2I43 - Header Asymmetric Unit

HEADER 21-AUG-06 2I43

TITLE THEORETICAL MODEL OF A COMPLEX OF GRIFFITHSIN WITH MAN9

COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRIFFITHSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE:; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GRIFFITHSIA SP.; SOURCE 3 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 4 MOL_ID: 2

KEYWDS GRIFFITHSIN, LECTINS, DOMAIN SWAPPING, MANNOSE BINDING, HIV, KEYWDS 2 SARS

EXPDTA THEORETICAL MODEL

AUTHOR N.E.ZIOLKOWSKA,A.WLODAWER

REVDAT 2 24-APR-07 2I43 1 JRNL REVDAT 1 17-OCT-06 2I43 0

JRNL AUTH N.E.ZIOLKOWSKA,S.R.SHENOY,B.R.O'KEEFE,J.B.MCMAHON, JRNL AUTH 2 K.E.PALMER,R.A.DWEK,M.R.WORMALD,A.WLODAWER JRNL TITL CRYSTALLOGRAPHIC, THERMODYNAMIC, AND MOLECULAR JRNL TITL 2 MODELING STUDIES OF THE MODE OF BINDING OF JRNL TITL 3 OLIGOSACCHARIDES TO THE POTENT ANTIVIRAL PROTEIN JRNL TITL 4 GRIFFITHSIN. JRNL REF PROTEINS V. 67 661 2007 JRNL REFN ASTM PSFGEY US ISSN 0887-3585

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2I43 COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS FILE IS A TEST VERSION. REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-04-20)

REMARK 100 REMARK 100 THIS ENTRY WAS DEPOSITED AT RCSB ON 21-AUG-2006. REMARK 100 THE RCSB ID CODE IS RCSB039111.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS THEORETICAL MODEL ENTRY WAS NOT ANNOTATED AND NOT REMARK 220 VALIDATED BY THE WWPDB STAFF AND THEREFORE MAY NOT REMARK 220 CONFORM TO THE PDB FORMAT.

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RELATED DB: 2GTY REMARK 900 RELATED ID: RELATED DB: 2GUC REMARK 900 RELATED ID: RELATED DB: 2GUD REMARK 900 RELATED ID: RELATED DB: 2GUE REMARK 900 RELATED ID: RELATED DB: 2GUX REMARK 900 RELATED ID: RELATED DB: 2HYQ

SEQRES 1 A 19 ACE SER LEU THR HIS ARG LYS PHE GLY GLY SER GLY GLY SEQRES 2 A 19 SER PRO PHE SER GLY LEU SEQRES 1 B 103 SER SER ILE ALA VAL ARG SER GLY SER TYR LEU ASP ALA SEQRES 2 B 103 ILE ILE ILE ASP GLY VAL HIS HIS GLY GLY SER GLY GLY SEQRES 3 B 103 ASN LEU SER PRO THR PHE THR PHE GLY SER GLY GLU TYR SEQRES 4 B 103 ILE SER ASN MET THR ILE ARG SER GLY ASP TYR ILE ASP SEQRES 5 B 103 ASN ILE SER PHE GLU THR ASN MET GLY ARG ARG PHE GLY SEQRES 6 B 103 PRO TYR GLY GLY SER GLY GLY SER ALA ASN THR LEU SER SEQRES 7 B 103 ASN VAL LYS VAL ILE GLN ILE ASN GLY SER ALA GLY ASP SEQRES 8 B 103 TYR LEU ASP SER LEU ASP ILE TYR TYR GLU GLN TYR

HET ACE A 0 3 HET NAG M 1 15 HET NAG M 2 14 HET MAN M 3 11 HET MAN M 4 11 HET MAN M 5 10 HET MAN M 6 12 HET MAN M 7 10 HET MAN M 8 12 HET MAN M 9 11 HET MAN M 10 10 HET MAN M 11 12

HETNAM ACE ACETYL GROUP HETNAM NAG N-ACETYL-D-GLUCOSAMINE HETNAM MAN ALPHA-D-MANNOSE

HETSYN NAG NAG

FORMUL 1 ACE C2 H4 O FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 3 MAN 9(C6 H12 O6)

SHEET 1 A 4 SER A 1 GLY A 8 0 SHEET 2 A 4 LEU B 111 GLN B 120 -1 O TYR B 118 N THR A 3 SHEET 3 A 4 VAL B 98 ALA B 107 -1 N ILE B 101 O TYR B 117 SHEET 4 A 4 SER A 13 PHE A 15 -1 N SER A 13 O ALA B 107 SHEET 1 B 4 VAL B 37 GLY B 40 0 SHEET 2 B 4 LEU B 29 ILE B 34 -1 N ILE B 32 O HIS B 39 SHEET 3 B 4 SER B 20 SER B 25 -1 N ALA B 22 O ILE B 33 SHEET 4 B 4 ASN B 45 LEU B 46 -1 O ASN B 45 N SER B 25 SHEET 1 C 4 VAL B 37 GLY B 40 0 SHEET 2 C 4 LEU B 29 ILE B 34 -1 N ILE B 32 O HIS B 39 SHEET 3 C 4 SER B 20 SER B 25 -1 N ALA B 22 O ILE B 33 SHEET 4 C 4 PHE B 50 THR B 51 -1 O PHE B 50 N ILE B 21 SHEET 1 D 4 ARG B 81 GLY B 86 0 SHEET 2 D 4 ILE B 69 THR B 76 -1 N PHE B 74 O PHE B 82 SHEET 3 D 4 ILE B 58 SER B 65 -1 N THR B 62 O SER B 73 SHEET 4 D 4 SER B 91 SER B 96 -1 O ASN B 93 N ILE B 63

LINK O4 NAG M 1 C1 NAG M 2 LINK O4 NAG M 2 C1 MAN M 3 LINK O3 MAN M 3 C1 MAN M 9 LINK O6 MAN M 3 C1 MAN M 4 LINK O3 MAN M 4 C1 MAN M 7 LINK O6 MAN M 4 C1 MAN M 5 LINK O2 MAN M 9 C1 MAN M 10 LINK C2 MAN M 5 O1 MAN M 6 LINK C2 MAN M 7 O1 MAN M 8 LINK C2 MAN M 10 O1 MAN M 11

CISPEP 1 GLY B 83 PRO B 84 0 5.79

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000