10 20 30 40 50 60 70 80 2I3E - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 18-AUG-06 2I3E
TITLE SOLUTION STRUCTURE OF CATALYTIC DOMAIN OF GOLDFISH RICH TITLE 2 PROTEIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: G-RICH; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.4.37; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARASSIUS AURATUS; SOURCE 3 ORGANISM_COMMON: GOLDFISH; SOURCE 4 ORGANISM_TAXID: 7957; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B
KEYWDS RICH PROTEIN, CNP, 2',3'-CYCLIC-NUCLEOTIDE 3'- KEYWDS 2 PHOSPHODIESTERASE, NERVE REGENERATION, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR A.Y.DENISOV,G.KOZLOV,K.GEHRING
REVDAT 3 24-FEB-09 2I3E 1 VERSN REVDAT 2 17-APR-07 2I3E 1 JRNL REVDAT 1 06-MAR-07 2I3E 0
JRNL AUTH G.KOZLOV,A.Y.DENISOV,E.POMERANTSEVA,M.GRAVEL, JRNL AUTH 2 P.E.BRAUN,K.GEHRING JRNL TITL SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF RICH JRNL TITL 2 PROTEIN FROM GOLDFISH. JRNL REF FEBS J. V. 274 1600 2007 JRNL REFN ISSN 1742-464X JRNL PMID 17480208 JRNL DOI 10.1111/J.1742-4658.2007.05707.X
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE WAS REFINED BY USING REMARK 3 STANDARD PROTOCOL IN CNS WITH RESTRAINTS FROM NOE DISTANCES, REMARK 3 BACKBONE TORSION ANGLES AND HYDROGEN BONDS
REMARK 4 REMARK 4 2I3E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-06. REMARK 100 THE RCSB ID CODE IS RCSB039086.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 307 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM RICH PROTEIN U-15N,13C; REMARK 210 50 MM MES BUFFER, 90% H2O, 10% REMARK 210 D2O; 1 MM RICH PROTEIN U-15N, REMARK 210 13C AND 90%-2D; 50 MM MES REMARK 210 BUFFER, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-EDITED NOESY, 13C-EDITED REMARK 210 NOESY, HNCA, HNCACB, CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY, DRX REMARK 210 SPECTROMETER MANUFACTURER : VARIAN, BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE 2.0, REMARK 210 XEASY 1.3.13, ARIA 1.1, TALOS REMARK 210 2003 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY AND THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING MULTI-RESONANCE NMR REMARK 210 SPECTROSCOPY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -57.91 -132.88 REMARK 500 1 MET A 4 80.55 -67.26 REMARK 500 1 ALA A 50 75.37 -171.13 REMARK 500 1 GLU A 51 -85.59 -148.68 REMARK 500 1 LYS A 52 -63.74 171.94 REMARK 500 1 GLU A 53 55.12 -150.48 REMARK 500 1 LEU A 64 -80.49 -64.61 REMARK 500 1 GLN A 65 81.38 -64.91 REMARK 500 1 THR A 70 -75.77 -131.62 REMARK 500 1 ASP A 74 -79.93 62.97 REMARK 500 1 TYR A 75 -82.53 -178.34 REMARK 500 1 ALA A 78 79.95 -102.92 REMARK 500 1 LEU A 118 -171.80 -60.47 REMARK 500 1 PRO A 147 168.75 -45.32 REMARK 500 1 LYS A 182 -81.32 -68.27 REMARK 500 1 ARG A 201 107.33 55.25 REMARK 500 1 LEU A 206 87.58 -68.10 REMARK 500 2 LEU A 8 -48.98 -131.43 REMARK 500 2 GLU A 49 69.47 62.56 REMARK 500 2 ALA A 50 40.37 -166.76 REMARK 500 2 GLU A 51 54.94 -148.83 REMARK 500 2 GLU A 53 73.08 -175.57 REMARK 500 2 VAL A 54 50.92 -147.85 REMARK 500 2 PHE A 60 -174.94 46.38 REMARK 500 2 LEU A 64 -59.42 -179.64 REMARK 500 2 THR A 70 -141.45 -118.27 REMARK 500 2 ASP A 74 -78.54 64.03 REMARK 500 2 TYR A 75 -74.29 -178.84 REMARK 500 2 GLU A 79 -64.03 -105.74 REMARK 500 2 LYS A 96 172.40 -59.04 REMARK 500 2 PRO A 109 62.99 -66.16 REMARK 500 2 ARG A 110 -53.31 179.49 REMARK 500 2 LEU A 118 -177.34 -61.02 REMARK 500 2 LEU A 156 -65.16 -129.40 REMARK 500 2 LYS A 182 40.93 -93.89 REMARK 500 2 GLU A 183 54.94 -118.92 REMARK 500 2 ARG A 201 105.40 53.88 REMARK 500 2 PRO A 209 158.78 -48.06 REMARK 500 2 SER A 220 -74.30 -113.53 REMARK 500 2 GLU A 221 123.32 63.33 REMARK 500 3 SER A 2 137.53 63.70 REMARK 500 3 HIS A 3 -56.11 -154.64 REMARK 500 3 MET A 4 119.67 -161.84 REMARK 500 3 GLU A 5 31.40 -163.63 REMARK 500 3 PHE A 9 136.33 177.43 REMARK 500 3 GLU A 49 39.71 176.55 REMARK 500 3 ALA A 50 76.90 70.07 REMARK 500 3 LYS A 52 -49.18 -169.89 REMARK 500 3 VAL A 54 27.83 46.00 REMARK 500 3 ASP A 55 86.90 179.89 REMARK 500 3 PHE A 60 150.34 -46.12 REMARK 500 3 LEU A 64 -79.97 -72.55 REMARK 500 3 THR A 70 -86.33 -96.38 REMARK 500 3 ASP A 74 -78.24 64.56 REMARK 500 3 TYR A 75 -77.51 179.84 REMARK 500 3 LEU A 156 -48.04 -131.78 REMARK 500 3 LYS A 182 39.49 -91.28 REMARK 500 3 GLU A 183 53.11 -114.48 REMARK 500 3 PRO A 209 151.97 -47.41 REMARK 500 3 SER A 220 -76.20 -79.31 REMARK 500 3 GLU A 221 116.10 -173.62 REMARK 500 4 MET A 4 44.38 -176.45 REMARK 500 4 GLU A 5 68.96 61.86 REMARK 500 4 GLU A 51 -80.49 -176.11 REMARK 500 4 LYS A 52 -60.67 168.80 REMARK 500 4 GLU A 53 33.74 -141.86 REMARK 500 4 PHE A 60 106.67 -52.26 REMARK 500 4 THR A 70 -87.47 -123.23 REMARK 500 4 TYR A 75 -72.54 63.64 REMARK 500 4 GLU A 86 31.61 -97.27 REMARK 500 4 LEU A 118 -166.98 -71.04 REMARK 500 4 GLU A 183 45.02 -98.92 REMARK 500 5 MET A 4 47.67 -93.16 REMARK 500 5 ALA A 50 62.81 62.13 REMARK 500 5 GLU A 51 71.77 -163.40 REMARK 500 5 LYS A 52 -81.63 -141.62 REMARK 500 5 GLU A 53 -35.16 174.86 REMARK 500 5 PHE A 60 162.19 66.06 REMARK 500 5 GLN A 65 87.08 59.60 REMARK 500 5 THR A 70 -79.91 -84.15 REMARK 500 5 ASP A 74 -79.09 64.52 REMARK 500 5 TYR A 75 -80.60 -173.21 REMARK 500 5 GLU A 79 -65.79 -109.99 REMARK 500 5 GLU A 86 32.87 -96.91 REMARK 500 5 LEU A 118 -168.67 -63.51 REMARK 500 5 ALA A 160 78.51 -65.93 REMARK 500 5 LYS A 182 39.13 -89.25 REMARK 500 5 LEU A 206 86.44 -68.30 REMARK 500 5 GLU A 221 -78.87 64.36 REMARK 500 6 SER A 2 31.36 -98.77 REMARK 500 6 GLU A 5 37.94 -97.31 REMARK 500 6 ALA A 50 71.32 -162.20 REMARK 500 6 LYS A 52 -71.91 -172.84 REMARK 500 6 GLU A 53 36.52 -176.00 REMARK 500 6 PHE A 60 -177.52 158.11 REMARK 500 6 THR A 70 -88.33 -129.69 REMARK 500 6 ASP A 74 -67.46 69.41 REMARK 500 6 TYR A 75 -76.00 -169.86 REMARK 500 6 GLU A 86 31.09 -95.27 REMARK 500 6 PRO A 109 62.14 -66.78 REMARK 500 6 ARG A 110 -42.47 173.84 REMARK 500 6 LEU A 118 -178.33 -55.84 REMARK 500 6 LEU A 156 -52.87 -128.45 REMARK 500 6 LYS A 182 44.23 -96.36 REMARK 500 6 ARG A 201 116.00 61.11 REMARK 500 6 PRO A 209 156.71 -43.68 REMARK 500 6 SER A 220 -57.34 -163.98 REMARK 500 7 SER A 2 59.58 -109.25 REMARK 500 7 MET A 4 109.34 60.50 REMARK 500 7 GLU A 5 48.92 -166.29 REMARK 500 7 LEU A 8 -74.42 -100.62 REMARK 500 7 GLU A 49 67.77 60.56 REMARK 500 7 ALA A 50 49.40 -172.51 REMARK 500 7 GLU A 51 -76.12 -162.90 REMARK 500 7 LYS A 52 -56.32 172.51 REMARK 500 7 GLU A 53 -30.89 172.52 REMARK 500 7 PHE A 60 116.81 61.98 REMARK 500 7 PRO A 63 -73.00 -62.53 REMARK 500 7 LEU A 64 -65.97 -178.34 REMARK 500 7 THR A 70 -82.57 -138.15 REMARK 500 7 ASP A 74 -79.91 63.43 REMARK 500 7 TYR A 75 -74.15 -164.03 REMARK 500 7 PRO A 109 62.78 -65.85 REMARK 500 7 ARG A 110 -42.71 178.54 REMARK 500 7 LEU A 156 -70.57 -133.18 REMARK 500 7 LYS A 182 40.99 -93.19 REMARK 500 7 ARG A 201 117.55 60.53 REMARK 500 7 LEU A 206 84.88 -64.68 REMARK 500 7 SER A 220 -74.07 -134.54 REMARK 500 8 GLU A 5 74.81 -169.37 REMARK 500 8 GLU A 49 38.35 178.90 REMARK 500 8 ALA A 50 74.89 67.18 REMARK 500 8 LYS A 52 -87.82 -134.61 REMARK 500 8 GLU A 53 19.22 -147.44 REMARK 500 8 LEU A 64 -43.47 85.09 REMARK 500 8 THR A 70 -73.68 -140.32 REMARK 500 8 ASP A 74 -67.84 68.68 REMARK 500 8 TYR A 75 -75.93 -178.58 REMARK 500 8 GLU A 86 30.72 -95.72 REMARK 500 8 PRO A 147 152.64 -45.21 REMARK 500 8 LYS A 182 40.85 -94.46 REMARK 500 8 ARG A 201 103.15 55.02 REMARK 500 8 PRO A 209 152.92 -49.28 REMARK 500 8 SER A 220 -75.15 -106.21 REMARK 500 9 MET A 4 33.41 -155.52 REMARK 500 9 GLU A 5 78.38 -177.10 REMARK 500 9 ALA A 50 70.94 64.12 REMARK 500 9 LYS A 52 -76.82 -136.33 REMARK 500 9 GLU A 53 27.40 -158.45 REMARK 500 9 ASP A 55 46.57 -101.88 REMARK 500 9 PRO A 63 -167.98 -72.74 REMARK 500 9 LEU A 64 -79.81 -112.26 REMARK 500 9 GLN A 65 85.17 -61.93 REMARK 500 9 THR A 70 -143.97 -127.56 REMARK 500 9 ASP A 74 -75.15 65.42 REMARK 500 9 TYR A 75 -76.18 -179.22 REMARK 500 9 GLU A 79 -66.78 -109.82 REMARK 500 9 GLU A 86 32.34 -97.45 REMARK 500 9 LEU A 118 -169.55 -71.30 REMARK 500 9 LEU A 156 -59.93 -123.25 REMARK 500 9 ALA A 160 52.22 -90.15 REMARK 500 9 LYS A 182 39.07 -91.62 REMARK 500 9 GLU A 183 54.54 -115.18 REMARK 500 9 PRO A 209 157.02 -48.21 REMARK 500 9 SER A 220 87.79 -150.00 REMARK 500 10 SER A 2 123.16 63.04 REMARK 500 10 MET A 4 33.32 -98.40 REMARK 500 10 GLU A 5 73.88 -176.59 REMARK 500 10 LEU A 8 -47.08 -141.64 REMARK 500 10 ALA A 50 53.94 -173.93 REMARK 500 10 GLU A 51 -69.55 -130.78 REMARK 500 10 LYS A 52 -59.41 176.88 REMARK 500 10 GLU A 53 38.60 176.71 REMARK 500 10 THR A 70 -72.70 -119.25 REMARK 500 10 TYR A 75 -69.61 67.64 REMARK 500 10 LEU A 118 -176.81 -59.47 REMARK 500 10 LYS A 132 -33.69 -38.15 REMARK 500 10 LEU A 156 -69.66 -135.05 REMARK 500 10 LYS A 182 41.35 -93.82 REMARK 500 10 PRO A 209 161.10 -46.78 REMARK 500 10 GLU A 221 141.61 -173.05 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WOJ RELATED DB: PDB REMARK 900 CNPASE
DBREF 2I3E A 5 222 UNP Q90306 Q90306_CARAU 172 389
SEQADV 2I3E GLY A 1 UNP Q90306 CLONING ARTIFACT SEQADV 2I3E SER A 2 UNP Q90306 CLONING ARTIFACT SEQADV 2I3E HIS A 3 UNP Q90306 CLONING ARTIFACT SEQADV 2I3E MET A 4 UNP Q90306 CLONING ARTIFACT
SEQRES 1 A 222 GLY SER HIS MET GLU LEU PRO LEU PHE PHE GLY TRP PHE SEQRES 2 A 222 LEU LEU PRO GLU GLU GLU GLU ARG ILE LYS CYS ALA THR SEQRES 3 A 222 MET ASP PHE LEU LYS THR LEU ASP THR LEU GLU ALA PHE SEQRES 4 A 222 LYS GLU HIS ILE SER GLU PHE THR GLY GLU ALA GLU LYS SEQRES 5 A 222 GLU VAL ASP LEU GLU GLN TYR PHE GLN ASN PRO LEU GLN SEQRES 6 A 222 LEU HIS CYS THR THR LYS PHE CYS ASP TYR GLY LYS ALA SEQRES 7 A 222 GLU GLY ALA LYS GLU TYR ALA GLU LEU GLN VAL VAL LYS SEQRES 8 A 222 GLU SER LEU THR LYS SER TYR GLU LEU SER VAL THR ALA SEQRES 9 A 222 LEU ILE VAL THR PRO ARG THR PHE GLY ALA ARG VAL ALA SEQRES 10 A 222 LEU THR GLU ALA GLN VAL LYS LEU TRP PRO GLU GLY ALA SEQRES 11 A 222 ASP LYS GLU GLY VAL ALA PRO ALA LEU LEU PRO SER VAL SEQRES 12 A 222 GLU ALA LEU PRO ALA GLY SER ARG ALA HIS VAL THR LEU SEQRES 13 A 222 GLY CYS SER ALA GLY VAL GLU THR VAL GLN THR GLY LEU SEQRES 14 A 222 ASP LEU LEU GLU ILE LEU ALA LEU GLN LYS GLU GLY LYS SEQRES 15 A 222 GLU GLY THR GLN VAL GLU MET ASP LEU GLY THR LEU THR SEQRES 16 A 222 TYR LEU SER GLU GLY ARG TRP PHE LEU ALA LEU ARG GLU SEQRES 17 A 222 PRO ILE ASN ALA ASP THR THR PHE THR SER PHE SER GLU SEQRES 18 A 222 ASP
HELIX 1 1 LEU A 15 LEU A 36 1 22 HELIX 2 2 LEU A 36 HIS A 42 1 7 HELIX 3 3 HIS A 42 GLY A 48 1 7 HELIX 4 4 ASP A 55 PHE A 60 1 6 HELIX 5 5 ALA A 78 GLU A 86 1 9 HELIX 6 6 LEU A 87 SER A 93 1 7 HELIX 7 7 THR A 119 LEU A 125 1 7 HELIX 8 8 GLU A 128 GLU A 133 5 6 HELIX 9 9 ALA A 136 ALA A 138 5 3 HELIX 10 10 LEU A 139 GLU A 144 1 6 HELIX 11 11 THR A 164 GLU A 180 1 17
SHEET 1 A 9 THR A 185 GLU A 188 0 SHEET 2 A 9 GLY A 192 TYR A 196 -1 O LEU A 194 N VAL A 187 SHEET 3 A 9 TRP A 202 PHE A 219 -1 O ALA A 205 N THR A 193 SHEET 4 A 9 SER A 97 VAL A 107 -1 N LEU A 100 O ALA A 212 SHEET 5 A 9 THR A 111 ALA A 117 -1 O ALA A 117 N SER A 101 SHEET 6 A 9 ALA A 152 CYS A 158 -1 O ALA A 152 N VAL A 116 SHEET 7 A 9 HIS A 67 PHE A 72 -1 N HIS A 67 O THR A 155 SHEET 8 A 9 PHE A 9 LEU A 14 -1 N PHE A 10 O THR A 70 SHEET 9 A 9 TRP A 202 PHE A 219 -1 O THR A 217 N GLY A 11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000