 999 EAA43411 HAS ADDITIONAL C-TERMINAL LYSINE AND ALANINE REMARK 999 (REPORTED HERE AS INSERTIONS)
DBREF 2IMK A 1 219 UNP Q7PVS6 Q7PVS6_ANOGA 2 220 DBREF 2IMK B 1 219 UNP Q7PVS6 Q7PVS6_ANOGA 2 220
SEQADV 2IMK LYS A 220 UNP Q7PVS6 INSERTION SEQADV 2IMK ALA A 221 UNP Q7PVS6 INSERTION SEQADV 2IMK LYS B 220 UNP Q7PVS6 INSERTION SEQADV 2IMK ALA B 221 UNP Q7PVS6 INSERTION
SEQRES 1 A 221 MET SER ASN LEU VAL LEU TYR THR LEU HIS LEU SER PRO SEQRES 2 A 221 PRO CYS ARG ALA VAL GLU LEU THR ALA LYS ALA LEU GLY SEQRES 3 A 221 LEU GLU LEU GLU GLN LYS THR ILE ASN LEU LEU THR GLY SEQRES 4 A 221 ASP HIS LEU LYS PRO GLU PHE VAL LYS LEU ASN PRO GLN SEQRES 5 A 221 HIS THR ILE PRO VAL LEU ASP ASP ASN GLY THR ILE ILE SEQRES 6 A 221 THR GLU SER HIS ALA ILE MET ILE TYR LEU VAL THR LYS SEQRES 7 A 221 TYR GLY LYS ASP ASP SER LEU TYR PRO LYS ASP PRO VAL SEQRES 8 A 221 LYS GLN ALA ARG VAL ASN SER ALA LEU HIS PHE GLU SER SEQRES 9 A 221 GLY VAL LEU PHE ALA ARG MET ARG PHE ILE PHE GLU ARG SEQRES 10 A 221 ILE LEU PHE PHE GLY LYS SER ASP ILE PRO GLU ASP ARG SEQRES 11 A 221 VAL GLU TYR VAL GLN LYS SER TYR GLU LEU LEU GLU ASP SEQRES 12 A 221 THR LEU VAL ASP ASP PHE VAL ALA GLY PRO THR MET THR SEQRES 13 A 221 ILE ALA ASP PHE SER CYS ILE SER THR ILE SER SER ILE SEQRES 14 A 221 MET GLY VAL VAL PRO LEU GLU GLN SER LYS HIS PRO ARG SEQRES 15 A 221 ILE TYR ALA TRP ILE ASP ARG LEU LYS GLN LEU PRO TYR SEQRES 16 A 221 TYR GLU GLU ALA ASN GLY GLY GLY GLY THR ASP LEU GLY SEQRES 17 A 221 LYS PHE VAL LEU ALA LYS LYS GLU GLU ASN ALA LYS ALA SEQRES 1 B 221 MET SER ASN LEU VAL LEU TYR THR LEU HIS LEU SER PRO SEQRES 2 B 221 PRO CYS ARG ALA VAL GLU LEU THR ALA LYS ALA LEU GLY SEQRES 3 B 221 LEU GLU LEU GLU GLN LYS THR ILE ASN LEU LEU THR GLY SEQRES 4 B 221 ASP HIS LEU LYS PRO GLU PHE VAL LYS LEU ASN PRO GLN SEQRES 5 B 221 HIS THR ILE PRO VAL LEU ASP ASP ASN GLY THR ILE ILE SEQRES 6 B 221 THR GLU SER HIS ALA ILE MET ILE TYR LEU VAL THR LYS SEQRES 7 B 221 TYR GLY LYS ASP ASP SER LEU TYR PRO LYS ASP PRO VAL SEQRES 8 B 221 LYS GLN ALA ARG VAL ASN SER ALA LEU HIS PHE GLU SER SEQRES 9 B 221 GLY VAL LEU PHE ALA ARG MET ARG PHE ILE PHE GLU ARG SEQRES 10 B 221 ILE LEU PHE PHE GLY LYS SER ASP ILE PRO GLU ASP ARG SEQRES 11 B 221 VAL GLU TYR VAL GLN LYS SER TYR GLU LEU LEU GLU ASP SEQRES 12 B 221 THR LEU VAL ASP ASP PHE VAL ALA GLY PRO THR MET THR SEQRES 13 B 221 ILE ALA ASP PHE SER CYS ILE SER THR ILE SER SER ILE SEQRES 14 B 221 MET GLY VAL VAL PRO LEU GLU GLN SER LYS HIS PRO ARG SEQRES 15 B 221 ILE TYR ALA TRP ILE ASP ARG LEU LYS GLN LEU PRO TYR SEQRES 16 B 221 TYR GLU GLU ALA ASN GLY GLY GLY GLY THR ASP LEU GLY SEQRES 17 B 221 LYS PHE VAL LEU ALA LYS LYS GLU GLU ASN ALA LYS ALA
HET GTX B 301 26 HET GTX A 302 26
HETNAM GTX S-HEXYLGLUTATHIONE
FORMUL 3 GTX 2(C16 H30 N3 O6 S 1+) FORMUL 5 HOH *166(H2 O)
HELIX 1 1 SER A 12 GLY A 26 1 15 HELIX 2 2 ASN A 35 LEU A 42 5 8 HELIX 3 3 LYS A 43 ASN A 50 1 8 HELIX 4 4 GLU A 67 GLY A 80 1 14 HELIX 5 5 ASP A 89 VAL A 106 1 18 HELIX 6 6 VAL A 106 GLY A 122 1 17 HELIX 7 7 PRO A 127 LEU A 145 1 19 HELIX 8 8 THR A 156 MET A 170 1 15 HELIX 9 9 HIS A 180 LYS A 191 1 12 HELIX 10 10 TYR A 195 ASN A 200 1 6 HELIX 11 11 ASN A 200 ALA A 219 1 20 HELIX 12 12 SER B 12 LEU B 25 1 14 HELIX 13 13 ASN B 35 LEU B 42 5 8 HELIX 14 14 LYS B 43 ASN B 50 1 8 HELIX 15 15 GLU B 67 GLY B 80 1 14 HELIX 16 16 ASP B 89 VAL B 106 1 18 HELIX 17 17 VAL B 106 PHE B 120 1 15 HELIX 18 18 PRO B 127 LEU B 145 1 19 HELIX 19 19 THR B 156 MET B 170 1 15 HELIX 20 20 HIS B 180 GLN B 192 1 13 HELIX 21 21 TYR B 195 ASN B 200 1 6 HELIX 22 22 ASN B 200 ALA B 219 1 20
SHEET 1 A 4 LEU A 29 THR A 33 0 SHEET 2 A 4 LEU A 4 THR A 8 1 N LEU A 4 O GLU A 30 SHEET 3 A 4 VAL A 57 ASP A 60 -1 O VAL A 57 N TYR A 7 SHEET 4 A 4 THR A 63 THR A 66 -1 O THR A 63 N ASP A 60 SHEET 1 B 4 LEU B 29 THR B 33 0 SHEET 2 B 4 LEU B 4 THR B 8 1 N LEU B 6 O GLU B 30 SHEET 3 B 4 VAL B 57 ASP B 60 -1 O ASP B 59 N VAL B 5 SHEET 4 B 4 THR B 63 THR B 66 -1 O ILE B 65 N LEU B 58
CISPEP 1 ILE A 55 PRO A 56 0 8.35 CISPEP 2 ILE B 55 PRO B 56 0 -1.00
SITE 1 AC1 17 LEU B 11 SER B 12 PRO B 14 LEU B 36 SITE 2 AC1 17 HIS B 41 HIS B 53 THR B 54 ILE B 55 SITE 3 AC1 17 PRO B 56 GLU B 67 SER B 68 ARG B 112 SITE 4 AC1 17 LEU B 207 HOH B 306 HOH B 312 HOH B 318 SITE 5 AC1 17 HOH B 364 SITE 1 AC2 15 SER A 12 PRO A 14 LEU A 36 HIS A 41 SITE 2 AC2 15 HIS A 53 THR A 54 ILE A 55 PRO A 56 SITE 3 AC2 15 GLU A 67 SER A 68 PHE A 108 ARG A 112 SITE 4 AC2 15 LEU A 119 HOH A 308 HOH A 354
CRYST1 49.512 85.481 93.265 90.00 90.00 90.00 P 21 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.020197 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011699 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010722 0.00000