2IB4 - Header Asymmetric Unit

HEADER DUMMY FOR WHATIF 09-SEP-06 2IB4

TITLE 3D STRUCTURE OF D-AMINO ACID OXIDASE [NECTRIA HAEMATOCOCCA]

COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO ACID OXIDASE [NECTRIA HAEMATOCOCCA]; COMPND 3 CHAIN: NULL; COMPND 4 FRAGMENT: D-AMINO ACID OXIDASE [NECTRIA HAEMATOCOCCA]; COMPND 5 EC: 1.4.3.3.; COMPND 6 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: [NECTRIA HAEMATOCOCCA]; SOURCE 3 STRAIN: [NECTRIA HAEMATOCOCCA]; SOURCE 4 OTHER_DETAILS: NECTRIA HAEMATOCOCCA [ NECTRIA SOURCE 5 HAEMATOCOCCA EUKARYOTA; FUNGI; ASCOMYCOTA; SOURCE 6 PEZIZOMYCOTINA; SORDARIOMYCETES; SOURCE 7 HYPOCREOMYCETIDAE; HYPOCREALES; NECTRIACEAE; NECTRIA].

KEYWDS FAD, FLAVOPROTEIN, OXIDOREDUCTASE, PEROXISOME

EXPDTA THEORETICAL MODEL

AUTHOR P.BHATTACHARYA

REVDAT 1 26-SEP-06 2IB4 0

JRNL AUTH P.BHATTACHARYA,SCHOOL OF LIFE SCIENCES, JRNL AUTH 2 JAWAHARLAL NEHRU UNIVERSITY,NEW DELHI-110067,INDIA, JRNL AUTH 3 TEL:91-011-2670-4523,FAX:91-011-2618-7338 JRNL TITL 3D STRUCTURE OF D-AMINO ACID OXIDASE [NECTRIA JRNL TITL 2 HAEMATOCOCCA] JRNL REF JOURNAL(NOT DECIDED YET) V. 0 0 2006

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE COMPARATIVE 3D MODEL WAS BUILT REMARK 3 USING SWISS-MODELLER(AUTOMODE) AND TEMPLATE PDB ID 1C0PA. THE REMARK 3 OTHER PROGRAMS FOR VERIFICATION WERE WHAT IF, PROCHECK, REMARK 3 HOMOLOGY SEARCH AGAINST PDB/EXPDB/PIR DATABASES, AOLEA, REMARK 3 GROMOS, VERIFY 3D AND VMD 1.84 PACKAGE. ALL PROGRAMS ARE WEB- REMARK 3 BASED. MODELS WERE BUILT IN EITHER LINUX/OR WINDOWS.

REMARK 4 REMARK 4 2IB4 COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY WAS DEPOSITED AT RCSB ON 09-SEP-2006. REMARK 100 THE RCSB ID CODE IS RCSB039363.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS THEORETICAL MODEL ENTRY WAS NOT ANNOTATED AND NOT REMARK 220 VALIDATED BY THE WWPDB STAFF AND THEREFORE MAY NOT REMARK 220 CONFORM TO THE PDB FORMAT.

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET 1 REMARK 465 SER 2 REMARK 465 ASN 3 REMARK 465 THR 4 REMARK 465 LEU 319

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS 318 O

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 0 RELATED DB: BMCD REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: BMRB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: EMDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: NDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: PDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: TARGETDB REMARK 900 0

SEQRES 1 319 MET SER ASN THR ILE VAL VAL VAL GLY ALA GLY VAL ILE SEQRES 2 319 GLY LEU THR SER ALA LEU LEU LEU SER LYS ASN LYS GLY SEQRES 3 319 ASN LYS ILE THR VAL VAL ALA LYS HIS MET PRO GLY ASP SEQRES 4 319 TYR ASP VAL GLU TYR ALA SER PRO PHE ALA GLY ALA ASN SEQRES 5 319 HIS SER PRO MET ALA THR GLU GLU SER SER GLU TRP GLU SEQRES 6 319 ARG ARG THR TRP TYR GLU PHE LYS ARG LEU VAL GLU GLU SEQRES 7 319 VAL PRO GLU ALA GLY VAL HIS PHE GLN LYS SER ARG ILE SEQRES 8 319 GLN ARG ARG ASN VAL ASP THR GLU LYS ALA GLN ARG SER SEQRES 9 319 GLY PHE PRO ASP ALA LEU PHE SER LYS GLU PRO TRP PHE SEQRES 10 319 LYS ASN MET PHE GLU ASP PHE ARG GLU GLN HIS PRO SER SEQRES 11 319 GLU VAL ILE PRO GLY TYR ASP SER GLY CYS GLU PHE THR SEQRES 12 319 SER VAL CYS ILE ASN THR ALA ILE TYR LEU PRO TRP LEU SEQRES 13 319 LEU GLY GLN CYS ILE LYS ASN GLY VAL ILE VAL LYS ARG SEQRES 14 319 ALA ILE LEU ASN ASP ILE SER GLU ALA LYS LYS LEU SER SEQRES 15 319 HIS ALA GLY LYS THR PRO ASN ILE ILE VAL ASN ALA THR SEQRES 16 319 GLY LEU GLY SER TYR LYS LEU GLY GLY VAL GLU ASP LYS SEQRES 17 319 THR MET ALA PRO ALA ARG GLY GLN ILE VAL VAL VAL ARG SEQRES 18 319 ASN GLU SER SER PRO MET LEU LEU THR SER GLY VAL GLU SEQRES 19 319 ASP GLY GLY ALA ASP VAL MET TYR LEU MET GLN ARG ALA SEQRES 20 319 ALA GLY GLY GLY THR ILE LEU GLY GLY THR TYR ASP VAL SEQRES 21 319 GLY ASN TRP GLU SER GLN PRO ASP PRO ASN ILE ALA ASN SEQRES 22 319 ARG ILE MET GLN ARG ILE VAL GLU VAL ARG PRO GLU ILE SEQRES 23 319 ALA ASN GLY LYS GLY VAL LYS GLY LEU SER VAL ILE ARG SEQRES 24 319 HIS ALA VAL GLY MET ARG PRO TRP ARG LYS ASP GLY VAL SEQRES 25 319 ARG ILE GLU GLU GLU LYS LEU

HELIX 1 1 GLY 11 LYS 23 1 13 HELIX 2 2 ALA 45 ALA 49 5 5 HELIX 3 3 SER 62 PHE 72 1 11 HELIX 4 4 LEU 75 VAL 79 5 5 HELIX 5 5 HIS 128 VAL 132 5 5 HELIX 6 6 ASN 148 ASN 163 1 16 HELIX 7 7 LYS 180 ALA 184 5 5 HELIX 8 8 THR 195 LYS 201 5 7 HELIX 9 9 GLU 234 ALA 238 5 5 HELIX 10 10 ASP 268 ARG 283 1 16 HELIX 11 11 PRO 284 ALA 287 5 4 HELIX 12 12 GLY 291 LEU 295 5 5

SHEET 1 A 4 ILE 166 VAL 167 0 SHEET 2 A 4 THR 30 VAL 32 1 N VAL 31 O ILE 166 SHEET 3 A 4 VAL 6 VAL 8 1 N VAL 7 O VAL 32 SHEET 4 A 4 ILE 191 ASN 193 1 O VAL 192 N VAL 8 SHEET 1 B 2 HIS 85 GLN 87 0 SHEET 2 B 2 SER 144 CYS 146 -1 O CYS 146 N HIS 85 SHEET 1 C 2 ASN 95 VAL 96 0 SHEET 2 C 2 THR 230 SER 231 1 O SER 231 N ASN 95 SHEET 1 D 2 GLU 99 LYS 100 0 SHEET 2 D 2 GLY 105 PHE 106 -1 O PHE 106 N GLU 99 SHEET 1 E 2 ARG 125 GLU 126 0 SHEET 2 E 2 CYS 140 GLU 141 -1 O GLU 141 N ARG 125 SHEET 1 F 4 LEU 243 ARG 246 0 SHEET 2 F 4 GLY 251 GLY 255 -1 O ILE 253 N MET 244 SHEET 3 F 4 MET 210 ARG 221 -1 N VAL 220 O THR 252 SHEET 4 F 4 ASP 259 VAL 260 -1 O ASP 259 N ARG 214 SHEET 1 G 4 LEU 243 ARG 246 0 SHEET 2 G 4 GLY 251 GLY 255 -1 O ILE 253 N MET 244 SHEET 3 G 4 MET 210 ARG 221 -1 N VAL 220 O THR 252 SHEET 4 G 4 SER 296 ARG 308 -1 O ILE 298 N VAL 219

CISPEP 1 GLY 50 ALA 51 0 -9.07 CISPEP 2 ARG 74 LEU 75 0 28.13 CISPEP 3 LYS 118 ASN 119 0 2.46 CISPEP 4 ASP 137 SER 138 0 -24.78 CISPEP 5 GLY 255 GLY 256 0 -0.61

CRYST1 1000.000 1000.000 1000.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.001000 0.000000 0.000000 0.00000

SCALE2 0.000000 0.001000 0.000000 0.00000

SCALE3 0.000000 0.000000 0.001000 0.00000