10 20 30 40 50 60 70 80 2IEH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 19-SEP-06 2IEH
TITLE CRYSTAL STRUCTURE OF HUMAN KINESIN EG5 IN COMPLEX WITH (R)- TITLE 2 MON97, A NEW MONASTROL-BASED INHIBITOR THAT BINDS AS (R)- TITLE 3 ENANTIOMER
COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN-LIKE PROTEIN KIF11; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MOTOR DOMAIN OF HUMAN KINESIN EG5; COMPND 5 SYNONYM: KINESIN-RELATED MOTOR PROTEIN EG5, KINESIN-LIKE COMPND 6 SPINDLE PROTEIN HKSP, THYROID RECEPTOR-INTERACTING PROTEIN COMPND 7 5, TRIP5, KINESIN-LIKE PROTEIN 1; COMPND 8 EC: 3.6.4.4; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIF11, EG5, KNSL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A
KEYWDS BETA-SHEET CORE, FLANKED BY THREE ALPHA-HELICES ON EACH KEYWDS 2 SIDE, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR I.GARCIA-SAEZ,F.KOZIELSKI
REVDAT 2 13-MAY-08 2IEH 1 JRNL VERSN REVDAT 1 23-JAN-07 2IEH 0
JRNL AUTH I.GARCIA-SAEZ,S.DEBONIS,R.LOPEZ,F.TRUCCO, JRNL AUTH 2 B.ROUSSEAU,P.THUERY,F.KOZIELSKI JRNL TITL STRUCTURE OF HUMAN EG5 IN COMPLEX WITH A NEW JRNL TITL 2 MONASTROL-BASED INHIBITOR BOUND IN THE R JRNL TITL 3 CONFIGURATION. JRNL REF J.BIOL.CHEM. V. 282 9740 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17251189 JRNL DOI 10.1074/JBC.M608883200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 46815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2362 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 394 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.48 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.80 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2IEH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-06. REMARK 100 THE RCSB ID CODE IS RCSB039482.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979645 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51576 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.19000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.79000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1Q0B REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20%PEG4000, 0.2M K2HPO4, 0.1M MES, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.68500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.93000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.93000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.68500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 PRO A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 LYS A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 ILE A 272 REMARK 465 GLY A 273 REMARK 465 ARG A 274 REMARK 465 SER A 275 REMARK 465 GLY A 276 REMARK 465 ALA A 277 REMARK 465 VAL A 278 REMARK 465 ASP A 279 REMARK 465 LYS A 280 REMARK 465 ARG A 281 REMARK 465 ALA A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 GLY A 286 REMARK 465 ASN A 287 REMARK 465 VAL A 365 REMARK 465 ASN A 366 REMARK 465 GLN A 367 REMARK 465 LYS A 368 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 PRO B 5 REMARK 465 ASN B 6 REMARK 465 SER B 7 REMARK 465 SER B 8 REMARK 465 ALA B 9 REMARK 465 LYS B 10 REMARK 465 LYS B 11 REMARK 465 LYS B 12 REMARK 465 GLU B 13 REMARK 465 GLU B 14 REMARK 465 LYS B 15 REMARK 465 ILE B 272 REMARK 465 GLY B 273 REMARK 465 ARG B 274 REMARK 465 SER B 275 REMARK 465 GLY B 276 REMARK 465 ALA B 277 REMARK 465 VAL B 278 REMARK 465 ASP B 279 REMARK 465 LYS B 280 REMARK 465 ARG B 281 REMARK 465 ALA B 282 REMARK 465 ARG B 283 REMARK 465 GLU B 284 REMARK 465 ALA B 285 REMARK 465 GLY B 286 REMARK 465 ASN B 287 REMARK 465 GLN B 367 REMARK 465 LYS B 368
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 183 O HOH A 717 1.84 REMARK 500 N LYS A 197 O HOH A 717 2.01 REMARK 500 O THR A 328 ND2 ASN A 361 2.02 REMARK 500 OE1 GLU A 162 O HOH A 714 2.04 REMARK 500 OD1 ASP A 177 OG SER A 179 2.05 REMARK 500 OG SER B 61 O HOH B 696 2.07 REMARK 500 NE ARG A 221 O HOH A 714 2.12 REMARK 500 OG1 THR A 107 OE2 GLU A 270 2.14 REMARK 500 OE1 GLU A 351 O HOH A 713 2.16 REMARK 500 CD ARG A 221 O HOH A 714 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 16 CA GLY A 16 C 0.101 REMARK 500 PHE A 102 CB PHE A 102 CG -0.139 REMARK 500 PHE A 102 CD1 PHE A 102 CE1 -0.121 REMARK 500 ARG A 189 CB ARG A 189 CG 0.163 REMARK 500 ARG A 189 CG ARG A 189 CD 0.180 REMARK 500 SER B 36 C SER B 36 O 0.148 REMARK 500 ALA B 37 CA ALA B 37 CB -0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 16 N - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 LYS A 15 CA - C - N ANGL. DEV. = -15.1 DEGREES REMARK 500 LEU A 182 CA - CB - CG ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG A 189 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 189 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 221 CG - CD - NE ANGL. DEV. = 23.2 DEGREES REMARK 500 ARG A 221 CD - NE - CZ ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 221 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 221 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 LEU A 227 CB - CG - CD1 ANGL. DEV. = -10.9 DEGREES REMARK 500 HIS B 38 C - N - CA ANGL. DEV. = 22.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 17 134.13 173.88 REMARK 500 PRO A 121 176.72 -53.67 REMARK 500 GLU A 123 42.72 37.56 REMARK 500 ASP A 149 -79.57 -51.21 REMARK 500 ASN A 150 -169.10 -61.87 REMARK 500 ASN A 165 53.67 39.61 REMARK 500 LEU A 171 38.48 -96.63 REMARK 500 LEU A 172 16.33 -154.70 REMARK 500 ARG A 189 -73.01 -69.50 REMARK 500 ASP A 208 28.90 -77.91 REMARK 500 PRO A 310 32.16 -64.10 REMARK 500 SER A 314 145.74 -170.55 REMARK 500 LYS A 362 77.58 -114.30 REMARK 500 ASN B 29 -144.26 -87.57 REMARK 500 GLU B 118 -169.99 -121.70 REMARK 500 ASP B 149 57.15 -155.35 REMARK 500 VAL B 178 3.80 -59.45 REMARK 500 ASN B 190 -159.24 -88.86 REMARK 500 PRO B 310 34.15 -64.14 REMARK 500 SER B 314 149.38 -174.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 125 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 36 -12.22 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 666 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A 696 DISTANCE = 5.30 ANGSTROMS
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 112 OG1 REMARK 620 2 HOH A 613 O 65.7 REMARK 620 3 HOH A 616 O 81.9 95.6 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 601 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 607 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 608 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 604 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 600 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOY A 602 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 606 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 603 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MOY B 605
DBREF 2IEH A 2 368 UNP P52732 KIF11_HUMAN 2 368 DBREF 2IEH B 2 368 UNP P52732 KIF11_HUMAN 2 368
SEQRES 1 A 367 ALA SER GLN PRO ASN SER SER ALA LYS LYS LYS GLU GLU SEQRES 2 A 367 LYS GLY LYS ASN ILE GLN VAL VAL VAL ARG CYS ARG PRO SEQRES 3 A 367 PHE ASN LEU ALA GLU ARG LYS ALA SER ALA HIS SER ILE SEQRES 4 A 367 VAL GLU CYS ASP PRO VAL ARG LYS GLU VAL SER VAL ARG SEQRES 5 A 367 THR GLY GLY LEU ALA ASP LYS SER SER ARG LYS THR TYR SEQRES 6 A 367 THR PHE ASP MET VAL PHE GLY ALA SER THR LYS GLN ILE SEQRES 7 A 367 ASP VAL TYR ARG SER VAL VAL CYS PRO ILE LEU ASP GLU SEQRES 8 A 367 VAL ILE MET GLY TYR ASN CYS THR ILE PHE ALA TYR GLY SEQRES 9 A 367 GLN THR GLY THR GLY LYS THR PHE THR MET GLU GLY GLU SEQRES 10 A 367 ARG SER PRO ASN GLU GLU TYR THR TRP GLU GLU ASP PRO SEQRES 11 A 367 LEU ALA GLY ILE ILE PRO ARG THR LEU HIS GLN ILE PHE SEQRES 12 A 367 GLU LYS LEU THR ASP ASN GLY THR GLU PHE SER VAL LYS SEQRES 13 A 367 VAL SER LEU LEU GLU ILE TYR ASN GLU GLU LEU PHE ASP SEQRES 14 A 367 LEU LEU ASN PRO SER SER ASP VAL SER GLU ARG LEU GLN SEQRES 15 A 367 MET PHE ASP ASP PRO ARG ASN LYS ARG GLY VAL ILE ILE SEQRES 16 A 367 LYS GLY LEU GLU GLU ILE THR VAL HIS ASN LYS ASP GLU SEQRES 17 A 367 VAL TYR GLN ILE LEU GLU LYS GLY ALA ALA LYS ARG THR SEQRES 18 A 367 THR ALA ALA THR LEU MET ASN ALA TYR SER SER ARG SER SEQRES 19 A 367 HIS SER VAL PHE SER VAL THR ILE HIS MET LYS GLU THR SEQRES 20 A 367 THR ILE ASP GLY GLU GLU LEU VAL LYS ILE GLY LYS LEU SEQRES 21 A 367 ASN LEU VAL ASP LEU ALA GLY SER GLU ASN ILE GLY ARG SEQRES 22 A 367 SER GLY ALA VAL ASP LYS ARG ALA ARG GLU ALA GLY ASN SEQRES 23 A 367 ILE ASN GLN SER LEU LEU THR LEU GLY ARG VAL ILE THR SEQRES 24 A 367 ALA LEU VAL GLU ARG THR PRO HIS VAL PRO TYR ARG GLU SEQRES 25 A 367 SER LYS LEU THR ARG ILE LEU GLN ASP SER LEU GLY GLY SEQRES 26 A 367 ARG THR ARG THR SER ILE ILE ALA THR ILE SER PRO ALA SEQRES 27 A 367 SER LEU ASN LEU GLU GLU THR LEU SER THR LEU GLU TYR SEQRES 28 A 367 ALA HIS ARG ALA LYS ASN ILE LEU ASN LYS PRO GLU VAL SEQRES 29 A 367 ASN GLN LYS SEQRES 1 B 367 ALA SER GLN PRO ASN SER SER ALA LYS LYS LYS GLU GLU SEQRES 2 B 367 LYS GLY LYS ASN ILE GLN VAL VAL VAL ARG CYS ARG PRO SEQRES 3 B 367 PHE ASN LEU ALA GLU ARG LYS ALA SER ALA HIS SER ILE SEQRES 4 B 367 VAL GLU CYS ASP PRO VAL ARG LYS GLU VAL SER VAL ARG SEQRES 5 B 367 THR GLY GLY LEU ALA ASP LYS SER SER ARG LYS THR TYR SEQRES 6 B 367 THR PHE ASP MET VAL PHE GLY ALA SER THR LYS GLN ILE SEQRES 7 B 367 ASP VAL TYR ARG SER VAL VAL CYS PRO ILE LEU ASP GLU SEQRES 8 B 367 VAL ILE MET GLY TYR ASN CYS THR ILE PHE ALA TYR GLY SEQRES 9 B 367 GLN THR GLY THR GLY LYS THR PHE THR MET GLU GLY GLU SEQRES 10 B 367 ARG SER PRO ASN GLU GLU TYR THR TRP GLU GLU ASP PRO SEQRES 11 B 367 LEU ALA GLY ILE ILE PRO ARG THR LEU HIS GLN ILE PHE SEQRES 12 B 367 GLU LYS LEU THR ASP ASN GLY THR GLU PHE SER VAL LYS SEQRES 13 B 367 VAL SER LEU LEU GLU ILE TYR ASN GLU GLU LEU PHE ASP SEQRES 14 B 367 LEU LEU ASN PRO SER SER ASP VAL SER GLU ARG LEU GLN SEQRES 15 B 367 MET PHE ASP ASP PRO ARG ASN LYS ARG GLY VAL ILE ILE SEQRES 16 B 367 LYS GLY LEU GLU GLU ILE THR VAL HIS ASN LYS ASP GLU SEQRES 17 B 367 VAL TYR GLN ILE LEU GLU LYS GLY ALA ALA LYS ARG THR SEQRES 18 B 367 THR ALA ALA THR LEU MET ASN ALA TYR SER SER ARG SER SEQRES 19 B 367 HIS SER VAL PHE SER VAL THR ILE HIS MET LYS GLU THR SEQRES 20 B 367 THR ILE ASP GLY GLU GLU LEU VAL LYS ILE GLY LYS LEU SEQRES 21 B 367 ASN LEU VAL ASP LEU ALA GLY SER GLU ASN ILE GLY ARG SEQRES 22 B 367 SER GLY ALA VAL ASP LYS ARG ALA ARG GLU ALA GLY ASN SEQRES 23 B 367 ILE ASN GLN SER LEU LEU THR LEU GLY ARG VAL ILE THR SEQRES 24 B 367 ALA LEU VAL GLU ARG THR PRO HIS VAL PRO TYR ARG GLU SEQRES 25 B 367 SER LYS LEU THR ARG ILE LEU GLN ASP SER LEU GLY GLY SEQRES 26 B 367 ARG THR ARG THR SER ILE ILE ALA THR ILE SER PRO ALA SEQRES 27 B 367 SER LEU ASN LEU GLU GLU THR LEU SER THR LEU GLU TYR SEQRES 28 B 367 ALA HIS ARG ALA LYS ASN ILE LEU ASN LYS PRO GLU VAL SEQRES 29 B 367 ASN GLN LYS
HET MG A 601 1 HET K A 607 1 HET CL A 608 1 HET MG B 604 1 HET ADP A 600 27 HET MOY A 602 24 HET PG4 A 606 13 HET ADP B 603 27 HET MOY B 605 24
HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MOY [(4R)-4-(3-HYDROXYPHENYL)-1,6-DIMETHYL-2-THIOXO-1,2,3, HETNAM 2 MOY 4-TETRAHYDROPYRIMIDIN-5-YL](PHENYL)METHANONE HETNAM PG4 TETRAETHYLENE GLYCOL
FORMUL 3 MG 2(MG 2+) FORMUL 4 K K 1+ FORMUL 5 CL CL 1- FORMUL 7 ADP 2(C10 H15 N5 O10 P2) FORMUL 8 MOY 2(C19 H18 N2 O2 S) FORMUL 9 PG4 C8 H18 O5 FORMUL 12 HOH *214(H2 O)
HELIX 1 1 LYS A 77 VAL A 85 1 9 HELIX 2 2 VAL A 85 MET A 95 1 11 HELIX 3 3 GLY A 110 GLU A 116 1 7 HELIX 4 4 GLY A 134 THR A 148 1 15 HELIX 5 5 ASN A 206 ASP A 208 5 3 HELIX 6 6 GLU A 209 THR A 223 1 15 HELIX 7 7 ALA A 230 SER A 235 1 6 HELIX 8 8 ASN A 289 GLU A 304 1 16 HELIX 9 9 PRO A 310 GLU A 313 5 4 HELIX 10 10 SER A 314 LEU A 320 1 7 HELIX 11 11 GLN A 321 LEU A 324 5 4 HELIX 12 12 ALA A 339 LEU A 341 5 3 HELIX 13 13 ASN A 342 LYS A 357 1 16 HELIX 14 14 ASN B 29 LYS B 34 1 6 HELIX 15 15 LYS B 77 VAL B 85 1 9 HELIX 16 16 VAL B 85 MET B 95 1 11 HELIX 17 17 GLY B 110 GLU B 116 1 7 HELIX 18 18 GLY B 134 LEU B 147 1 14 HELIX 19 19 ASN B 206 ASP B 208 5 3 HELIX 20 20 GLU B 209 MET B 228 1 20 HELIX 21 21 ALA B 230 SER B 235 1 6 HELIX 22 22 ASN B 289 GLU B 304 1 16 HELIX 23 23 PRO B 310 GLU B 313 5 4 HELIX 24 24 SER B 314 LEU B 320 1 7 HELIX 25 25 GLN B 321 LEU B 324 5 4 HELIX 26 26 ALA B 339 LEU B 341 5 3 HELIX 27 27 ASN B 342 LYS B 357 1 16
SHEET 1 A 2 LYS A 17 ASN A 18 0 SHEET 2 A 2 LEU A 360 ASN A 361 -1 O ASN A 361 N LYS A 17 SHEET 1 B 8 MET A 70 PHE A 72 0 SHEET 2 B 8 GLN A 20 CYS A 25 1 N VAL A 23 O PHE A 72 SHEET 3 B 8 ARG A 329 ILE A 336 1 O ALA A 334 N VAL A 22 SHEET 4 B 8 ASN A 98 TYR A 104 1 N ASN A 98 O ARG A 329 SHEET 5 B 8 LEU A 255 ASP A 265 1 O VAL A 264 N ILE A 101 SHEET 6 B 8 HIS A 236 GLU A 247 -1 N ILE A 243 O GLY A 259 SHEET 7 B 8 THR A 152 TYR A 164 -1 N LEU A 161 O VAL A 238 SHEET 8 B 8 GLU A 167 ASP A 170 -1 O PHE A 169 N GLU A 162 SHEET 1 C 8 MET A 70 PHE A 72 0 SHEET 2 C 8 GLN A 20 CYS A 25 1 N VAL A 23 O PHE A 72 SHEET 3 C 8 ARG A 329 ILE A 336 1 O ALA A 334 N VAL A 22 SHEET 4 C 8 ASN A 98 TYR A 104 1 N ASN A 98 O ARG A 329 SHEET 5 C 8 LEU A 255 ASP A 265 1 O VAL A 264 N ILE A 101 SHEET 6 C 8 HIS A 236 GLU A 247 -1 N ILE A 243 O GLY A 259 SHEET 7 C 8 THR A 152 TYR A 164 -1 N LEU A 161 O VAL A 238 SHEET 8 C 8 ILE A 202 VAL A 204 -1 O VAL A 204 N VAL A 156 SHEET 1 D 3 VAL A 41 ASP A 44 0 SHEET 2 D 3 GLU A 49 GLY A 56 -1 O SER A 51 N GLU A 42 SHEET 3 D 3 SER A 61 THR A 67 -1 O LYS A 64 N VAL A 52 SHEET 1 E 2 GLN A 183 ASP A 186 0 SHEET 2 E 2 VAL A 194 LYS A 197 -1 O ILE A 195 N PHE A 185 SHEET 1 F 2 LYS B 17 ASN B 18 0 SHEET 2 F 2 LEU B 360 ASN B 361 -1 O ASN B 361 N LYS B 17 SHEET 1 G 8 MET B 70 PHE B 72 0 SHEET 2 G 8 GLN B 20 CYS B 25 1 N VAL B 23 O PHE B 72 SHEET 3 G 8 ARG B 329 ILE B 336 1 O ALA B 334 N VAL B 22 SHEET 4 G 8 ASN B 98 TYR B 104 1 N PHE B 102 O ILE B 333 SHEET 5 G 8 GLU B 254 ASP B 265 1 O LYS B 260 N CYS B 99 SHEET 6 G 8 HIS B 236 THR B 248 -1 N ILE B 243 O GLY B 259 SHEET 7 G 8 GLU B 153 TYR B 164 -1 N GLU B 153 O LYS B 246 SHEET 8 G 8 GLU B 167 ASP B 170 -1 O PHE B 169 N GLU B 162 SHEET 1 H 8 MET B 70 PHE B 72 0 SHEET 2 H 8 GLN B 20 CYS B 25 1 N VAL B 23 O PHE B 72 SHEET 3 H 8 ARG B 329 ILE B 336 1 O ALA B 334 N VAL B 22 SHEET 4 H 8 ASN B 98 TYR B 104 1 N PHE B 102 O ILE B 333 SHEET 5 H 8 GLU B 254 ASP B 265 1 O LYS B 260 N CYS B 99 SHEET 6 H 8 HIS B 236 THR B 248 -1 N ILE B 243 O GLY B 259 SHEET 7 H 8 GLU B 153 TYR B 164 -1 N GLU B 153 O LYS B 246 SHEET 8 H 8 ILE B 202 VAL B 204 -1 O VAL B 204 N VAL B 156 SHEET 1 I 3 VAL B 41 ASP B 44 0 SHEET 2 I 3 GLU B 49 GLY B 56 -1 O GLU B 49 N ASP B 44 SHEET 3 I 3 SER B 61 THR B 67 -1 O LYS B 64 N VAL B 52 SHEET 1 J 2 GLN B 183 ASP B 186 0 SHEET 2 J 2 VAL B 194 LYS B 197 -1 O ILE B 195 N PHE B 185
LINK OG1 THR A 112 MG MG A 601 1555 1555 2.38 LINK OG1 THR B 112 MG MG B 604 1555 1555 2.41 LINK MG MG A 601 O HOH A 613 1555 1555 2.36 LINK MG MG A 601 O HOH A 616 1555 1555 2.46
SITE 1 AC1 5 THR A 112 ADP A 600 HOH A 612 HOH A 613 SITE 2 AC1 5 HOH A 616 SITE 1 AC2 6 ARG A 24 CYS A 25 GLY A 73 ALA A 74 SITE 2 AC2 6 THR A 76 ADP A 600 SITE 1 AC3 2 ARG A 138 PG4 A 606 SITE 1 AC4 5 THR B 112 ADP B 603 HOH B 609 HOH B 610 SITE 2 AC4 5 HOH B 612 SITE 1 AC5 18 ARG A 24 ARG A 26 PRO A 27 GLN A 106 SITE 2 AC5 18 THR A 107 GLY A 108 THR A 109 GLY A 110 SITE 3 AC5 18 LYS A 111 THR A 112 PHE A 113 GLU A 118 SITE 4 AC5 18 MG A 601 PG4 A 606 K A 607 HOH A 612 SITE 5 AC5 18 HOH A 613 HOH A 621 SITE 1 AC6 12 GLU A 116 GLY A 117 GLU A 118 ARG A 119 SITE 2 AC6 12 TRP A 127 ASP A 130 ALA A 133 PRO A 137 SITE 3 AC6 12 LEU A 160 TYR A 211 GLU A 215 ARG A 221 SITE 1 AC7 11 ARG A 24 PRO A 27 ALA A 74 THR A 76 SITE 2 AC7 11 LYS A 77 GLN A 78 ILE A 79 PRO A 131 SITE 3 AC7 11 ARG A 138 ADP A 600 CL A 608 SITE 1 AC8 17 ARG B 24 ARG B 26 PRO B 27 GLN B 106 SITE 2 AC8 17 THR B 107 GLY B 108 THR B 109 GLY B 110 SITE 3 AC8 17 LYS B 111 THR B 112 PHE B 113 GLU B 118 SITE 4 AC8 17 MG B 604 HOH B 610 HOH B 619 HOH B 625 SITE 5 AC8 17 HOH B 702 SITE 1 AC9 10 GLU B 116 GLY B 117 GLU B 118 ARG B 119 SITE 2 AC9 10 ASP B 130 ALA B 133 PRO B 137 TYR B 211 SITE 3 AC9 10 LEU B 214 ARG B 221
CRYST1 69.370 79.900 159.860 90.00 90.00 90.00 P 21 21 21 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014415 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012516 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006255 0.00000