10 20 30 40 50 60 70 80 2IB1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER APOPTOSIS 08-SEP-06 2IB1
TITLE SOLUTION STRUCTURE OF P45 DEATH DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH DOMAIN CONTAINING MEMBRANE PROTEIN NRADD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 138-228; COMPND 5 SYNONYM: NEUROTROPHIN RECEPTOR ASSOCIATED DEATH DOMAIN; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: NRADD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX2T
KEYWDS P45, DEATH DOMAIN, APOPTOSIS, P75, NOGO, FADD
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.VILAR,T.C.SUNG,K.F.LEE,R.RIEK
REVDAT 2 24-FEB-09 2IB1 1 VERSN REVDAT 1 23-OCT-07 2IB1 0
JRNL AUTH M.VILAR,T.C.SUNG,K.F.LEE,R.RIEK JRNL TITL SOLUTION STRUCTURE OF P45 DEATH DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1319 RESTRAINTS, 1053 ARE NOE-DERIVED DISTANCE CONSTRAINTS, REMARK 3 266 DIHEDRAL ANGLE RESTRAINTS.
REMARK 4 REMARK 4 2IB1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-SEP-06. REMARK 100 THE RCSB ID CODE IS RCSB039360.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 137 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM PROTEIN, PBS REMARK 210 (PHOSPHATE BUFFER SALINE) REMARK 210 BUFFER, PH 7.5, 298 K REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA-J, 3D_15N-SEPARATED_ REMARK 210 NOESY, 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, XWINNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 148 -39.86 -159.84 REMARK 500 1 MET A 151 91.38 -55.03 REMARK 500 1 LYS A 156 -167.57 -108.32 REMARK 500 1 ASP A 178 78.37 -106.33 REMARK 500 1 MET A 180 127.42 73.16 REMARK 500 1 ALA A 191 3.87 81.90 REMARK 500 1 GLN A 192 -44.04 -156.97 REMARK 500 1 GLU A 193 -47.72 -168.94 REMARK 500 1 ASN A 195 -60.28 68.43 REMARK 500 1 LEU A 199 -60.28 66.26 REMARK 500 1 SER A 220 63.65 -173.19 REMARK 500 1 SER A 224 -168.02 178.98 REMARK 500 1 SER A 225 -140.04 59.18 REMARK 500 1 VAL A 227 168.66 72.04 REMARK 500 2 GLN A 139 -58.87 70.79 REMARK 500 2 MET A 150 55.01 -98.10 REMARK 500 2 MET A 151 -156.05 -144.75 REMARK 500 2 PRO A 154 145.64 -38.56 REMARK 500 2 LYS A 156 -164.02 -69.70 REMARK 500 2 CYS A 177 29.66 -141.93 REMARK 500 2 MET A 180 126.68 71.29 REMARK 500 2 ALA A 191 -24.18 85.08 REMARK 500 2 GLN A 192 30.93 -164.84 REMARK 500 2 ASN A 195 56.80 -68.12 REMARK 500 2 ARG A 211 55.54 -145.97 REMARK 500 2 SER A 220 64.03 -172.06 REMARK 500 2 SER A 226 64.19 -68.92 REMARK 500 2 VAL A 227 168.40 63.10 REMARK 500 3 LEU A 149 -33.45 -141.33 REMARK 500 3 MET A 151 53.83 -101.78 REMARK 500 3 LYS A 156 -175.31 -59.31 REMARK 500 3 TYR A 167 -163.08 -76.90 REMARK 500 3 MET A 180 132.56 69.69 REMARK 500 3 GLN A 192 -42.50 -165.01 REMARK 500 3 GLU A 193 -42.82 -179.38 REMARK 500 3 ASN A 195 -59.52 66.06 REMARK 500 3 ALA A 197 30.15 -95.13 REMARK 500 3 LEU A 199 -61.98 63.59 REMARK 500 3 SER A 219 42.72 -107.29 REMARK 500 3 SER A 220 108.37 -53.90 REMARK 500 3 GLU A 223 -73.04 -120.41 REMARK 500 3 SER A 226 -47.52 180.00 REMARK 500 3 VAL A 227 164.44 67.37 REMARK 500 4 GLN A 139 -55.58 66.00 REMARK 500 4 GLU A 153 50.17 -153.12 REMARK 500 4 LYS A 156 -169.91 -67.99 REMARK 500 4 TYR A 167 -166.34 -74.40 REMARK 500 4 MET A 180 133.28 74.23 REMARK 500 4 ALA A 191 -26.38 87.55 REMARK 500 4 GLN A 192 25.75 -153.49 REMARK 500 4 ASN A 195 60.95 -68.00 REMARK 500 4 ARG A 196 -54.04 -133.20 REMARK 500 4 ALA A 197 56.79 -96.63 REMARK 500 4 ARG A 211 58.81 -140.56 REMARK 500 4 ASP A 213 -38.09 -39.38 REMARK 500 4 SER A 224 -65.78 67.91 REMARK 500 4 SER A 225 -58.72 164.86 REMARK 500 4 VAL A 227 158.09 66.89 REMARK 500 5 MET A 150 32.19 -93.07 REMARK 500 5 MET A 180 121.25 77.10 REMARK 500 5 GLN A 192 -51.12 -174.33 REMARK 500 5 GLU A 193 72.35 178.29 REMARK 500 5 ASN A 195 -63.22 -137.45 REMARK 500 5 ALA A 197 31.16 -96.29 REMARK 500 5 THR A 198 -150.01 -141.57 REMARK 500 5 LEU A 199 -65.89 63.51 REMARK 500 5 SER A 220 102.46 -175.67 REMARK 500 5 GLU A 223 -55.95 -149.67 REMARK 500 5 SER A 224 -58.78 71.04 REMARK 500 5 SER A 225 -50.91 177.31 REMARK 500 5 SER A 226 -55.94 69.91 REMARK 500 5 VAL A 227 -43.74 72.77 REMARK 500 6 TYR A 167 -169.75 -78.94 REMARK 500 6 GLN A 179 47.42 37.48 REMARK 500 6 MET A 180 115.03 70.47 REMARK 500 6 ALA A 191 -2.54 81.75 REMARK 500 6 GLN A 192 -43.84 -146.72 REMARK 500 6 GLU A 193 -48.60 -168.90 REMARK 500 6 ALA A 197 38.47 -90.39 REMARK 500 6 ASP A 213 -37.78 -39.81 REMARK 500 6 VAL A 227 85.95 40.47 REMARK 500 7 GLN A 139 -46.37 73.31 REMARK 500 7 LEU A 148 -54.23 -120.15 REMARK 500 7 GLU A 153 75.20 23.26 REMARK 500 7 TYR A 167 -161.17 -74.17 REMARK 500 7 MET A 180 125.76 72.54 REMARK 500 7 ALA A 191 -24.59 88.42 REMARK 500 7 GLN A 192 -41.92 -136.73 REMARK 500 7 GLU A 193 -43.87 173.55 REMARK 500 7 SER A 219 34.40 -99.89 REMARK 500 7 ALA A 222 -87.69 177.24 REMARK 500 7 GLU A 223 -54.40 -143.26 REMARK 500 7 VAL A 227 169.02 65.61 REMARK 500 8 LEU A 149 -35.89 -165.29 REMARK 500 8 GLU A 153 64.91 -157.76 REMARK 500 8 MET A 180 130.31 70.38 REMARK 500 8 ALA A 191 -6.64 68.18 REMARK 500 8 GLN A 192 11.44 -151.79 REMARK 500 8 ASN A 195 52.29 -68.36 REMARK 500 8 ARG A 211 42.47 -100.77 REMARK 500 8 ALA A 222 43.81 -100.21 REMARK 500 8 VAL A 227 174.93 66.34 REMARK 500 9 GLN A 139 -47.81 67.08 REMARK 500 9 MET A 180 124.22 73.10 REMARK 500 9 ALA A 191 -21.42 87.36 REMARK 500 9 GLU A 193 -48.13 -176.51 REMARK 500 9 ASN A 195 -75.11 65.20 REMARK 500 9 THR A 198 -152.75 -139.82 REMARK 500 9 LEU A 199 -67.32 63.73 REMARK 500 9 ARG A 211 52.69 -111.05 REMARK 500 9 GLU A 223 -51.32 -144.35 REMARK 500 9 SER A 225 66.58 74.08 REMARK 500 9 SER A 226 95.87 -66.38 REMARK 500 9 VAL A 227 85.91 60.11 REMARK 500 10 GLU A 153 -60.42 175.44 REMARK 500 10 LYS A 156 -164.16 -59.16 REMARK 500 10 MET A 180 126.00 75.08 REMARK 500 10 ALA A 191 -9.67 77.25 REMARK 500 10 GLN A 192 -36.99 -149.13 REMARK 500 10 GLU A 193 -56.92 -169.66 REMARK 500 10 ALA A 197 32.31 -81.14 REMARK 500 10 SER A 219 42.77 -105.92 REMARK 500 10 PRO A 221 69.34 -64.64 REMARK 500 10 VAL A 227 177.19 65.80 REMARK 500 11 GLN A 139 -62.06 70.09 REMARK 500 11 ARG A 147 48.34 -78.00 REMARK 500 11 LEU A 148 -53.76 -171.55 REMARK 500 11 GLU A 153 80.89 63.33 REMARK 500 11 TYR A 167 -167.42 -78.34 REMARK 500 11 CYS A 177 21.73 -145.24 REMARK 500 11 ASP A 178 53.30 -91.58 REMARK 500 11 MET A 180 119.37 82.38 REMARK 500 11 GLN A 192 -44.77 -148.72 REMARK 500 11 GLU A 193 -56.91 -152.64 REMARK 500 11 ALA A 197 54.51 -119.60 REMARK 500 11 THR A 198 -153.48 -147.47 REMARK 500 11 LEU A 199 -65.56 67.77 REMARK 500 11 ARG A 211 67.32 -118.16 REMARK 500 11 GLU A 223 -165.42 66.70 REMARK 500 11 SER A 226 103.32 -56.91 REMARK 500 12 MET A 150 38.60 -89.66 REMARK 500 12 GLU A 153 57.56 -151.92 REMARK 500 12 TRP A 158 -39.34 166.05 REMARK 500 12 MET A 180 122.81 76.33 REMARK 500 12 ALA A 191 -30.13 96.22 REMARK 500 12 GLU A 193 -46.30 -171.76 REMARK 500 12 ALA A 197 48.58 -80.22 REMARK 500 12 PRO A 221 95.09 -63.55 REMARK 500 12 SER A 224 -151.76 58.96 REMARK 500 12 VAL A 227 178.91 62.32 REMARK 500 13 GLN A 139 -53.68 78.93 REMARK 500 13 PRO A 154 160.79 -48.55 REMARK 500 13 LYS A 156 -165.88 -58.71 REMARK 500 13 TYR A 167 -162.11 -76.67 REMARK 500 13 MET A 180 124.22 74.07 REMARK 500 13 ALA A 191 -15.78 83.44 REMARK 500 13 GLN A 192 -33.18 -145.13 REMARK 500 13 GLU A 193 45.05 87.36 REMARK 500 13 ASN A 195 36.66 -142.46 REMARK 500 13 THR A 198 -38.66 -144.55 REMARK 500 13 LEU A 199 70.87 -63.32 REMARK 500 13 ARG A 211 48.98 -105.43 REMARK 500 13 PRO A 221 37.05 -85.07 REMARK 500 14 GLN A 139 -18.33 73.32 REMARK 500 14 MET A 151 -136.11 -66.82 REMARK 500 14 LYS A 156 -173.65 -67.52 REMARK 500 14 GLN A 179 17.67 56.47 REMARK 500 14 MET A 180 112.15 163.97 REMARK 500 14 GLN A 192 -34.36 177.74 REMARK 500 14 GLU A 193 -52.06 -166.30 REMARK 500 14 ALA A 197 47.92 -79.25 REMARK 500 14 SER A 224 15.87 58.54 REMARK 500 14 SER A 225 -166.94 163.10 REMARK 500 14 VAL A 227 153.22 72.71 REMARK 500 15 MET A 150 53.19 -114.44 REMARK 500 15 MET A 151 -129.45 -75.21 REMARK 500 15 TYR A 167 -172.76 -67.85 REMARK 500 15 CYS A 177 37.67 -150.28 REMARK 500 15 ASP A 178 48.30 -108.14 REMARK 500 15 GLN A 179 45.30 71.21 REMARK 500 15 MET A 180 114.88 76.46 REMARK 500 15 ALA A 191 -28.35 96.18 REMARK 500 15 GLN A 192 -37.41 -146.26 REMARK 500 15 GLU A 193 -44.38 168.92 REMARK 500 15 ASN A 195 -47.46 175.71 REMARK 500 15 ARG A 196 -63.01 -104.97 REMARK 500 15 ALA A 197 53.02 -96.15 REMARK 500 15 LEU A 199 -61.27 65.79 REMARK 500 15 SER A 220 92.71 67.80 REMARK 500 15 ALA A 222 -158.95 62.12 REMARK 500 15 SER A 224 60.77 -66.15 REMARK 500 15 VAL A 227 172.01 64.60 REMARK 500 16 GLN A 139 -66.56 63.08 REMARK 500 16 LEU A 148 -47.53 170.69 REMARK 500 16 LYS A 156 132.71 63.59 REMARK 500 16 MET A 180 126.37 72.47 REMARK 500 16 ALA A 191 -22.14 84.21 REMARK 500 16 GLN A 192 33.82 -176.25 REMARK 500 16 ASN A 195 52.94 26.71 REMARK 500 16 ALA A 197 63.72 -118.12 REMARK 500 16 THR A 198 -166.33 179.33 REMARK 500 16 LEU A 199 -64.89 67.34 REMARK 500 16 ARG A 211 88.68 -151.32 REMARK 500 16 ALA A 222 83.35 -150.69 REMARK 500 16 SER A 226 -65.98 -179.79 REMARK 500 17 LYS A 156 -168.77 -70.29 REMARK 500 17 TYR A 167 -169.12 -72.76 REMARK 500 17 CYS A 177 36.46 -144.14 REMARK 500 17 MET A 180 126.26 71.44 REMARK 500 17 ALA A 191 -14.41 80.36 REMARK 500 17 GLN A 192 32.31 -172.61 REMARK 500 17 ASN A 195 58.10 -68.07 REMARK 500 17 ARG A 196 -47.04 -146.70 REMARK 500 17 ARG A 211 52.44 -145.00 REMARK 500 17 GLU A 223 -86.00 19.20 REMARK 500 17 SER A 225 66.41 -66.80 REMARK 500 17 VAL A 227 162.78 69.57 REMARK 500 18 LEU A 149 -41.80 -148.42 REMARK 500 18 MET A 151 63.28 -68.40 REMARK 500 18 PRO A 154 156.91 -44.91 REMARK 500 18 LYS A 156 175.36 -49.79 REMARK 500 18 CYS A 177 33.45 -142.79 REMARK 500 18 MET A 180 129.03 71.24 REMARK 500 18 ALA A 191 -23.37 96.75 REMARK 500 18 GLU A 193 -47.22 -166.68 REMARK 500 18 ARG A 196 -43.08 -131.14 REMARK 500 18 ALA A 197 47.53 -73.81 REMARK 500 18 SER A 219 32.82 -99.22 REMARK 500 18 ALA A 222 -60.93 70.65 REMARK 500 18 GLU A 223 44.08 36.14 REMARK 500 18 SER A 224 -76.22 -118.57 REMARK 500 19 LEU A 149 -46.86 -133.13 REMARK 500 19 MET A 180 128.39 71.14 REMARK 500 19 GLN A 192 -38.39 -173.49 REMARK 500 19 GLU A 193 -46.25 -154.77 REMARK 500 19 ALA A 197 22.32 -77.00 REMARK 500 19 LEU A 199 -56.81 64.49 REMARK 500 19 ARG A 211 55.71 -142.10 REMARK 500 19 PRO A 221 93.79 -59.98 REMARK 500 19 ALA A 222 -47.65 -179.65 REMARK 500 19 GLU A 223 -95.94 32.89 REMARK 500 19 SER A 224 -170.23 -175.95 REMARK 500 20 GLN A 139 52.79 -96.86 REMARK 500 20 LEU A 148 -67.33 -173.26 REMARK 500 20 LYS A 156 -169.18 -64.64 REMARK 500 20 MET A 180 124.91 69.91 REMARK 500 20 ALA A 191 -17.23 84.22 REMARK 500 20 GLN A 192 -39.87 -146.10 REMARK 500 20 GLU A 193 -56.60 -161.58 REMARK 500 20 ALA A 197 36.88 -75.87 REMARK 500 20 PRO A 221 66.38 -68.65 REMARK 500 20 SER A 224 45.51 -150.09 REMARK 500 20 SER A 225 -169.12 -104.04 REMARK 500 20 VAL A 227 173.07 67.94 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2IB1 A 138 228 UNP Q8CJ26 Q8CJ26_MOUSE 138 228
SEQRES 1 A 91 PRO GLN GLN GLN GLN GLU GLU VAL GLN ARG LEU LEU MET SEQRES 2 A 91 MET GLY GLU PRO ALA LYS GLY TRP GLN GLU LEU ALA GLY SEQRES 3 A 91 HIS LEU GLY TYR GLN ALA GLU ALA VAL GLU THR MET ALA SEQRES 4 A 91 CYS ASP GLN MET PRO ALA TYR THR LEU LEU ARG ASN TRP SEQRES 5 A 91 ALA ALA GLN GLU GLY ASN ARG ALA THR LEU ARG VAL LEU SEQRES 6 A 91 GLU ASP ALA LEU ALA ALA ILE GLY ARG GLU ASP VAL VAL SEQRES 7 A 91 GLN VAL LEU SER SER PRO ALA GLU SER SER SER VAL VAL
HELIX 1 1 GLN A 139 GLU A 144 1 6 HELIX 2 2 VAL A 145 MET A 150 1 6 HELIX 3 3 GLY A 157 GLY A 166 1 10 HELIX 4 4 GLN A 168 ALA A 176 1 9 HELIX 5 5 MET A 180 TRP A 189 1 10 HELIX 6 6 ARG A 200 ALA A 208 1 9 HELIX 7 7 ARG A 211 SER A 219 1 9
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000