2I3K - Header Asymmetric Unit

HEADER DUMMY FOR WHATIF 19-AUG-06 2I3K

TITLE RABBIT D-AMINO ACID OXIDASE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORYCTOLAGUS CUNICULUS (RABBIT) D-AMINO-ACID COMPND 3 OXIDASE (DAMOX) (DAO) (DAAO).; COMPND 4 CHAIN: NULL; COMPND 5 FRAGMENT: RABBIT D-AMINO ACID OXIDASE; COMPND 6 EC: EC No.1.4.3.3.; COMPND 7 MUTATION: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 STRAIN: LOCUS P22942 347 AA SOURCE 5 LINEAR MAM 27-JUN-2006 DEFINITION D-AMINO-ACID SOURCE 6 OXIDASE (DAMOX) (DAO) (DAAO). ACCESSION P22942 VERSION SOURCE 7 P22942 GI:129306 DBSOURCE SWISSPROT: LOCUS SOURCE 8 OXDA_RABIT, ACCESSION P22942; CLASS: SOURCE 9 STANDARD. CREATED: AUG 1, 1991. SOURCE 10 SEQUENCE UPDATED: AUG 1, 1991. ANNOTATION SOURCE 11 UPDATED: JUN 27, 2006. XREFS: D12494.1, SOURCE 12 BAA02058.1, JX0132 XREFS (NON-SEQUENCE SOURCE 13 DATABASES): HSSP:P00371, SMR:P22942, SOURCE 14 INTERPRO:IPR006181, INTERPRO:IPR006076, PFAM:PF01266, SOURCE 15 PROSITE:PS00677; SOURCE 16 OTHER_DETAILS: [FUNCTION] COULD ACT AS A DETOXIFYING AGENT SOURCE 17 WHICH REMOVES D-AMINO ACIDS ACCUMULATED SOURCE 18 DURING AGING. ACTS ON A VARIETY OF D-AMINO ACIDS SOURCE 19 WITH A PREFERENCE FOR THOSE HAVING SMALL HYDROPHOBIC SOURCE 20 SIDE CHAINS FOLLOWED BY THOSE BEARING POLAR, SOURCE 21 AROMATIC, AND BASIC GROUPS. DOES NOT ACT ON SOURCE 22 ACIDIC AMINO ACIDS. [CATALYTIC ACTIVITY] A D- SOURCE 23 AMINO ACID + H(2)O + O(2) = A 2-OXO ACID + SOURCE 24 NH(3) + H(2)O(2). [COFACTOR] FAD. SOURCE 25 [SUBUNIT] HOMODIMER (BY SIMILARITY). SOURCE 26 [SUBCELLULAR LOCATION] PEROXISOME. SOURCE 27 [SIMILARITY] BELONGS TO THE DAMOX/DASOX FAMILY.

KEYWDS D-AMINO ACID OXIDASE( FAD; FLAVOPROTEIN; OXIDOREDUCTASE; KEYWDS 2 EROXISOME).

EXPDTA THEORETICAL MODEL

AUTHOR P.BHATTACHARYA,A.LYNN,S.SUBHARAO,0,0,0

REVDAT 1 12-SEP-06 2I3K 0

JRNL AUTH PRADIP BHATTACHARYA JRNL TITL COMPARATIVE PROTEIN MODELLING JRNL REF THESIS V. 0 0 2006

REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH ANDREW LYNN REMARK 1 REFERENCE 2 REMARK 1 AUTH S SUBHARAO

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PROCHECK, WHAT-IF,VERIFY 3D, GROMOS, REMARK 3 ANNOLEA PROGRAMS

REMARK 4 REMARK 4 2I3K COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998

REMARK 100 REMARK 100 THIS ENTRY WAS DEPOSITED AT RCSB ON 19-AUG-2006. REMARK 100 THE RCSB ID CODE IS RCSB039092.

REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THEORETICAL MODELS BASED ON PDB ID 1AN9(PIG D-AMINO REMARK 220 ACID OXIDASE). THIS THEORETICAL MODEL ENTRY WAS NOT REMARK 220 ANNOTATED AND NOT VALIDATED BY THE WWPDB STAFF AND REMARK 220 THEREFORE MAY NOT CONFORM TO THE PDB FORMAT.

REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS.

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS 337 O

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 0 RELATED DB: BMCD REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: BMRB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: EMDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: NDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: PDB REMARK 900 0 REMARK 900 RELATED ID: 0 RELATED DB: TARGETDB REMARK 900 0

SEQRES 1 337 MET ARG VAL VAL VAL ILE GLY ALA GLY VAL ILE GLY LEU SEQRES 2 337 SER THR ALA LEU CYS ILE HIS GLU LEU TYR HIS SER ALA SEQRES 3 337 LEU GLN PRO LEU ASP MET THR ILE TYR ALA ASP ARG PHE SEQRES 4 337 THR PRO LEU THR ASN THR ASP VAL ALA ALA GLY LEU TRP SEQRES 5 337 GLN PRO TYR LEU SER ASP PRO SER ASN PRO GLN GLU ALA SEQRES 6 337 ASP TRP SER ARG GLN THR PHE ASN HIS LEU LEU SER HIS SEQRES 7 337 ILE HIS SER PRO SER ALA GLU LYS MET GLY LEU ALA LEU SEQRES 8 337 ILE SER GLY TYR ASN LEU PHE ARG LYS ALA VAL PRO ASP SEQRES 9 337 PRO SER TRP LYS ASP THR VAL LEU GLY PHE ARG LYS LEU SEQRES 10 337 THR LEU ARG GLU LEU ASP MET PHE PRO GLY TYR SER TYR SEQRES 11 337 GLY TRP PHE ASN THR SER LEU ILE LEU ASP GLY ARG SER SEQRES 12 337 TYR LEU GLN TRP LEU THR LYS ARG LEU THR GLU ARG GLY SEQRES 13 337 VAL LYS LEU PHE GLN ARG LYS VAL GLU SER PHE ASP GLU SEQRES 14 337 VAL ALA GLY GLY GLY VAL ASP VAL ILE VAL ASN CYS THR SEQRES 15 337 GLY VAL TRP ALA SER ALA LEU GLN PRO ASP PRO LEU LEU SEQRES 16 337 GLN PRO GLY ARG GLY GLN ILE ILE LYS VAL ASP ALA PRO SEQRES 17 337 TRP VAL LYS HIS PHE ILE ILE THR HIS ASP PRO GLU SER SEQRES 18 337 GLY ILE TYR LYS SER PRO TYR ILE ILE PRO GLY VAL HIS SEQRES 19 337 ALA VAL THR LEU GLY GLY ILE PHE GLN MET GLY ASN TRP SEQRES 20 337 SER GLU GLY ASN SER THR ASP ASP HIS ASN THR ILE TRP SEQRES 21 337 LYS GLY CYS CYS SER LEU GLU PRO THR LEU LYS ASP ALA SEQRES 22 337 ARG ILE VAL GLY GLU TRP THR GLY PHE ARG PRO VAL ARG SEQRES 23 337 PRO GLN ILE ARG LEU GLY ARG GLU GLN LEU SER ALA GLY SEQRES 24 337 PRO SER LYS THR GLU VAL ILE HIS ASN TYR GLY HIS GLY SEQRES 25 337 GLY TYR GLY LEU THR ILE HIS TRP GLY CYS ALA LEU GLU SEQRES 26 337 ALA ALA LYS LEU PHE GLY LYS ILE LEU GLU GLU LYS

HELIX 1 1 GLY 9 HIS 24 1 16 HELIX 2 2 PHE 39 LEU 42 5 4 HELIX 3 3 THR 43 ALA 48 1 6 HELIX 4 4 PRO 62 SER 77 1 16 HELIX 5 5 ALA 84 MET 87 5 4 HELIX 6 6 THR 118 ASP 123 1 6 HELIX 7 7 ASP 140 ARG 155 1 16 HELIX 8 8 SER 166 GLY 173 1 8 HELIX 9 9 THR 182 VAL 184 5 3 HELIX 10 10 TRP 185 GLN 190 1 6 HELIX 11 11 ASP 218 GLY 222 5 5 HELIX 12 12 SER 252 GLU 267 1 16 HELIX 13 13 PRO 268 ALA 273 5 6 HELIX 14 14 TYR 314 LYS 337 1 24

SHEET 1 A 6 LYS 158 GLN 161 0 SHEET 2 A 6 ASP 31 ALA 36 1 N ILE 34 O PHE 160 SHEET 3 A 6 ARG 2 ILE 6 1 N VAL 3 O ASP 31 SHEET 4 A 6 VAL 177 ASN 180 1 O VAL 179 N ILE 6 SHEET 5 A 6 THR 303 TYR 309 1 O ILE 306 N ASN 180 SHEET 6 A 6 ARG 290 LEU 296 -1 N GLU 294 O VAL 305 SHEET 1 B 8 LEU 112 LYS 116 0 SHEET 2 B 8 TYR 130 LEU 139 -1 O THR 135 N LEU 112 SHEET 3 B 8 LEU 89 PHE 98 -1 N PHE 98 O TYR 130 SHEET 4 B 8 PHE 213 HIS 217 1 O ILE 215 N TYR 95 SHEET 5 B 8 TYR 228 PRO 231 -1 O ILE 229 N ILE 214 SHEET 6 B 8 VAL 236 GLY 239 -1 O THR 237 N ILE 230 SHEET 7 B 8 GLN 196 ASP 206 -1 N ILE 203 O LEU 238 SHEET 8 B 8 GLN 243 MET 244 -1 O GLN 243 N ARG 199 SHEET 1 C 8 LEU 112 LYS 116 0 SHEET 2 C 8 TYR 130 LEU 139 -1 O THR 135 N LEU 112 SHEET 3 C 8 LEU 89 PHE 98 -1 N PHE 98 O TYR 130 SHEET 4 C 8 PHE 213 HIS 217 1 O ILE 215 N TYR 95 SHEET 5 C 8 TYR 228 PRO 231 -1 O ILE 229 N ILE 214 SHEET 6 C 8 VAL 236 GLY 239 -1 O THR 237 N ILE 230 SHEET 7 C 8 GLN 196 ASP 206 -1 N ILE 203 O LEU 238 SHEET 8 C 8 ARG 274 VAL 285 -1 O VAL 276 N LYS 204

CRYST1 1000.000 1000.000 1000.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 0.001000 0.000000 0.000000 0.00000

SCALE2 0.000000 0.001000 0.000000 0.00000

SCALE3 0.000000 0.000000 0.001000 0.00000